data_5DAK # _model_server_result.job_id dQAyDuvPmVULayZdJbkluA _model_server_result.datetime_utc '2025-01-03 03:14:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5DAK # _exptl.entry_id 5DAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 74.922 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARSENIC _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.26 _cell.angle_gamma 90 _cell.entry_id 5DAK _cell.length_a 74.629 _cell.length_b 95.509 _cell.length_c 68.247 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 14 B ARG 13 1_555 B N CSO 15 B CSO 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C CSO 15 B CSO 14 1_555 B N ALA 16 B ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula As _chem_comp.formula_weight 74.922 _chem_comp.id ARS _chem_comp.mon_nstd_flag . _chem_comp.name ARSENIC _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DAK _atom_sites.fract_transf_matrix[1][1] 0.0134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001945 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES A 1 301 212 MES MES . D 4 ARS A 1 302 1 ARS AS . E 3 MES B 1 301 213 MES MES . F 4 ARS B 1 302 2 ARS AS . G 5 HOH A 1 401 193 HOH HOH . G 5 HOH A 2 402 108 HOH HOH . G 5 HOH A 3 403 128 HOH HOH . G 5 HOH A 4 404 39 HOH HOH . G 5 HOH A 5 405 38 HOH HOH . G 5 HOH A 6 406 20 HOH HOH . G 5 HOH A 7 407 212 HOH HOH . G 5 HOH A 8 408 125 HOH HOH . G 5 HOH A 9 409 129 HOH HOH . G 5 HOH A 10 410 32 HOH HOH . G 5 HOH A 11 411 223 HOH HOH . G 5 HOH A 12 412 159 HOH HOH . G 5 HOH A 13 413 139 HOH HOH . G 5 HOH A 14 414 168 HOH HOH . G 5 HOH A 15 415 64 HOH HOH . G 5 HOH A 16 416 119 HOH HOH . G 5 HOH A 17 417 73 HOH HOH . G 5 HOH A 18 418 35 HOH HOH . G 5 HOH A 19 419 184 HOH HOH . G 5 HOH A 20 420 54 HOH HOH . G 5 HOH A 21 421 198 HOH HOH . G 5 HOH A 22 422 30 HOH HOH . G 5 HOH A 23 423 166 HOH HOH . G 5 HOH A 24 424 194 HOH HOH . G 5 HOH A 25 425 221 HOH HOH . G 5 HOH A 26 426 127 HOH HOH . G 5 HOH A 27 427 14 HOH HOH . G 5 HOH A 28 428 29 HOH HOH . G 5 HOH A 29 429 59 HOH HOH . G 5 HOH A 30 430 140 HOH HOH . G 5 HOH A 31 431 239 HOH HOH . G 5 HOH A 32 432 188 HOH HOH . G 5 HOH A 33 433 31 HOH HOH . G 5 HOH A 34 434 53 HOH HOH . G 5 HOH A 35 435 72 HOH HOH . G 5 HOH A 36 436 34 HOH HOH . G 5 HOH A 37 437 109 HOH HOH . G 5 HOH A 38 438 120 HOH HOH . G 5 HOH A 39 439 191 HOH HOH . G 5 HOH A 40 440 16 HOH HOH . G 5 HOH A 41 441 170 HOH HOH . G 5 HOH A 42 442 192 HOH HOH . G 5 HOH A 43 443 28 HOH HOH . G 5 HOH A 44 444 71 HOH HOH . G 5 HOH A 45 445 62 HOH HOH . G 5 HOH A 46 446 124 HOH HOH . G 5 HOH A 47 447 142 HOH HOH . G 5 HOH A 48 448 222 HOH HOH . G 5 HOH A 49 449 33 HOH HOH . G 5 HOH A 50 450 195 HOH HOH . G 5 HOH A 51 451 10 HOH HOH . G 5 HOH A 52 452 141 HOH HOH . G 5 HOH A 53 453 219 HOH HOH . G 5 HOH A 54 454 185 HOH HOH . G 5 HOH A 55 455 190 HOH HOH . G 5 HOH A 56 456 87 HOH HOH . G 5 HOH A 57 457 143 HOH HOH . G 5 HOH A 58 458 55 HOH HOH . G 5 HOH A 59 459 237 HOH HOH . G 5 HOH A 60 460 37 HOH HOH . G 5 HOH A 61 461 63 HOH HOH . G 5 HOH A 62 462 86 HOH HOH . G 5 HOH A 63 463 11 HOH HOH . G 5 HOH A 64 464 83 HOH HOH . G 5 HOH A 65 465 144 HOH HOH . G 5 HOH A 66 466 180 HOH HOH . G 5 HOH A 67 467 27 HOH HOH . G 5 HOH A 68 468 126 HOH HOH . G 5 HOH A 69 469 176 HOH HOH . G 5 HOH A 70 470 85 HOH HOH . G 5 HOH A 71 471 41 HOH HOH . G 5 HOH A 72 472 111 HOH HOH . G 5 HOH A 73 473 114 HOH HOH . G 5 HOH A 74 474 9 HOH HOH . G 5 HOH A 75 475 65 HOH HOH . G 5 HOH A 76 476 117 HOH HOH . G 5 HOH A 77 477 57 HOH HOH . G 5 HOH A 78 478 181 HOH HOH . G 5 HOH A 79 479 173 HOH HOH . G 5 HOH A 80 480 242 HOH HOH . G 5 HOH A 81 481 216 HOH HOH . G 5 HOH A 82 482 4 HOH HOH . G 5 HOH A 83 483 23 HOH HOH . G 5 HOH A 84 484 88 HOH HOH . G 5 HOH A 85 485 182 HOH HOH . G 5 HOH A 86 486 82 HOH HOH . G 5 HOH A 87 487 131 HOH HOH . G 5 HOH A 88 488 56 HOH HOH . G 5 HOH A 89 489 241 HOH HOH . G 5 HOH A 90 490 229 HOH HOH . G 5 HOH A 91 491 225 HOH HOH . G 5 HOH A 92 492 94 HOH HOH . G 5 HOH A 93 493 189 HOH HOH . G 5 HOH A 94 494 174 HOH HOH . G 5 HOH A 95 495 172 HOH HOH . G 5 HOH A 96 496 84 HOH HOH . G 5 HOH A 97 497 110 HOH HOH . G 5 HOH A 98 498 183 HOH HOH . G 5 HOH A 99 499 36 HOH HOH . G 5 HOH A 100 500 231 HOH HOH . G 5 HOH A 101 501 197 HOH HOH . G 5 HOH A 102 502 89 HOH HOH . G 5 HOH A 103 503 70 HOH HOH . G 5 HOH A 104 504 113 HOH HOH . G 5 HOH A 105 505 243 HOH HOH . G 5 HOH A 106 506 130 HOH HOH . G 5 HOH A 107 507 179 HOH HOH . G 5 HOH A 108 508 116 HOH HOH . G 5 HOH A 109 509 175 HOH HOH . G 5 HOH A 110 510 121 HOH HOH . G 5 HOH A 111 511 171 HOH HOH . G 5 HOH A 112 512 230 HOH HOH . G 5 HOH A 113 513 112 HOH HOH . G 5 HOH A 114 514 240 HOH HOH . G 5 HOH A 115 515 68 HOH HOH . H 5 HOH B 1 401 201 HOH HOH . H 5 HOH B 2 402 100 HOH HOH . H 5 HOH B 3 403 49 HOH HOH . H 5 HOH B 4 404 51 HOH HOH . H 5 HOH B 5 405 167 HOH HOH . H 5 HOH B 6 406 75 HOH HOH . H 5 HOH B 7 407 91 HOH HOH . H 5 HOH B 8 408 61 HOH HOH . H 5 HOH B 9 409 105 HOH HOH . H 5 HOH B 10 410 92 HOH HOH . H 5 HOH B 11 411 187 HOH HOH . H 5 HOH B 12 412 104 HOH HOH . H 5 HOH B 13 413 22 HOH HOH . H 5 HOH B 14 414 46 HOH HOH . H 5 HOH B 15 415 146 HOH HOH . H 5 HOH B 16 416 47 HOH HOH . H 5 HOH B 17 417 135 HOH HOH . H 5 HOH B 18 418 234 HOH HOH . H 5 HOH B 19 419 60 HOH HOH . H 5 HOH B 20 420 15 HOH HOH . H 5 HOH B 21 421 3 HOH HOH . H 5 HOH B 22 422 169 HOH HOH . H 5 HOH B 23 423 79 HOH HOH . H 5 HOH B 24 424 177 HOH HOH . H 5 HOH B 25 425 156 HOH HOH . H 5 HOH B 26 426 163 HOH HOH . H 5 HOH B 27 427 149 HOH HOH . H 5 HOH B 28 428 99 HOH HOH . H 5 HOH B 29 429 224 HOH HOH . H 5 HOH B 30 430 67 HOH HOH . H 5 HOH B 31 431 154 HOH HOH . H 5 HOH B 32 432 186 HOH HOH . H 5 HOH B 33 433 44 HOH HOH . H 5 HOH B 34 434 157 HOH HOH . H 5 HOH B 35 435 76 HOH HOH . H 5 HOH B 36 436 200 HOH HOH . H 5 HOH B 37 437 218 HOH HOH . H 5 HOH B 38 438 204 HOH HOH . H 5 HOH B 39 439 145 HOH HOH . H 5 HOH B 40 440 12 HOH HOH . H 5 HOH B 41 441 69 HOH HOH . H 5 HOH B 42 442 211 HOH HOH . H 5 HOH B 43 443 101 HOH HOH . H 5 HOH B 44 444 52 HOH HOH . H 5 HOH B 45 445 206 HOH HOH . H 5 HOH B 46 446 8 HOH HOH . H 5 HOH B 47 447 233 HOH HOH . H 5 HOH B 48 448 93 HOH HOH . H 5 HOH B 49 449 43 HOH HOH . H 5 HOH B 50 450 160 HOH HOH . H 5 HOH B 51 451 17 HOH HOH . H 5 HOH B 52 452 40 HOH HOH . H 5 HOH B 53 453 80 HOH HOH . H 5 HOH B 54 454 58 HOH HOH . H 5 HOH B 55 455 78 HOH HOH . H 5 HOH B 56 456 18 HOH HOH . H 5 HOH B 57 457 7 HOH HOH . H 5 HOH B 58 458 13 HOH HOH . H 5 HOH B 59 459 132 HOH HOH . H 5 HOH B 60 460 238 HOH HOH . H 5 HOH B 61 461 1 HOH HOH . H 5 HOH B 62 462 50 HOH HOH . H 5 HOH B 63 463 26 HOH HOH . H 5 HOH B 64 464 42 HOH HOH . H 5 HOH B 65 465 6 HOH HOH . H 5 HOH B 66 466 95 HOH HOH . H 5 HOH B 67 467 5 HOH HOH . H 5 HOH B 68 468 133 HOH HOH . H 5 HOH B 69 469 98 HOH HOH . H 5 HOH B 70 470 25 HOH HOH . H 5 HOH B 71 471 147 HOH HOH . H 5 HOH B 72 472 162 HOH HOH . H 5 HOH B 73 473 148 HOH HOH . H 5 HOH B 74 474 2 HOH HOH . H 5 HOH B 75 475 164 HOH HOH . H 5 HOH B 76 476 202 HOH HOH . H 5 HOH B 77 477 236 HOH HOH . H 5 HOH B 78 478 213 HOH HOH . H 5 HOH B 79 479 136 HOH HOH . H 5 HOH B 80 480 155 HOH HOH . H 5 HOH B 81 481 208 HOH HOH . H 5 HOH B 82 482 21 HOH HOH . H 5 HOH B 83 483 122 HOH HOH . H 5 HOH B 84 484 48 HOH HOH . H 5 HOH B 85 485 215 HOH HOH . H 5 HOH B 86 486 45 HOH HOH . H 5 HOH B 87 487 19 HOH HOH . H 5 HOH B 88 488 74 HOH HOH . H 5 HOH B 89 489 199 HOH HOH . H 5 HOH B 90 490 118 HOH HOH . H 5 HOH B 91 491 66 HOH HOH . H 5 HOH B 92 492 77 HOH HOH . H 5 HOH B 93 493 137 HOH HOH . H 5 HOH B 94 494 203 HOH HOH . H 5 HOH B 95 495 152 HOH HOH . H 5 HOH B 96 496 209 HOH HOH . H 5 HOH B 97 497 165 HOH HOH . H 5 HOH B 98 498 178 HOH HOH . H 5 HOH B 99 499 103 HOH HOH . H 5 HOH B 100 500 90 HOH HOH . H 5 HOH B 101 501 232 HOH HOH . H 5 HOH B 102 502 227 HOH HOH . H 5 HOH B 103 503 81 HOH HOH . H 5 HOH B 104 504 96 HOH HOH . H 5 HOH B 105 505 102 HOH HOH . H 5 HOH B 106 506 158 HOH HOH . H 5 HOH B 107 507 134 HOH HOH . H 5 HOH B 108 508 24 HOH HOH . H 5 HOH B 109 509 161 HOH HOH . H 5 HOH B 110 510 226 HOH HOH . H 5 HOH B 111 511 150 HOH HOH . H 5 HOH B 112 512 106 HOH HOH . H 5 HOH B 113 513 210 HOH HOH . H 5 HOH B 114 514 107 HOH HOH . H 5 HOH B 115 515 153 HOH HOH . H 5 HOH B 116 516 138 HOH HOH . H 5 HOH B 117 517 115 HOH HOH . H 5 HOH B 118 518 151 HOH HOH . H 5 HOH B 119 519 217 HOH HOH . H 5 HOH B 120 520 235 HOH HOH . H 5 HOH B 121 521 97 HOH HOH . H 5 HOH B 122 522 123 HOH HOH . H 5 HOH B 123 523 214 HOH HOH . H 5 HOH B 124 524 228 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AS _atom_site.label_atom_id AS _atom_site.label_comp_id ARS _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 73.234 _atom_site.Cartn_y 10.095 _atom_site.Cartn_z 79.225 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 56.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AS _atom_site.auth_comp_id ARS _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #