data_5DA3 # _model_server_result.job_id d56tt8g7O05EU9xKz5NZwg _model_server_result.datetime_utc '2024-12-23 03:46:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5da3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5DA3 # _exptl.entry_id 5DA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.14 _cell.angle_gamma 90 _cell.entry_id 5DA3 _cell.length_a 90.372 _cell.length_b 48.403 _cell.length_c 71.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id CXM _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CXM _struct_conn.ptnr1_auth_seq_id 184 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLU _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLU _struct_conn.ptnr2_auth_seq_id 185 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 211 n n C1 C2 GOL sing 212 n n C1 H11 GOL sing 213 n n C1 H12 GOL sing 214 n n O1 HO1 GOL sing 215 n n C2 O2 GOL sing 216 n n C2 C3 GOL sing 217 n n C2 H2 GOL sing 218 n n O2 HO2 GOL sing 219 n n C3 O3 GOL sing 220 n n C3 H31 GOL sing 221 n n C3 H32 GOL sing 222 n n O3 HO3 GOL sing 223 n n # _atom_sites.entry_id 5DA3 _atom_sites.fract_transf_matrix[1][1] 0.011065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002994 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 2 GOL A 1 502 2 GOL GOL . D 3 58V A 1 503 1 58V UNL . E 4 HOH A 1 601 91 HOH HOH . E 4 HOH A 2 602 161 HOH HOH . E 4 HOH A 3 603 120 HOH HOH . E 4 HOH A 4 604 124 HOH HOH . E 4 HOH A 5 605 118 HOH HOH . E 4 HOH A 6 606 88 HOH HOH . E 4 HOH A 7 607 113 HOH HOH . E 4 HOH A 8 608 149 HOH HOH . E 4 HOH A 9 609 147 HOH HOH . E 4 HOH A 10 610 174 HOH HOH . E 4 HOH A 11 611 184 HOH HOH . E 4 HOH A 12 612 99 HOH HOH . E 4 HOH A 13 613 104 HOH HOH . E 4 HOH A 14 614 75 HOH HOH . E 4 HOH A 15 615 6 HOH HOH . E 4 HOH A 16 616 143 HOH HOH . E 4 HOH A 17 617 107 HOH HOH . E 4 HOH A 18 618 158 HOH HOH . E 4 HOH A 19 619 33 HOH HOH . E 4 HOH A 20 620 20 HOH HOH . E 4 HOH A 21 621 155 HOH HOH . E 4 HOH A 22 622 146 HOH HOH . E 4 HOH A 23 623 81 HOH HOH . E 4 HOH A 24 624 128 HOH HOH . E 4 HOH A 25 625 8 HOH HOH . E 4 HOH A 26 626 76 HOH HOH . E 4 HOH A 27 627 101 HOH HOH . E 4 HOH A 28 628 24 HOH HOH . E 4 HOH A 29 629 58 HOH HOH . E 4 HOH A 30 630 51 HOH HOH . E 4 HOH A 31 631 45 HOH HOH . E 4 HOH A 32 632 80 HOH HOH . E 4 HOH A 33 633 100 HOH HOH . E 4 HOH A 34 634 150 HOH HOH . E 4 HOH A 35 635 79 HOH HOH . E 4 HOH A 36 636 190 HOH HOH . E 4 HOH A 37 637 72 HOH HOH . E 4 HOH A 38 638 73 HOH HOH . E 4 HOH A 39 639 177 HOH HOH . E 4 HOH A 40 640 176 HOH HOH . E 4 HOH A 41 641 134 HOH HOH . E 4 HOH A 42 642 180 HOH HOH . E 4 HOH A 43 643 169 HOH HOH . E 4 HOH A 44 644 25 HOH HOH . E 4 HOH A 45 645 131 HOH HOH . E 4 HOH A 46 646 137 HOH HOH . E 4 HOH A 47 647 66 HOH HOH . E 4 HOH A 48 648 34 HOH HOH . E 4 HOH A 49 649 108 HOH HOH . E 4 HOH A 50 650 9 HOH HOH . E 4 HOH A 51 651 90 HOH HOH . E 4 HOH A 52 652 78 HOH HOH . E 4 HOH A 53 653 165 HOH HOH . E 4 HOH A 54 654 114 HOH HOH . E 4 HOH A 55 655 178 HOH HOH . E 4 HOH A 56 656 183 HOH HOH . E 4 HOH A 57 657 86 HOH HOH . E 4 HOH A 58 658 112 HOH HOH . E 4 HOH A 59 659 92 HOH HOH . E 4 HOH A 60 660 27 HOH HOH . E 4 HOH A 61 661 30 HOH HOH . E 4 HOH A 62 662 4 HOH HOH . E 4 HOH A 63 663 83 HOH HOH . E 4 HOH A 64 664 163 HOH HOH . E 4 HOH A 65 665 16 HOH HOH . E 4 HOH A 66 666 37 HOH HOH . E 4 HOH A 67 667 126 HOH HOH . E 4 HOH A 68 668 60 HOH HOH . E 4 HOH A 69 669 159 HOH HOH . E 4 HOH A 70 670 40 HOH HOH . E 4 HOH A 71 671 36 HOH HOH . E 4 HOH A 72 672 43 HOH HOH . E 4 HOH A 73 673 38 HOH HOH . E 4 HOH A 74 674 29 HOH HOH . E 4 HOH A 75 675 54 HOH HOH . E 4 HOH A 76 676 53 HOH HOH . E 4 HOH A 77 677 192 HOH HOH . E 4 HOH A 78 678 46 HOH HOH . E 4 HOH A 79 679 71 HOH HOH . E 4 HOH A 80 680 186 HOH HOH . E 4 HOH A 81 681 63 HOH HOH . E 4 HOH A 82 682 23 HOH HOH . E 4 HOH A 83 683 189 HOH HOH . E 4 HOH A 84 684 11 HOH HOH . E 4 HOH A 85 685 121 HOH HOH . E 4 HOH A 86 686 138 HOH HOH . E 4 HOH A 87 687 41 HOH HOH . E 4 HOH A 88 688 48 HOH HOH . E 4 HOH A 89 689 62 HOH HOH . E 4 HOH A 90 690 67 HOH HOH . E 4 HOH A 91 691 125 HOH HOH . E 4 HOH A 92 692 185 HOH HOH . E 4 HOH A 93 693 170 HOH HOH . E 4 HOH A 94 694 13 HOH HOH . E 4 HOH A 95 695 84 HOH HOH . E 4 HOH A 96 696 94 HOH HOH . E 4 HOH A 97 697 111 HOH HOH . E 4 HOH A 98 698 151 HOH HOH . E 4 HOH A 99 699 164 HOH HOH . E 4 HOH A 100 700 57 HOH HOH . E 4 HOH A 101 701 167 HOH HOH . E 4 HOH A 102 702 162 HOH HOH . E 4 HOH A 103 703 18 HOH HOH . E 4 HOH A 104 704 31 HOH HOH . E 4 HOH A 105 705 156 HOH HOH . E 4 HOH A 106 706 122 HOH HOH . E 4 HOH A 107 707 153 HOH HOH . E 4 HOH A 108 708 182 HOH HOH . E 4 HOH A 109 709 59 HOH HOH . E 4 HOH A 110 710 152 HOH HOH . E 4 HOH A 111 711 64 HOH HOH . E 4 HOH A 112 712 129 HOH HOH . E 4 HOH A 113 713 85 HOH HOH . E 4 HOH A 114 714 171 HOH HOH . E 4 HOH A 115 715 14 HOH HOH . E 4 HOH A 116 716 175 HOH HOH . E 4 HOH A 117 717 119 HOH HOH . E 4 HOH A 118 718 87 HOH HOH . E 4 HOH A 119 719 136 HOH HOH . E 4 HOH A 120 720 26 HOH HOH . E 4 HOH A 121 721 97 HOH HOH . E 4 HOH A 122 722 117 HOH HOH . E 4 HOH A 123 723 130 HOH HOH . E 4 HOH A 124 724 15 HOH HOH . E 4 HOH A 125 725 110 HOH HOH . E 4 HOH A 126 726 1 HOH HOH . E 4 HOH A 127 727 65 HOH HOH . E 4 HOH A 128 728 96 HOH HOH . E 4 HOH A 129 729 95 HOH HOH . E 4 HOH A 130 730 168 HOH HOH . E 4 HOH A 131 731 74 HOH HOH . E 4 HOH A 132 732 19 HOH HOH . E 4 HOH A 133 733 105 HOH HOH . E 4 HOH A 134 734 56 HOH HOH . E 4 HOH A 135 735 157 HOH HOH . E 4 HOH A 136 736 28 HOH HOH . E 4 HOH A 137 737 160 HOH HOH . E 4 HOH A 138 738 32 HOH HOH . E 4 HOH A 139 739 187 HOH HOH . E 4 HOH A 140 740 70 HOH HOH . E 4 HOH A 141 741 173 HOH HOH . E 4 HOH A 142 742 93 HOH HOH . E 4 HOH A 143 743 106 HOH HOH . E 4 HOH A 144 744 10 HOH HOH . E 4 HOH A 145 745 2 HOH HOH . E 4 HOH A 146 746 154 HOH HOH . E 4 HOH A 147 747 44 HOH HOH . E 4 HOH A 148 748 132 HOH HOH . E 4 HOH A 149 749 7 HOH HOH . E 4 HOH A 150 750 109 HOH HOH . E 4 HOH A 151 751 115 HOH HOH . E 4 HOH A 152 752 22 HOH HOH . E 4 HOH A 153 753 98 HOH HOH . E 4 HOH A 154 754 21 HOH HOH . E 4 HOH A 155 755 68 HOH HOH . E 4 HOH A 156 756 69 HOH HOH . E 4 HOH A 157 757 17 HOH HOH . E 4 HOH A 158 758 141 HOH HOH . E 4 HOH A 159 759 52 HOH HOH . E 4 HOH A 160 760 102 HOH HOH . E 4 HOH A 161 761 127 HOH HOH . E 4 HOH A 162 762 50 HOH HOH . E 4 HOH A 163 763 5 HOH HOH . E 4 HOH A 164 764 166 HOH HOH . E 4 HOH A 165 765 144 HOH HOH . E 4 HOH A 166 766 55 HOH HOH . E 4 HOH A 167 767 77 HOH HOH . E 4 HOH A 168 768 89 HOH HOH . E 4 HOH A 169 769 61 HOH HOH . E 4 HOH A 170 770 172 HOH HOH . E 4 HOH A 171 771 103 HOH HOH . E 4 HOH A 172 772 42 HOH HOH . E 4 HOH A 173 773 116 HOH HOH . E 4 HOH A 174 774 3 HOH HOH . E 4 HOH A 175 775 191 HOH HOH . E 4 HOH A 176 776 188 HOH HOH . E 4 HOH A 177 777 139 HOH HOH . E 4 HOH A 178 778 179 HOH HOH . E 4 HOH A 179 779 135 HOH HOH . E 4 HOH A 180 780 39 HOH HOH . E 4 HOH A 181 781 12 HOH HOH . E 4 HOH A 182 782 142 HOH HOH . E 4 HOH A 183 783 145 HOH HOH . E 4 HOH A 184 784 181 HOH HOH . E 4 HOH A 185 785 49 HOH HOH . E 4 HOH A 186 786 47 HOH HOH . E 4 HOH A 187 787 35 HOH HOH . E 4 HOH A 188 788 123 HOH HOH . E 4 HOH A 189 789 133 HOH HOH . E 4 HOH A 190 790 148 HOH HOH . E 4 HOH A 191 791 82 HOH HOH . E 4 HOH A 192 792 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 9.064 -0.654 -7.583 1 20.04 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 7.939 -0.898 -8.396 1 20.64 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 10.158 -1.655 -7.945 1 21.1 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 9.623 -2.964 -7.914 1 22.37 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 11.288 -1.535 -6.929 1 20.31 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 12.247 -2.559 -7.117 1 21.07 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 564 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #