data_5D9K # _model_server_result.job_id Gjy8pnCoRh_5LHKDPOmqoA _model_server_result.datetime_utc '2024-10-15 11:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5D9K # _exptl.entry_id 5D9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.75 _cell.angle_gamma 90 _cell.entry_id 5D9K _cell.length_a 34.19 _cell.length_b 53.71 _cell.length_c 207.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C19 H23 F2 N5 O2' _chem_comp.formula_weight 391.415 _chem_comp.id 584 _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C7 584 sing 1 n n C10 C8 584 sing 2 n n C7 C11 584 sing 3 n n C7 C6 584 sing 4 n n C5 C6 584 sing 5 n n C5 N4 584 sing 6 n n C8 N4 584 sing 7 n n C8 C9 584 sing 8 n n N4 C2 584 sing 9 n n O1 C9 584 doub 10 n n O2 C17 584 sing 11 n n C9 N5 584 sing 12 n n F2 C18 584 sing 13 n n C17 C18 584 doub 14 n y C17 C16 584 sing 15 n y C18 C19 584 sing 16 n y C2 N2 584 doub 17 n y C2 C3 584 sing 18 n y N2 C1 584 sing 19 n y N5 C3 584 sing 20 n n N5 C13 584 sing 21 n n C16 F1 584 sing 22 n n C16 C15 584 doub 23 n y C19 C14 584 doub 24 n y C3 C4 584 doub 25 n y C15 C14 584 sing 26 n y C14 N3 584 sing 27 n n C1 N3 584 sing 28 n n C1 N1 584 doub 29 n y C4 N1 584 sing 30 n y O2 H1 584 sing 31 n n C11 H2 584 sing 32 n n C11 H3 584 sing 33 n n C11 H4 584 sing 34 n n C12 H5 584 sing 35 n n C12 H6 584 sing 36 n n C12 H7 584 sing 37 n n C13 H8 584 sing 38 n n C13 H9 584 sing 39 n n C13 H10 584 sing 40 n n C15 H11 584 sing 41 n n C19 H12 584 sing 42 n n C4 H13 584 sing 43 n n N3 H14 584 sing 44 n n C5 H15 584 sing 45 n n C5 H16 584 sing 46 n n C6 H17 584 sing 47 n n C6 H18 584 sing 48 n n C7 H19 584 sing 49 n n C8 H20 584 sing 50 n n C10 H21 584 sing 51 n n C10 H22 584 sing 52 n n C10 H23 584 sing 53 n n # _atom_sites.entry_id 5D9K _atom_sites.fract_transf_matrix[1][1] 0.029248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000894 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 584 A 1 401 1 584 LI1 . D 3 GOL A 1 402 1 GOL GOL . E 2 584 B 1 401 1 584 LI1 . F 3 GOL B 1 402 2 GOL GOL . G 4 HOH A 1 501 25 HOH HOH . G 4 HOH A 2 502 36 HOH HOH . G 4 HOH A 3 503 82 HOH HOH . G 4 HOH A 4 504 39 HOH HOH . G 4 HOH A 5 505 30 HOH HOH . G 4 HOH A 6 506 24 HOH HOH . G 4 HOH A 7 507 102 HOH HOH . G 4 HOH A 8 508 103 HOH HOH . G 4 HOH A 9 509 56 HOH HOH . G 4 HOH A 10 510 41 HOH HOH . G 4 HOH A 11 511 85 HOH HOH . G 4 HOH A 12 512 63 HOH HOH . G 4 HOH A 13 513 3 HOH HOH . G 4 HOH A 14 514 89 HOH HOH . G 4 HOH A 15 515 22 HOH HOH . G 4 HOH A 16 516 65 HOH HOH . G 4 HOH A 17 517 74 HOH HOH . G 4 HOH A 18 518 45 HOH HOH . G 4 HOH A 19 519 86 HOH HOH . G 4 HOH A 20 520 17 HOH HOH . G 4 HOH A 21 521 58 HOH HOH . G 4 HOH A 22 522 67 HOH HOH . G 4 HOH A 23 523 14 HOH HOH . G 4 HOH A 24 524 2 HOH HOH . G 4 HOH A 25 525 12 HOH HOH . G 4 HOH A 26 526 75 HOH HOH . G 4 HOH A 27 527 31 HOH HOH . G 4 HOH A 28 528 79 HOH HOH . G 4 HOH A 29 529 52 HOH HOH . G 4 HOH A 30 530 40 HOH HOH . G 4 HOH A 31 531 57 HOH HOH . G 4 HOH A 32 532 20 HOH HOH . G 4 HOH A 33 533 19 HOH HOH . G 4 HOH A 34 534 100 HOH HOH . G 4 HOH A 35 535 73 HOH HOH . G 4 HOH A 36 536 23 HOH HOH . G 4 HOH A 37 537 76 HOH HOH . G 4 HOH A 38 538 33 HOH HOH . G 4 HOH A 39 539 87 HOH HOH . G 4 HOH A 40 540 90 HOH HOH . G 4 HOH A 41 541 78 HOH HOH . G 4 HOH A 42 542 55 HOH HOH . G 4 HOH A 43 543 59 HOH HOH . G 4 HOH A 44 544 5 HOH HOH . G 4 HOH A 45 545 72 HOH HOH . G 4 HOH A 46 546 68 HOH HOH . G 4 HOH A 47 547 97 HOH HOH . G 4 HOH A 48 548 98 HOH HOH . G 4 HOH A 49 549 92 HOH HOH . H 4 HOH B 1 501 44 HOH HOH . H 4 HOH B 2 502 18 HOH HOH . H 4 HOH B 3 503 84 HOH HOH . H 4 HOH B 4 504 32 HOH HOH . H 4 HOH B 5 505 46 HOH HOH . H 4 HOH B 6 506 27 HOH HOH . H 4 HOH B 7 507 11 HOH HOH . H 4 HOH B 8 508 35 HOH HOH . H 4 HOH B 9 509 7 HOH HOH . H 4 HOH B 10 510 37 HOH HOH . H 4 HOH B 11 511 1 HOH HOH . H 4 HOH B 12 512 88 HOH HOH . H 4 HOH B 13 513 91 HOH HOH . H 4 HOH B 14 514 16 HOH HOH . H 4 HOH B 15 515 15 HOH HOH . H 4 HOH B 16 516 28 HOH HOH . H 4 HOH B 17 517 93 HOH HOH . H 4 HOH B 18 518 61 HOH HOH . H 4 HOH B 19 519 4 HOH HOH . H 4 HOH B 20 520 81 HOH HOH . H 4 HOH B 21 521 51 HOH HOH . H 4 HOH B 22 522 21 HOH HOH . H 4 HOH B 23 523 60 HOH HOH . H 4 HOH B 24 524 48 HOH HOH . H 4 HOH B 25 525 26 HOH HOH . H 4 HOH B 26 526 101 HOH HOH . H 4 HOH B 27 527 49 HOH HOH . H 4 HOH B 28 528 83 HOH HOH . H 4 HOH B 29 529 69 HOH HOH . H 4 HOH B 30 530 66 HOH HOH . H 4 HOH B 31 531 38 HOH HOH . H 4 HOH B 32 532 43 HOH HOH . H 4 HOH B 33 533 29 HOH HOH . H 4 HOH B 34 534 9 HOH HOH . H 4 HOH B 35 535 53 HOH HOH . H 4 HOH B 36 536 64 HOH HOH . H 4 HOH B 37 537 62 HOH HOH . H 4 HOH B 38 538 54 HOH HOH . H 4 HOH B 39 539 10 HOH HOH . H 4 HOH B 40 540 47 HOH HOH . H 4 HOH B 41 541 42 HOH HOH . H 4 HOH B 42 542 95 HOH HOH . H 4 HOH B 43 543 13 HOH HOH . H 4 HOH B 44 544 6 HOH HOH . H 4 HOH B 45 545 77 HOH HOH . H 4 HOH B 46 546 50 HOH HOH . H 4 HOH B 47 547 8 HOH HOH . H 4 HOH B 48 548 34 HOH HOH . H 4 HOH B 49 549 99 HOH HOH . H 4 HOH B 50 550 96 HOH HOH . H 4 HOH B 51 551 80 HOH HOH . H 4 HOH B 52 552 94 HOH HOH . H 4 HOH B 53 553 71 HOH HOH . H 4 HOH B 54 554 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 584 . . . E 2 -6.589 8.386 73.976 1 23.77 ? C1 584 401 B 1 HETATM 2 C C2 584 . . . E 2 -8.17 7.424 75.338 1 31.63 ? C2 584 401 B 1 HETATM 3 C C3 584 . . . E 2 -8.025 6.184 74.648 1 31.84 ? C3 584 401 B 1 HETATM 4 O O1 584 . . . E 2 -10.524 4.252 76.33 1 42.12 ? O1 584 401 B 1 HETATM 5 O O2 584 . . . E 2 -6.174 14.423 76.105 1 33.18 ? O2 584 401 B 1 HETATM 6 C C11 584 . . . E 2 -12.278 10.991 76.891 1 49.18 ? C11 584 401 B 1 HETATM 7 C C12 584 . . . E 2 -10.34 11.348 78.397 1 49.03 ? C12 584 401 B 1 HETATM 8 C C13 584 . . . E 2 -9.119 4.055 73.981 1 25.9 ? C13 584 401 B 1 HETATM 9 C C14 584 . . . E 2 -5.833 10.742 74.235 1 27.04 ? C14 584 401 B 1 HETATM 10 C C15 584 . . . E 2 -7.078 11.363 74.302 1 31.76 ? C15 584 401 B 1 HETATM 11 C C16 584 . . . E 2 -7.191 12.591 74.898 1 36.54 ? C16 584 401 B 1 HETATM 12 C C17 584 . . . E 2 -6.105 13.24 75.445 1 33.38 ? C17 584 401 B 1 HETATM 13 C C18 584 . . . E 2 -4.882 12.605 75.365 1 32.14 ? C18 584 401 B 1 HETATM 14 C C19 584 . . . E 2 -4.713 11.381 74.761 1 28.73 ? C19 584 401 B 1 HETATM 15 N N1 584 . . . E 2 -6.341 7.265 73.289 1 23.93 ? N1 584 401 B 1 HETATM 16 N N2 584 . . . E 2 -7.48 8.519 74.973 1 27.51 ? N2 584 401 B 1 HETATM 17 C C4 584 . . . E 2 -7.052 6.19 73.647 1 27.21 ? C4 584 401 B 1 HETATM 18 N N3 584 . . . E 2 -5.775 9.444 73.686 1 22.9 ? N3 584 401 B 1 HETATM 19 N N4 584 . . . E 2 -8.939 7.471 76.497 1 35.38 ? N4 584 401 B 1 HETATM 20 C C5 584 . . . E 2 -9.174 8.749 77.173 1 36.95 ? C5 584 401 B 1 HETATM 21 C C6 584 . . . E 2 -10.616 9.216 77.031 1 42.52 ? C6 584 401 B 1 HETATM 22 C C7 584 . . . E 2 -10.805 10.716 77.097 1 48.14 ? C7 584 401 B 1 HETATM 23 C C8 584 . . . E 2 -9.531 6.254 77.096 1 37.43 ? C8 584 401 B 1 HETATM 24 C C9 584 . . . E 2 -9.723 5.143 76.085 1 38.63 ? C9 584 401 B 1 HETATM 25 N N5 584 . . . E 2 -8.949 5.151 74.938 1 33.04 ? N5 584 401 B 1 HETATM 26 C C10 584 . . . E 2 -8.708 5.727 78.267 1 37.04 ? C10 584 401 B 1 HETATM 27 F F1 584 . . . E 2 -8.412 13.171 74.995 1 42.2 ? F1 584 401 B 1 HETATM 28 F F2 584 . . . E 2 -3.828 13.194 75.981 1 35.29 ? F2 584 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #