data_5DAG # _model_server_result.job_id Fjvnf7x73CbbrloY45PbQQ _model_server_result.datetime_utc '2025-07-30 12:45:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5DAG # _exptl.entry_id 5DAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DAG _cell.length_a 51.907 _cell.length_b 51.907 _cell.length_c 147.727 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 25 A CYS 25 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A SG CYS 28 A CYS 28 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 A SG CYS 42 A CYS 42 1_555 F ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 A SG CYS 47 A CYS 47 1_555 F ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 A ND1 HIS 52 A HIS 52 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 A SG CYS 55 A CYS 55 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc7 A SG CYS 68 A CYS 68 1_555 F ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 A SG CYS 71 A CYS 71 1_555 F ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc9 A SG CYS 82 A CYS 82 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 A SG CYS 85 A CYS 85 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 A ND1 HIS 102 A HIS 102 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc12 A SG CYS 105 A CYS 105 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc13 A SG CYS 137 A CYS 137 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc14 A SG CYS 140 A CYS 140 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc15 A SG CYS 157 A CYS 157 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc16 A SG CYS 162 A CYS 162 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc17 A ND1 HIS 167 A HIS 167 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc18 A SG CYS 170 A CYS 170 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc19 A SG CYS 194 A CYS 194 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc20 A ND1 HIS 197 A HIS 197 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DAG _atom_sites.fract_transf_matrix[1][1] 0.019265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 2 ZN A 1 302 2 ZN ZN . D 2 ZN A 1 303 3 ZN ZN . E 2 ZN A 1 304 4 ZN ZN . F 2 ZN A 1 305 5 ZN ZN . G 3 HOH A 1 401 75 HOH HOH . G 3 HOH A 2 402 67 HOH HOH . G 3 HOH A 3 403 124 HOH HOH . G 3 HOH A 4 404 33 HOH HOH . G 3 HOH A 5 405 66 HOH HOH . G 3 HOH A 6 406 51 HOH HOH . G 3 HOH A 7 407 41 HOH HOH . G 3 HOH A 8 408 116 HOH HOH . G 3 HOH A 9 409 44 HOH HOH . G 3 HOH A 10 410 27 HOH HOH . G 3 HOH A 11 411 7 HOH HOH . G 3 HOH A 12 412 81 HOH HOH . G 3 HOH A 13 413 38 HOH HOH . G 3 HOH A 14 414 58 HOH HOH . G 3 HOH A 15 415 49 HOH HOH . G 3 HOH A 16 416 36 HOH HOH . G 3 HOH A 17 417 64 HOH HOH . G 3 HOH A 18 418 168 HOH HOH . G 3 HOH A 19 419 46 HOH HOH . G 3 HOH A 20 420 92 HOH HOH . G 3 HOH A 21 421 19 HOH HOH . G 3 HOH A 22 422 10 HOH HOH . G 3 HOH A 23 423 4 HOH HOH . G 3 HOH A 24 424 45 HOH HOH . G 3 HOH A 25 425 56 HOH HOH . G 3 HOH A 26 426 57 HOH HOH . G 3 HOH A 27 427 129 HOH HOH . G 3 HOH A 28 428 5 HOH HOH . G 3 HOH A 29 429 84 HOH HOH . G 3 HOH A 30 430 52 HOH HOH . G 3 HOH A 31 431 8 HOH HOH . G 3 HOH A 32 432 82 HOH HOH . G 3 HOH A 33 433 62 HOH HOH . G 3 HOH A 34 434 71 HOH HOH . G 3 HOH A 35 435 118 HOH HOH . G 3 HOH A 36 436 73 HOH HOH . G 3 HOH A 37 437 54 HOH HOH . G 3 HOH A 38 438 16 HOH HOH . G 3 HOH A 39 439 14 HOH HOH . G 3 HOH A 40 440 39 HOH HOH . G 3 HOH A 41 441 112 HOH HOH . G 3 HOH A 42 442 11 HOH HOH . G 3 HOH A 43 443 93 HOH HOH . G 3 HOH A 44 444 26 HOH HOH . G 3 HOH A 45 445 59 HOH HOH . G 3 HOH A 46 446 18 HOH HOH . G 3 HOH A 47 447 1 HOH HOH . G 3 HOH A 48 448 78 HOH HOH . G 3 HOH A 49 449 28 HOH HOH . G 3 HOH A 50 450 13 HOH HOH . G 3 HOH A 51 451 60 HOH HOH . G 3 HOH A 52 452 80 HOH HOH . G 3 HOH A 53 453 68 HOH HOH . G 3 HOH A 54 454 42 HOH HOH . G 3 HOH A 55 455 48 HOH HOH . G 3 HOH A 56 456 108 HOH HOH . G 3 HOH A 57 457 22 HOH HOH . G 3 HOH A 58 458 9 HOH HOH . G 3 HOH A 59 459 88 HOH HOH . G 3 HOH A 60 460 23 HOH HOH . G 3 HOH A 61 461 30 HOH HOH . G 3 HOH A 62 462 31 HOH HOH . G 3 HOH A 63 463 111 HOH HOH . G 3 HOH A 64 464 6 HOH HOH . G 3 HOH A 65 465 15 HOH HOH . G 3 HOH A 66 466 34 HOH HOH . G 3 HOH A 67 467 3 HOH HOH . G 3 HOH A 68 468 122 HOH HOH . G 3 HOH A 69 469 12 HOH HOH . G 3 HOH A 70 470 70 HOH HOH . G 3 HOH A 71 471 21 HOH HOH . G 3 HOH A 72 472 24 HOH HOH . G 3 HOH A 73 473 55 HOH HOH . G 3 HOH A 74 474 50 HOH HOH . G 3 HOH A 75 475 29 HOH HOH . G 3 HOH A 76 476 63 HOH HOH . G 3 HOH A 77 477 20 HOH HOH . G 3 HOH A 78 478 97 HOH HOH . G 3 HOH A 79 479 17 HOH HOH . G 3 HOH A 80 480 37 HOH HOH . G 3 HOH A 81 481 53 HOH HOH . G 3 HOH A 82 482 140 HOH HOH . G 3 HOH A 83 483 35 HOH HOH . G 3 HOH A 84 484 40 HOH HOH . G 3 HOH A 85 485 154 HOH HOH . G 3 HOH A 86 486 25 HOH HOH . G 3 HOH A 87 487 77 HOH HOH . G 3 HOH A 88 488 61 HOH HOH . G 3 HOH A 89 489 69 HOH HOH . G 3 HOH A 90 490 2 HOH HOH . G 3 HOH A 91 491 32 HOH HOH . G 3 HOH A 92 492 115 HOH HOH . G 3 HOH A 93 493 134 HOH HOH . G 3 HOH A 94 494 83 HOH HOH . G 3 HOH A 95 495 91 HOH HOH . G 3 HOH A 96 496 135 HOH HOH . G 3 HOH A 97 497 102 HOH HOH . G 3 HOH A 98 498 100 HOH HOH . G 3 HOH A 99 499 79 HOH HOH . G 3 HOH A 100 500 72 HOH HOH . G 3 HOH A 101 501 43 HOH HOH . G 3 HOH A 102 502 76 HOH HOH . G 3 HOH A 103 503 120 HOH HOH . G 3 HOH A 104 504 117 HOH HOH . G 3 HOH A 105 505 90 HOH HOH . G 3 HOH A 106 506 167 HOH HOH . G 3 HOH A 107 507 113 HOH HOH . G 3 HOH A 108 508 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 30.993 _atom_site.Cartn_y 27.334 _atom_site.Cartn_z 57.559 _atom_site.occupancy 0.71 _atom_site.B_iso_or_equiv 21.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #