data_5D9L
#
_model_server_result.job_id            VQRyWrzXaQJlbjbxEcMHVA 
_model_server_result.datetime_utc      '2024-10-22 21:50:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    5D9L 
#
_exptl.entry_id    5D9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.64 
_cell.angle_gamma         90 
_cell.entry_id            5D9L 
_cell.length_a            33.45 
_cell.length_b            58.59 
_cell.length_c            78.57 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 162 n n 
C1 C2 GOL sing 163 n n 
C1 H11 GOL sing 164 n n 
C1 H12 GOL sing 165 n n 
O1 HO1 GOL sing 166 n n 
C2 O2 GOL sing 167 n n 
C2 C3 GOL sing 168 n n 
C2 H2 GOL sing 169 n n 
O2 HO2 GOL sing 170 n n 
C3 O3 GOL sing 171 n n 
C3 H31 GOL sing 172 n n 
C3 H32 GOL sing 173 n n 
O3 HO3 GOL sing 174 n n 
#
_atom_sites.entry_id                     5D9L 
_atom_sites.fract_transf_matrix[1][1]    0.029895 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005616 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 583 A 1 1001 1001 583 LI1 . 
C 3 GOL A 1 1002 1 GOL GOL . 
D 4 HOH A 1 1101 53 HOH HOH . 
D 4 HOH A 2 1102 31 HOH HOH . 
D 4 HOH A 3 1103 112 HOH HOH . 
D 4 HOH A 4 1104 29 HOH HOH . 
D 4 HOH A 5 1105 54 HOH HOH . 
D 4 HOH A 6 1106 56 HOH HOH . 
D 4 HOH A 7 1107 140 HOH HOH . 
D 4 HOH A 8 1108 49 HOH HOH . 
D 4 HOH A 9 1109 14 HOH HOH . 
D 4 HOH A 10 1110 2 HOH HOH . 
D 4 HOH A 11 1111 142 HOH HOH . 
D 4 HOH A 12 1112 33 HOH HOH . 
D 4 HOH A 13 1113 122 HOH HOH . 
D 4 HOH A 14 1114 148 HOH HOH . 
D 4 HOH A 15 1115 46 HOH HOH . 
D 4 HOH A 16 1116 42 HOH HOH . 
D 4 HOH A 17 1117 16 HOH HOH . 
D 4 HOH A 18 1118 7 HOH HOH . 
D 4 HOH A 19 1119 91 HOH HOH . 
D 4 HOH A 20 1120 73 HOH HOH . 
D 4 HOH A 21 1121 65 HOH HOH . 
D 4 HOH A 22 1122 4 HOH HOH . 
D 4 HOH A 23 1123 20 HOH HOH . 
D 4 HOH A 24 1124 157 HOH HOH . 
D 4 HOH A 25 1125 94 HOH HOH . 
D 4 HOH A 26 1126 90 HOH HOH . 
D 4 HOH A 27 1127 89 HOH HOH . 
D 4 HOH A 28 1128 22 HOH HOH . 
D 4 HOH A 29 1129 152 HOH HOH . 
D 4 HOH A 30 1130 118 HOH HOH . 
D 4 HOH A 31 1131 87 HOH HOH . 
D 4 HOH A 32 1132 35 HOH HOH . 
D 4 HOH A 33 1133 165 HOH HOH . 
D 4 HOH A 34 1134 71 HOH HOH . 
D 4 HOH A 35 1135 63 HOH HOH . 
D 4 HOH A 36 1136 96 HOH HOH . 
D 4 HOH A 37 1137 48 HOH HOH . 
D 4 HOH A 38 1138 109 HOH HOH . 
D 4 HOH A 39 1139 3 HOH HOH . 
D 4 HOH A 40 1140 120 HOH HOH . 
D 4 HOH A 41 1141 113 HOH HOH . 
D 4 HOH A 42 1142 51 HOH HOH . 
D 4 HOH A 43 1143 79 HOH HOH . 
D 4 HOH A 44 1144 144 HOH HOH . 
D 4 HOH A 45 1145 61 HOH HOH . 
D 4 HOH A 46 1146 32 HOH HOH . 
D 4 HOH A 47 1147 55 HOH HOH . 
D 4 HOH A 48 1148 41 HOH HOH . 
D 4 HOH A 49 1149 10 HOH HOH . 
D 4 HOH A 50 1150 105 HOH HOH . 
D 4 HOH A 51 1151 38 HOH HOH . 
D 4 HOH A 52 1152 160 HOH HOH . 
D 4 HOH A 53 1153 88 HOH HOH . 
D 4 HOH A 54 1154 23 HOH HOH . 
D 4 HOH A 55 1155 85 HOH HOH . 
D 4 HOH A 56 1156 150 HOH HOH . 
D 4 HOH A 57 1157 92 HOH HOH . 
D 4 HOH A 58 1158 107 HOH HOH . 
D 4 HOH A 59 1159 77 HOH HOH . 
D 4 HOH A 60 1160 34 HOH HOH . 
D 4 HOH A 61 1161 36 HOH HOH . 
D 4 HOH A 62 1162 18 HOH HOH . 
D 4 HOH A 63 1163 95 HOH HOH . 
D 4 HOH A 64 1164 26 HOH HOH . 
D 4 HOH A 65 1165 67 HOH HOH . 
D 4 HOH A 66 1166 52 HOH HOH . 
D 4 HOH A 67 1167 11 HOH HOH . 
D 4 HOH A 68 1168 123 HOH HOH . 
D 4 HOH A 69 1169 124 HOH HOH . 
D 4 HOH A 70 1170 78 HOH HOH . 
D 4 HOH A 71 1171 68 HOH HOH . 
D 4 HOH A 72 1172 129 HOH HOH . 
D 4 HOH A 73 1173 115 HOH HOH . 
D 4 HOH A 74 1174 76 HOH HOH . 
D 4 HOH A 75 1175 27 HOH HOH . 
D 4 HOH A 76 1176 60 HOH HOH . 
D 4 HOH A 77 1177 161 HOH HOH . 
D 4 HOH A 78 1178 25 HOH HOH . 
D 4 HOH A 79 1179 28 HOH HOH . 
D 4 HOH A 80 1180 57 HOH HOH . 
D 4 HOH A 81 1181 110 HOH HOH . 
D 4 HOH A 82 1182 83 HOH HOH . 
D 4 HOH A 83 1183 149 HOH HOH . 
D 4 HOH A 84 1184 50 HOH HOH . 
D 4 HOH A 85 1185 58 HOH HOH . 
D 4 HOH A 86 1186 162 HOH HOH . 
D 4 HOH A 87 1187 75 HOH HOH . 
D 4 HOH A 88 1188 146 HOH HOH . 
D 4 HOH A 89 1189 6 HOH HOH . 
D 4 HOH A 90 1190 151 HOH HOH . 
D 4 HOH A 91 1191 133 HOH HOH . 
D 4 HOH A 92 1192 147 HOH HOH . 
D 4 HOH A 93 1193 5 HOH HOH . 
D 4 HOH A 94 1194 19 HOH HOH . 
D 4 HOH A 95 1195 114 HOH HOH . 
D 4 HOH A 96 1196 158 HOH HOH . 
D 4 HOH A 97 1197 9 HOH HOH . 
D 4 HOH A 98 1198 8 HOH HOH . 
D 4 HOH A 99 1199 154 HOH HOH . 
D 4 HOH A 100 1200 44 HOH HOH . 
D 4 HOH A 101 1201 80 HOH HOH . 
D 4 HOH A 102 1202 62 HOH HOH . 
D 4 HOH A 103 1203 159 HOH HOH . 
D 4 HOH A 104 1204 99 HOH HOH . 
D 4 HOH A 105 1205 21 HOH HOH . 
D 4 HOH A 106 1206 145 HOH HOH . 
D 4 HOH A 107 1207 39 HOH HOH . 
D 4 HOH A 108 1208 86 HOH HOH . 
D 4 HOH A 109 1209 132 HOH HOH . 
D 4 HOH A 110 1210 66 HOH HOH . 
D 4 HOH A 111 1211 164 HOH HOH . 
D 4 HOH A 112 1212 64 HOH HOH . 
D 4 HOH A 113 1213 128 HOH HOH . 
D 4 HOH A 114 1214 121 HOH HOH . 
D 4 HOH A 115 1215 13 HOH HOH . 
D 4 HOH A 116 1216 153 HOH HOH . 
D 4 HOH A 117 1217 84 HOH HOH . 
D 4 HOH A 118 1218 47 HOH HOH . 
D 4 HOH A 119 1219 43 HOH HOH . 
D 4 HOH A 120 1220 37 HOH HOH . 
D 4 HOH A 121 1221 69 HOH HOH . 
D 4 HOH A 122 1222 111 HOH HOH . 
D 4 HOH A 123 1223 40 HOH HOH . 
D 4 HOH A 124 1224 126 HOH HOH . 
D 4 HOH A 125 1225 139 HOH HOH . 
D 4 HOH A 126 1226 15 HOH HOH . 
D 4 HOH A 127 1227 136 HOH HOH . 
D 4 HOH A 128 1228 108 HOH HOH . 
D 4 HOH A 129 1229 141 HOH HOH . 
D 4 HOH A 130 1230 143 HOH HOH . 
D 4 HOH A 131 1231 101 HOH HOH . 
D 4 HOH A 132 1232 81 HOH HOH . 
D 4 HOH A 133 1233 59 HOH HOH . 
D 4 HOH A 134 1234 100 HOH HOH . 
D 4 HOH A 135 1235 98 HOH HOH . 
D 4 HOH A 136 1236 138 HOH HOH . 
D 4 HOH A 137 1237 74 HOH HOH . 
D 4 HOH A 138 1238 72 HOH HOH . 
D 4 HOH A 139 1239 30 HOH HOH . 
D 4 HOH A 140 1240 137 HOH HOH . 
D 4 HOH A 141 1241 24 HOH HOH . 
D 4 HOH A 142 1242 17 HOH HOH . 
D 4 HOH A 143 1243 125 HOH HOH . 
D 4 HOH A 144 1244 135 HOH HOH . 
D 4 HOH A 145 1245 119 HOH HOH . 
D 4 HOH A 146 1246 131 HOH HOH . 
D 4 HOH A 147 1247 156 HOH HOH . 
D 4 HOH A 148 1248 117 HOH HOH . 
D 4 HOH A 149 1249 127 HOH HOH . 
D 4 HOH A 150 1250 155 HOH HOH . 
D 4 HOH A 151 1251 163 HOH HOH . 
D 4 HOH A 152 1252 116 HOH HOH . 
D 4 HOH A 153 1253 134 HOH HOH . 
D 4 HOH A 154 1254 130 HOH HOH . 
D 4 HOH A 155 1255 1 HOH HOH . 
D 4 HOH A 156 1256 93 HOH HOH . 
D 4 HOH A 157 1257 82 HOH HOH . 
D 4 HOH A 158 1258 45 HOH HOH . 
D 4 HOH A 159 1259 103 HOH HOH . 
D 4 HOH A 160 1260 97 HOH HOH . 
D 4 HOH A 161 1261 12 HOH HOH . 
D 4 HOH A 162 1262 102 HOH HOH . 
D 4 HOH A 163 1263 70 HOH HOH . 
D 4 HOH A 164 1264 106 HOH HOH . 
D 4 HOH A 165 1265 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 15.266 3.493 -5.182 1 31.76 ? C1 GOL 1002 A 1 
HETATM 2 O O1 GOL . . . C 3 14.363 4.269 -4.407 1 34.26 ? O1 GOL 1002 A 1 
HETATM 3 C C2 GOL . . . C 3 15.334 2.086 -4.64 1 31.93 ? C2 GOL 1002 A 1 
HETATM 4 O O2 GOL . . . C 3 15.658 1.167 -5.684 1 33.96 ? O2 GOL 1002 A 1 
HETATM 5 C C3 GOL . . . C 3 16.344 1.98 -3.523 1 31.83 ? C3 GOL 1002 A 1 
HETATM 6 O O3 GOL . . . C 3 17.671 2.085 -4.008 1 36.67 ? O3 GOL 1002 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           6 
#