data_5D9J
#
_model_server_result.job_id            AFw2kl5c7BmOpRxj8ny25g 
_model_server_result.datetime_utc      '2024-11-19 13:21:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5D9J 
#
_exptl.entry_id    5D9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5D9J 
_cell.length_a            60.585 
_cell.length_b            60.585 
_cell.length_c            95.98 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc2 A OE2 GLU 61 A GLU 61 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 89 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 89 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc5 A OE2 GLU 100 A GLU 100 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc6 A O ILE 101 A ILE 101 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc7 B MN MN . A MN 201 1_555 D O25 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc8 B MN MN . A MN 201 1_555 D O28 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc9 C MN MN . A MN 202 1_555 D O28 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc10 C MN MN . A MN 202 1_555 D O27 0N8 . A 0N8 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc11 C MN MN . A MN 202 1_555 E O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc12 C MN MN . A MN 202 1_555 E O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5D9J 
_atom_sites.fract_transf_matrix[1][1]    0.016506 
_atom_sites.fract_transf_matrix[1][2]    0.00953 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019059 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 201 201 MN MN . 
C 2 MN A 1 202 202 MN MN . 
D 3 0N8 A 1 203 1 0N8 0N8 . 
E 4 HOH A 1 301 63 HOH HOH . 
E 4 HOH A 2 302 65 HOH HOH . 
E 4 HOH A 3 303 27 HOH HOH . 
E 4 HOH A 4 304 64 HOH HOH . 
E 4 HOH A 5 305 38 HOH HOH . 
E 4 HOH A 6 306 59 HOH HOH . 
E 4 HOH A 7 307 17 HOH HOH . 
E 4 HOH A 8 308 50 HOH HOH . 
E 4 HOH A 9 309 5 HOH HOH . 
E 4 HOH A 10 310 58 HOH HOH . 
E 4 HOH A 11 311 6 HOH HOH . 
E 4 HOH A 12 312 11 HOH HOH . 
E 4 HOH A 13 313 2 HOH HOH . 
E 4 HOH A 14 314 45 HOH HOH . 
E 4 HOH A 15 315 23 HOH HOH . 
E 4 HOH A 16 316 42 HOH HOH . 
E 4 HOH A 17 317 62 HOH HOH . 
E 4 HOH A 18 318 12 HOH HOH . 
E 4 HOH A 19 319 34 HOH HOH . 
E 4 HOH A 20 320 49 HOH HOH . 
E 4 HOH A 21 321 18 HOH HOH . 
E 4 HOH A 22 322 30 HOH HOH . 
E 4 HOH A 23 323 20 HOH HOH . 
E 4 HOH A 24 324 47 HOH HOH . 
E 4 HOH A 25 325 29 HOH HOH . 
E 4 HOH A 26 326 28 HOH HOH . 
E 4 HOH A 27 327 66 HOH HOH . 
E 4 HOH A 28 328 19 HOH HOH . 
E 4 HOH A 29 329 3 HOH HOH . 
E 4 HOH A 30 330 31 HOH HOH . 
E 4 HOH A 31 331 9 HOH HOH . 
E 4 HOH A 32 332 43 HOH HOH . 
E 4 HOH A 33 333 1 HOH HOH . 
E 4 HOH A 34 334 8 HOH HOH . 
E 4 HOH A 35 335 37 HOH HOH . 
E 4 HOH A 36 336 7 HOH HOH . 
E 4 HOH A 37 337 24 HOH HOH . 
E 4 HOH A 38 338 41 HOH HOH . 
E 4 HOH A 39 339 44 HOH HOH . 
E 4 HOH A 40 340 39 HOH HOH . 
E 4 HOH A 41 341 40 HOH HOH . 
E 4 HOH A 42 342 14 HOH HOH . 
E 4 HOH A 43 343 26 HOH HOH . 
E 4 HOH A 44 344 16 HOH HOH . 
E 4 HOH A 45 345 35 HOH HOH . 
E 4 HOH A 46 346 15 HOH HOH . 
E 4 HOH A 47 347 56 HOH HOH . 
E 4 HOH A 48 348 51 HOH HOH . 
E 4 HOH A 49 349 10 HOH HOH . 
E 4 HOH A 50 350 33 HOH HOH . 
E 4 HOH A 51 351 22 HOH HOH . 
E 4 HOH A 52 352 60 HOH HOH . 
E 4 HOH A 53 353 36 HOH HOH . 
E 4 HOH A 54 354 25 HOH HOH . 
E 4 HOH A 55 355 32 HOH HOH . 
E 4 HOH A 56 356 55 HOH HOH . 
E 4 HOH A 57 357 4 HOH HOH . 
E 4 HOH A 58 358 54 HOH HOH . 
E 4 HOH A 59 359 53 HOH HOH . 
E 4 HOH A 60 360 52 HOH HOH . 
E 4 HOH A 61 361 61 HOH HOH . 
E 4 HOH A 62 362 13 HOH HOH . 
E 4 HOH A 63 363 21 HOH HOH . 
E 4 HOH A 64 364 48 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               82.237 
_atom_site.Cartn_y               90.794 
_atom_site.Cartn_z               6.221 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#