data_5DAF # _model_server_result.job_id Bbk94HGO7qZCnczqceS1uQ _model_server_result.datetime_utc '2025-03-09 02:21:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5daf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DAF # _exptl.entry_id 5DAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5aS,6S,9aS)-7-hydroxy-2,6,9a-trimethyl-3-(pyridin-3-yl)-4,5,5a,6,9,9a-hexahydro-2H-benzo[g]indazole-8-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DAF _cell.length_a 42.449 _cell.length_b 42.449 _cell.length_c 134.044 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x+y,y,-z+1/3 -1 0 0 0 1 0 0 0 -1 0 0 44.681333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 109 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 151 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id 58E _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 58E _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.778 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H22 N4 O' _chem_comp.formula_weight 334.415 _chem_comp.id 58E _chem_comp.mon_nstd_flag . _chem_comp.name (5aS,6S,9aS)-7-hydroxy-2,6,9a-trimethyl-3-(pyridin-3-yl)-4,5,5a,6,9,9a-hexahydro-2H-benzo[g]indazole-8-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 N22 58E doub 1 n y C23 C24 58E sing 2 n y N22 C21 58E sing 3 n y C24 C25 58E doub 4 n y C21 C20 58E doub 5 n y C25 C20 58E sing 6 n y C20 C13 58E sing 7 n n C19 N12 58E sing 8 n n C13 N12 58E sing 9 n y C13 C8 58E doub 10 n y N12 N11 58E sing 11 n y C8 C7 58E sing 12 n n C8 C9 58E sing 13 n y N11 C9 58E doub 14 n y C7 C6 58E sing 15 n n C9 C10 58E sing 16 n n C1 C10 58E sing 17 n n C1 C2 58E sing 18 n n C10 C5 58E sing 19 n n C10 C18 58E sing 20 n n C6 C5 58E sing 21 n n C5 C4 58E sing 22 n n C2 C14 58E sing 23 n n C2 C3 58E doub 24 n n C14 N15 58E trip 25 n n C17 C4 58E sing 26 n n C4 C3 58E sing 27 n n C3 O16 58E sing 28 n n O16 H1 58E sing 29 n n C4 H2 58E sing 30 n n C17 H3 58E sing 31 n n C17 H4 58E sing 32 n n C17 H5 58E sing 33 n n C5 H6 58E sing 34 n n C6 H7 58E sing 35 n n C6 H8 58E sing 36 n n C7 H9 58E sing 37 n n C7 H10 58E sing 38 n n C25 H11 58E sing 39 n n C24 H12 58E sing 40 n n C23 H13 58E sing 41 n n C21 H14 58E sing 42 n n C19 H15 58E sing 43 n n C19 H16 58E sing 44 n n C19 H17 58E sing 45 n n C18 H18 58E sing 46 n n C18 H19 58E sing 47 n n C18 H20 58E sing 48 n n C1 H21 58E sing 49 n n C1 H22 58E sing 50 n n # _atom_sites.entry_id 5DAF _atom_sites.fract_transf_matrix[1][1] 0.023558 _atom_sites.fract_transf_matrix[1][2] 0.013601 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 58E A 1 201 1 58E TX6 . C 3 HOH A 1 301 11 HOH HOH . C 3 HOH A 2 302 18 HOH HOH . C 3 HOH A 3 303 8 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 17 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 13 HOH HOH . C 3 HOH A 9 309 22 HOH HOH . C 3 HOH A 10 310 12 HOH HOH . C 3 HOH A 11 311 21 HOH HOH . C 3 HOH A 12 312 3 HOH HOH . C 3 HOH A 13 313 16 HOH HOH . C 3 HOH A 14 314 2 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 14 HOH HOH . C 3 HOH A 17 317 20 HOH HOH . C 3 HOH A 18 318 19 HOH HOH . C 3 HOH A 19 319 6 HOH HOH . C 3 HOH A 20 320 10 HOH HOH . C 3 HOH A 21 321 1 HOH HOH . C 3 HOH A 22 322 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 58E . . . B 2 -23.39 -7.243 13.624 1 80.13 ? O16 58E 201 A 1 HETATM 2 C C3 58E . . . B 2 -23.883 -6.387 12.72 1 82.6 ? C3 58E 201 A 1 HETATM 3 C C4 58E . . . B 2 -23.175 -5.053 12.532 1 80.83 ? C4 58E 201 A 1 HETATM 4 C C17 58E . . . B 2 -21.666 -5.276 12.432 1 78.11 ? C17 58E 201 A 1 HETATM 5 C C5 58E . . . B 2 -23.701 -4.264 11.318 1 79.45 ? C5 58E 201 A 1 HETATM 6 C C6 58E . . . B 2 -23.15 -2.827 11.236 1 75.65 ? C6 58E 201 A 1 HETATM 7 C C7 58E . . . B 2 -23.323 -2.176 9.857 1 78.02 ? C7 58E 201 A 1 HETATM 8 C C8 58E . . . B 2 -24.719 -2.476 9.366 1 80.43 ? C8 58E 201 A 1 HETATM 9 C C13 58E . . . B 2 -25.565 -1.938 8.261 1 79.05 ? C13 58E 201 A 1 HETATM 10 C C20 58E . . . B 2 -25.229 -0.882 7.258 1 76.05 ? C20 58E 201 A 1 HETATM 11 C C25 58E . . . B 2 -26.168 0.084 6.905 1 76.11 ? C25 58E 201 A 1 HETATM 12 C C24 58E . . . B 2 -25.837 1.051 5.958 1 77.34 ? C24 58E 201 A 1 HETATM 13 C C23 58E . . . B 2 -24.566 1.029 5.385 1 75.89 ? C23 58E 201 A 1 HETATM 14 N N22 58E . . . B 2 -23.675 0.088 5.744 1 76.53 ? N22 58E 201 A 1 HETATM 15 C C21 58E . . . B 2 -23.976 -0.856 6.652 1 76.43 ? C21 58E 201 A 1 HETATM 16 N N12 58E . . . B 2 -26.726 -2.628 8.346 1 81.33 ? N12 58E 201 A 1 HETATM 17 C C19 58E . . . B 2 -27.986 -2.595 7.551 1 81.45 ? C19 58E 201 A 1 HETATM 18 N N11 58E . . . B 2 -26.766 -3.573 9.392 1 79.4 ? N11 58E 201 A 1 HETATM 19 C C9 58E . . . B 2 -25.568 -3.492 10.002 1 80.49 ? C9 58E 201 A 1 HETATM 20 C C10 58E . . . B 2 -25.238 -4.354 11.183 1 80.61 ? C10 58E 201 A 1 HETATM 21 C C18 58E . . . B 2 -25.991 -3.762 12.384 1 80.72 ? C18 58E 201 A 1 HETATM 22 C C1 58E . . . B 2 -25.619 -5.833 10.977 1 80.49 ? C1 58E 201 A 1 HETATM 23 C C2 58E . . . B 2 -24.99 -6.732 12.02 1 82.63 ? C2 58E 201 A 1 HETATM 24 C C14 58E . . . B 2 -25.541 -7.852 12.221 1 85.42 ? C14 58E 201 A 1 HETATM 25 N N15 58E . . . B 2 -26.171 -8.818 12.371 1 88.62 ? N15 58E 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #