data_5D9L # _model_server_result.job_id 7uNhdE9PGQX4XjFbxra4Tw _model_server_result.datetime_utc '2024-12-03 12:17:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 5D9L # _exptl.entry_id 5D9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.268 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-(1H-pyrazole-3,4-diyl)diphenol" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.64 _cell.angle_gamma 90 _cell.entry_id 5D9L _cell.length_a 33.45 _cell.length_b 58.59 _cell.length_c 78.57 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 N2 O2' _chem_comp.formula_weight 252.268 _chem_comp.id 583 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-(1H-pyrazole-3,4-diyl)diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C14 583 sing 1 n n C11 C14 583 doub 2 n y C11 C7 583 sing 3 n y C14 C10 583 sing 4 n y C7 C3 583 doub 5 n y C10 C6 583 doub 6 n y C3 C6 583 sing 7 n y C3 C1 583 sing 8 n n O2 C15 583 sing 9 n n C12 C15 583 doub 10 n y C12 C8 583 sing 11 n y C15 C13 583 sing 12 n y C8 C5 583 doub 13 n y C13 C9 583 doub 14 n y C1 C2 583 sing 15 n y C1 C4 583 doub 16 n y C5 C9 583 sing 17 n y C5 C2 583 sing 18 n n C2 N1 583 doub 19 n y C4 N2 583 sing 20 n y N1 N2 583 sing 21 n y O1 H1 583 sing 22 n n O2 H2 583 sing 23 n n C11 H3 583 sing 24 n n C12 H4 583 sing 25 n n C13 H5 583 sing 26 n n C4 H6 583 sing 27 n n C6 H8 583 sing 28 n n C7 H9 583 sing 29 n n C8 H10 583 sing 30 n n C9 H11 583 sing 31 n n C10 H12 583 sing 32 n n N2 H7 583 sing 33 n n # _atom_sites.entry_id 5D9L _atom_sites.fract_transf_matrix[1][1] 0.029895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005616 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 583 A 1 1001 1001 583 LI1 . C 3 GOL A 1 1002 1 GOL GOL . D 4 HOH A 1 1101 53 HOH HOH . D 4 HOH A 2 1102 31 HOH HOH . D 4 HOH A 3 1103 112 HOH HOH . D 4 HOH A 4 1104 29 HOH HOH . D 4 HOH A 5 1105 54 HOH HOH . D 4 HOH A 6 1106 56 HOH HOH . D 4 HOH A 7 1107 140 HOH HOH . D 4 HOH A 8 1108 49 HOH HOH . D 4 HOH A 9 1109 14 HOH HOH . D 4 HOH A 10 1110 2 HOH HOH . D 4 HOH A 11 1111 142 HOH HOH . D 4 HOH A 12 1112 33 HOH HOH . D 4 HOH A 13 1113 122 HOH HOH . D 4 HOH A 14 1114 148 HOH HOH . D 4 HOH A 15 1115 46 HOH HOH . D 4 HOH A 16 1116 42 HOH HOH . D 4 HOH A 17 1117 16 HOH HOH . D 4 HOH A 18 1118 7 HOH HOH . D 4 HOH A 19 1119 91 HOH HOH . D 4 HOH A 20 1120 73 HOH HOH . D 4 HOH A 21 1121 65 HOH HOH . D 4 HOH A 22 1122 4 HOH HOH . D 4 HOH A 23 1123 20 HOH HOH . D 4 HOH A 24 1124 157 HOH HOH . D 4 HOH A 25 1125 94 HOH HOH . D 4 HOH A 26 1126 90 HOH HOH . D 4 HOH A 27 1127 89 HOH HOH . D 4 HOH A 28 1128 22 HOH HOH . D 4 HOH A 29 1129 152 HOH HOH . D 4 HOH A 30 1130 118 HOH HOH . D 4 HOH A 31 1131 87 HOH HOH . D 4 HOH A 32 1132 35 HOH HOH . D 4 HOH A 33 1133 165 HOH HOH . D 4 HOH A 34 1134 71 HOH HOH . D 4 HOH A 35 1135 63 HOH HOH . D 4 HOH A 36 1136 96 HOH HOH . D 4 HOH A 37 1137 48 HOH HOH . D 4 HOH A 38 1138 109 HOH HOH . D 4 HOH A 39 1139 3 HOH HOH . D 4 HOH A 40 1140 120 HOH HOH . D 4 HOH A 41 1141 113 HOH HOH . D 4 HOH A 42 1142 51 HOH HOH . D 4 HOH A 43 1143 79 HOH HOH . D 4 HOH A 44 1144 144 HOH HOH . D 4 HOH A 45 1145 61 HOH HOH . D 4 HOH A 46 1146 32 HOH HOH . D 4 HOH A 47 1147 55 HOH HOH . D 4 HOH A 48 1148 41 HOH HOH . D 4 HOH A 49 1149 10 HOH HOH . D 4 HOH A 50 1150 105 HOH HOH . D 4 HOH A 51 1151 38 HOH HOH . D 4 HOH A 52 1152 160 HOH HOH . D 4 HOH A 53 1153 88 HOH HOH . D 4 HOH A 54 1154 23 HOH HOH . D 4 HOH A 55 1155 85 HOH HOH . D 4 HOH A 56 1156 150 HOH HOH . D 4 HOH A 57 1157 92 HOH HOH . D 4 HOH A 58 1158 107 HOH HOH . D 4 HOH A 59 1159 77 HOH HOH . D 4 HOH A 60 1160 34 HOH HOH . D 4 HOH A 61 1161 36 HOH HOH . D 4 HOH A 62 1162 18 HOH HOH . D 4 HOH A 63 1163 95 HOH HOH . D 4 HOH A 64 1164 26 HOH HOH . D 4 HOH A 65 1165 67 HOH HOH . D 4 HOH A 66 1166 52 HOH HOH . D 4 HOH A 67 1167 11 HOH HOH . D 4 HOH A 68 1168 123 HOH HOH . D 4 HOH A 69 1169 124 HOH HOH . D 4 HOH A 70 1170 78 HOH HOH . D 4 HOH A 71 1171 68 HOH HOH . D 4 HOH A 72 1172 129 HOH HOH . D 4 HOH A 73 1173 115 HOH HOH . D 4 HOH A 74 1174 76 HOH HOH . D 4 HOH A 75 1175 27 HOH HOH . D 4 HOH A 76 1176 60 HOH HOH . D 4 HOH A 77 1177 161 HOH HOH . D 4 HOH A 78 1178 25 HOH HOH . D 4 HOH A 79 1179 28 HOH HOH . D 4 HOH A 80 1180 57 HOH HOH . D 4 HOH A 81 1181 110 HOH HOH . D 4 HOH A 82 1182 83 HOH HOH . D 4 HOH A 83 1183 149 HOH HOH . D 4 HOH A 84 1184 50 HOH HOH . D 4 HOH A 85 1185 58 HOH HOH . D 4 HOH A 86 1186 162 HOH HOH . D 4 HOH A 87 1187 75 HOH HOH . D 4 HOH A 88 1188 146 HOH HOH . D 4 HOH A 89 1189 6 HOH HOH . D 4 HOH A 90 1190 151 HOH HOH . D 4 HOH A 91 1191 133 HOH HOH . D 4 HOH A 92 1192 147 HOH HOH . D 4 HOH A 93 1193 5 HOH HOH . D 4 HOH A 94 1194 19 HOH HOH . D 4 HOH A 95 1195 114 HOH HOH . D 4 HOH A 96 1196 158 HOH HOH . D 4 HOH A 97 1197 9 HOH HOH . D 4 HOH A 98 1198 8 HOH HOH . D 4 HOH A 99 1199 154 HOH HOH . D 4 HOH A 100 1200 44 HOH HOH . D 4 HOH A 101 1201 80 HOH HOH . D 4 HOH A 102 1202 62 HOH HOH . D 4 HOH A 103 1203 159 HOH HOH . D 4 HOH A 104 1204 99 HOH HOH . D 4 HOH A 105 1205 21 HOH HOH . D 4 HOH A 106 1206 145 HOH HOH . D 4 HOH A 107 1207 39 HOH HOH . D 4 HOH A 108 1208 86 HOH HOH . D 4 HOH A 109 1209 132 HOH HOH . D 4 HOH A 110 1210 66 HOH HOH . D 4 HOH A 111 1211 164 HOH HOH . D 4 HOH A 112 1212 64 HOH HOH . D 4 HOH A 113 1213 128 HOH HOH . D 4 HOH A 114 1214 121 HOH HOH . D 4 HOH A 115 1215 13 HOH HOH . D 4 HOH A 116 1216 153 HOH HOH . D 4 HOH A 117 1217 84 HOH HOH . D 4 HOH A 118 1218 47 HOH HOH . D 4 HOH A 119 1219 43 HOH HOH . D 4 HOH A 120 1220 37 HOH HOH . D 4 HOH A 121 1221 69 HOH HOH . D 4 HOH A 122 1222 111 HOH HOH . D 4 HOH A 123 1223 40 HOH HOH . D 4 HOH A 124 1224 126 HOH HOH . D 4 HOH A 125 1225 139 HOH HOH . D 4 HOH A 126 1226 15 HOH HOH . D 4 HOH A 127 1227 136 HOH HOH . D 4 HOH A 128 1228 108 HOH HOH . D 4 HOH A 129 1229 141 HOH HOH . D 4 HOH A 130 1230 143 HOH HOH . D 4 HOH A 131 1231 101 HOH HOH . D 4 HOH A 132 1232 81 HOH HOH . D 4 HOH A 133 1233 59 HOH HOH . D 4 HOH A 134 1234 100 HOH HOH . D 4 HOH A 135 1235 98 HOH HOH . D 4 HOH A 136 1236 138 HOH HOH . D 4 HOH A 137 1237 74 HOH HOH . D 4 HOH A 138 1238 72 HOH HOH . D 4 HOH A 139 1239 30 HOH HOH . D 4 HOH A 140 1240 137 HOH HOH . D 4 HOH A 141 1241 24 HOH HOH . D 4 HOH A 142 1242 17 HOH HOH . D 4 HOH A 143 1243 125 HOH HOH . D 4 HOH A 144 1244 135 HOH HOH . D 4 HOH A 145 1245 119 HOH HOH . D 4 HOH A 146 1246 131 HOH HOH . D 4 HOH A 147 1247 156 HOH HOH . D 4 HOH A 148 1248 117 HOH HOH . D 4 HOH A 149 1249 127 HOH HOH . D 4 HOH A 150 1250 155 HOH HOH . D 4 HOH A 151 1251 163 HOH HOH . D 4 HOH A 152 1252 116 HOH HOH . D 4 HOH A 153 1253 134 HOH HOH . D 4 HOH A 154 1254 130 HOH HOH . D 4 HOH A 155 1255 1 HOH HOH . D 4 HOH A 156 1256 93 HOH HOH . D 4 HOH A 157 1257 82 HOH HOH . D 4 HOH A 158 1258 45 HOH HOH . D 4 HOH A 159 1259 103 HOH HOH . D 4 HOH A 160 1260 97 HOH HOH . D 4 HOH A 161 1261 12 HOH HOH . D 4 HOH A 162 1262 102 HOH HOH . D 4 HOH A 163 1263 70 HOH HOH . D 4 HOH A 164 1264 106 HOH HOH . D 4 HOH A 165 1265 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 583 . . . B 2 -1.547 11.334 27.637 1 11.29 ? C1 583 1001 A 1 HETATM 2 C C2 583 . . . B 2 -0.535 10.458 28.025 1 10.65 ? C2 583 1001 A 1 HETATM 3 C C3 583 . . . B 2 -2.733 11.08 26.774 1 11.08 ? C3 583 1001 A 1 HETATM 4 O O1 583 . . . B 2 -6.088 10.366 24.416 1 16.83 ? O1 583 1001 A 1 HETATM 5 O O2 583 . . . B 2 -0.049 5.001 26.807 1 19.44 ? O2 583 1001 A 1 HETATM 6 C C11 583 . . . B 2 -3.746 10.046 24.837 1 10.84 ? C11 583 1001 A 1 HETATM 7 C C12 583 . . . B 2 0.994 7.143 27.103 1 14.92 ? C12 583 1001 A 1 HETATM 8 C C13 583 . . . B 2 -1.348 6.821 27.546 1 14.61 ? C13 583 1001 A 1 HETATM 9 C C14 583 . . . B 2 -4.974 10.604 25.174 1 14.54 ? C14 583 1001 A 1 HETATM 10 C C15 583 . . . B 2 -0.121 6.313 27.148 1 16.71 ? C15 583 1001 A 1 HETATM 11 C C4 583 . . . B 2 -1.243 12.545 28.281 1 11.54 ? C4 583 1001 A 1 HETATM 12 C C5 583 . . . B 2 -0.37 9.013 27.796 1 12.19 ? C5 583 1001 A 1 HETATM 13 N N1 583 . . . B 2 0.306 11.152 28.825 1 10.14 ? N1 583 1001 A 1 HETATM 14 C C6 583 . . . B 2 -3.969 11.646 27.088 1 11.1 ? C6 583 1001 A 1 HETATM 15 C C7 583 . . . B 2 -2.635 10.286 25.63 1 8.63 ? C7 583 1001 A 1 HETATM 16 N N2 583 . . . B 2 -0.13 12.43 28.997 1 12.8 ? N2 583 1001 A 1 HETATM 17 C C8 583 . . . B 2 0.871 8.482 27.434 1 15.45 ? C8 583 1001 A 1 HETATM 18 C C9 583 . . . B 2 -1.469 8.161 27.866 1 14.27 ? C9 583 1001 A 1 HETATM 19 C C10 583 . . . B 2 -5.083 11.406 26.302 1 10.61 ? C10 583 1001 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #