data_5DAV # _model_server_result.job_id OQ0_KTPYBdhTZ3ItWuxUrw _model_server_result.datetime_utc '2024-10-19 13:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5DAV # _exptl.entry_id 5DAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DAV _cell.length_a 73.05 _cell.length_b 120.77 _cell.length_c 66.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -73.05 0 -33.33 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 134 A HIS 134 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 A OD1 ASP 136 A ASP 136 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 A NE2 HIS 211 A HIS 211 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 B NI NI . A NI 401 1_555 D O1 TRS . A TRS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 B NI NI . A NI 401 1_555 D O3 TRS . A TRS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc6 B NI NI . A NI 401 1_555 D N TRS . A TRS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc7 G K K . A K 406 1_555 H O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.221 ? metalc ? metalc8 G K K . A K 406 1_555 H O HOH . A HOH 650 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc9 G K K . A K 406 1_555 H O HOH . A HOH 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.341 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DAV _atom_sites.fract_transf_matrix[1][1] 0.013689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 401 301 NI NI . C 3 58J A 1 402 303 58J LIG . D 4 TRS A 1 403 1 TRS TRS . E 5 BR A 1 404 2 BR BR . F 5 BR A 1 405 3 BR BR . G 6 K A 1 406 4 K K . H 7 HOH A 1 501 217 HOH HOH . H 7 HOH A 2 502 131 HOH HOH . H 7 HOH A 3 503 11 HOH HOH . H 7 HOH A 4 504 184 HOH HOH . H 7 HOH A 5 505 29 HOH HOH . H 7 HOH A 6 506 74 HOH HOH . H 7 HOH A 7 507 97 HOH HOH . H 7 HOH A 8 508 27 HOH HOH . H 7 HOH A 9 509 76 HOH HOH . H 7 HOH A 10 510 38 HOH HOH . H 7 HOH A 11 511 233 HOH HOH . H 7 HOH A 12 512 43 HOH HOH . H 7 HOH A 13 513 6 HOH HOH . H 7 HOH A 14 514 56 HOH HOH . H 7 HOH A 15 515 89 HOH HOH . H 7 HOH A 16 516 155 HOH HOH . H 7 HOH A 17 517 35 HOH HOH . H 7 HOH A 18 518 198 HOH HOH . H 7 HOH A 19 519 51 HOH HOH . H 7 HOH A 20 520 22 HOH HOH . H 7 HOH A 21 521 212 HOH HOH . H 7 HOH A 22 522 106 HOH HOH . H 7 HOH A 23 523 115 HOH HOH . H 7 HOH A 24 524 171 HOH HOH . H 7 HOH A 25 525 32 HOH HOH . H 7 HOH A 26 526 7 HOH HOH . H 7 HOH A 27 527 62 HOH HOH . H 7 HOH A 28 528 25 HOH HOH . H 7 HOH A 29 529 121 HOH HOH . H 7 HOH A 30 530 206 HOH HOH . H 7 HOH A 31 531 79 HOH HOH . H 7 HOH A 32 532 26 HOH HOH . H 7 HOH A 33 533 31 HOH HOH . H 7 HOH A 34 534 57 HOH HOH . H 7 HOH A 35 535 230 HOH HOH . H 7 HOH A 36 536 78 HOH HOH . H 7 HOH A 37 537 54 HOH HOH . H 7 HOH A 38 538 18 HOH HOH . H 7 HOH A 39 539 21 HOH HOH . H 7 HOH A 40 540 44 HOH HOH . H 7 HOH A 41 541 221 HOH HOH . H 7 HOH A 42 542 175 HOH HOH . H 7 HOH A 43 543 117 HOH HOH . H 7 HOH A 44 544 120 HOH HOH . H 7 HOH A 45 545 58 HOH HOH . H 7 HOH A 46 546 174 HOH HOH . H 7 HOH A 47 547 90 HOH HOH . H 7 HOH A 48 548 47 HOH HOH . H 7 HOH A 49 549 55 HOH HOH . H 7 HOH A 50 550 178 HOH HOH . H 7 HOH A 51 551 17 HOH HOH . H 7 HOH A 52 552 196 HOH HOH . H 7 HOH A 53 553 39 HOH HOH . H 7 HOH A 54 554 109 HOH HOH . H 7 HOH A 55 555 135 HOH HOH . H 7 HOH A 56 556 148 HOH HOH . H 7 HOH A 57 557 82 HOH HOH . H 7 HOH A 58 558 122 HOH HOH . H 7 HOH A 59 559 150 HOH HOH . H 7 HOH A 60 560 129 HOH HOH . H 7 HOH A 61 561 84 HOH HOH . H 7 HOH A 62 562 105 HOH HOH . H 7 HOH A 63 563 91 HOH HOH . H 7 HOH A 64 564 98 HOH HOH . H 7 HOH A 65 565 73 HOH HOH . H 7 HOH A 66 566 33 HOH HOH . H 7 HOH A 67 567 66 HOH HOH . H 7 HOH A 68 568 141 HOH HOH . H 7 HOH A 69 569 164 HOH HOH . H 7 HOH A 70 570 93 HOH HOH . H 7 HOH A 71 571 194 HOH HOH . H 7 HOH A 72 572 49 HOH HOH . H 7 HOH A 73 573 182 HOH HOH . H 7 HOH A 74 574 213 HOH HOH . H 7 HOH A 75 575 177 HOH HOH . H 7 HOH A 76 576 48 HOH HOH . H 7 HOH A 77 577 125 HOH HOH . H 7 HOH A 78 578 28 HOH HOH . H 7 HOH A 79 579 67 HOH HOH . H 7 HOH A 80 580 159 HOH HOH . H 7 HOH A 81 581 42 HOH HOH . H 7 HOH A 82 582 75 HOH HOH . H 7 HOH A 83 583 16 HOH HOH . H 7 HOH A 84 584 188 HOH HOH . H 7 HOH A 85 585 8 HOH HOH . H 7 HOH A 86 586 208 HOH HOH . H 7 HOH A 87 587 81 HOH HOH . H 7 HOH A 88 588 59 HOH HOH . H 7 HOH A 89 589 242 HOH HOH . H 7 HOH A 90 590 138 HOH HOH . H 7 HOH A 91 591 225 HOH HOH . H 7 HOH A 92 592 189 HOH HOH . H 7 HOH A 93 593 118 HOH HOH . H 7 HOH A 94 594 60 HOH HOH . H 7 HOH A 95 595 227 HOH HOH . H 7 HOH A 96 596 145 HOH HOH . H 7 HOH A 97 597 53 HOH HOH . H 7 HOH A 98 598 24 HOH HOH . H 7 HOH A 99 599 176 HOH HOH . H 7 HOH A 100 600 61 HOH HOH . H 7 HOH A 101 601 123 HOH HOH . H 7 HOH A 102 602 161 HOH HOH . H 7 HOH A 103 603 20 HOH HOH . H 7 HOH A 104 604 147 HOH HOH . H 7 HOH A 105 605 238 HOH HOH . H 7 HOH A 106 606 99 HOH HOH . H 7 HOH A 107 607 126 HOH HOH . H 7 HOH A 108 608 134 HOH HOH . H 7 HOH A 109 609 30 HOH HOH . H 7 HOH A 110 610 207 HOH HOH . H 7 HOH A 111 611 128 HOH HOH . H 7 HOH A 112 612 133 HOH HOH . H 7 HOH A 113 613 202 HOH HOH . H 7 HOH A 114 614 52 HOH HOH . H 7 HOH A 115 615 143 HOH HOH . H 7 HOH A 116 616 167 HOH HOH . H 7 HOH A 117 617 46 HOH HOH . H 7 HOH A 118 618 19 HOH HOH . H 7 HOH A 119 619 144 HOH HOH . H 7 HOH A 120 620 234 HOH HOH . H 7 HOH A 121 621 15 HOH HOH . H 7 HOH A 122 622 96 HOH HOH . H 7 HOH A 123 623 80 HOH HOH . H 7 HOH A 124 624 180 HOH HOH . H 7 HOH A 125 625 165 HOH HOH . H 7 HOH A 126 626 100 HOH HOH . H 7 HOH A 127 627 111 HOH HOH . H 7 HOH A 128 628 200 HOH HOH . H 7 HOH A 129 629 214 HOH HOH . H 7 HOH A 130 630 154 HOH HOH . H 7 HOH A 131 631 158 HOH HOH . H 7 HOH A 132 632 187 HOH HOH . H 7 HOH A 133 633 195 HOH HOH . H 7 HOH A 134 634 71 HOH HOH . H 7 HOH A 135 635 5 HOH HOH . H 7 HOH A 136 636 63 HOH HOH . H 7 HOH A 137 637 37 HOH HOH . H 7 HOH A 138 638 156 HOH HOH . H 7 HOH A 139 639 205 HOH HOH . H 7 HOH A 140 640 104 HOH HOH . H 7 HOH A 141 641 173 HOH HOH . H 7 HOH A 142 642 114 HOH HOH . H 7 HOH A 143 643 92 HOH HOH . H 7 HOH A 144 644 12 HOH HOH . H 7 HOH A 145 645 77 HOH HOH . H 7 HOH A 146 646 160 HOH HOH . H 7 HOH A 147 647 211 HOH HOH . H 7 HOH A 148 648 220 HOH HOH . H 7 HOH A 149 649 231 HOH HOH . H 7 HOH A 150 650 50 HOH HOH . H 7 HOH A 151 651 101 HOH HOH . H 7 HOH A 152 652 107 HOH HOH . H 7 HOH A 153 653 241 HOH HOH . H 7 HOH A 154 654 186 HOH HOH . H 7 HOH A 155 655 142 HOH HOH . H 7 HOH A 156 656 181 HOH HOH . H 7 HOH A 157 657 65 HOH HOH . H 7 HOH A 158 658 113 HOH HOH . H 7 HOH A 159 659 137 HOH HOH . H 7 HOH A 160 660 95 HOH HOH . H 7 HOH A 161 661 103 HOH HOH . H 7 HOH A 162 662 127 HOH HOH . H 7 HOH A 163 663 108 HOH HOH . H 7 HOH A 164 664 45 HOH HOH . H 7 HOH A 165 665 102 HOH HOH . H 7 HOH A 166 666 146 HOH HOH . H 7 HOH A 167 667 23 HOH HOH . H 7 HOH A 168 668 215 HOH HOH . H 7 HOH A 169 669 85 HOH HOH . H 7 HOH A 170 670 13 HOH HOH . H 7 HOH A 171 671 64 HOH HOH . H 7 HOH A 172 672 124 HOH HOH . H 7 HOH A 173 673 14 HOH HOH . H 7 HOH A 174 674 191 HOH HOH . H 7 HOH A 175 675 119 HOH HOH . H 7 HOH A 176 676 192 HOH HOH . H 7 HOH A 177 677 34 HOH HOH . H 7 HOH A 178 678 88 HOH HOH . H 7 HOH A 179 679 219 HOH HOH . H 7 HOH A 180 680 222 HOH HOH . H 7 HOH A 181 681 197 HOH HOH . H 7 HOH A 182 682 204 HOH HOH . H 7 HOH A 183 683 216 HOH HOH . H 7 HOH A 184 684 36 HOH HOH . H 7 HOH A 185 685 9 HOH HOH . H 7 HOH A 186 686 86 HOH HOH . H 7 HOH A 187 687 112 HOH HOH . H 7 HOH A 188 688 69 HOH HOH . H 7 HOH A 189 689 116 HOH HOH . H 7 HOH A 190 690 210 HOH HOH . H 7 HOH A 191 691 41 HOH HOH . H 7 HOH A 192 692 136 HOH HOH . H 7 HOH A 193 693 183 HOH HOH . H 7 HOH A 194 694 209 HOH HOH . H 7 HOH A 195 695 226 HOH HOH . H 7 HOH A 196 696 169 HOH HOH . H 7 HOH A 197 697 10 HOH HOH . H 7 HOH A 198 698 162 HOH HOH . H 7 HOH A 199 699 218 HOH HOH . H 7 HOH A 200 700 149 HOH HOH . H 7 HOH A 201 701 166 HOH HOH . H 7 HOH A 202 702 235 HOH HOH . H 7 HOH A 203 703 153 HOH HOH . H 7 HOH A 204 704 240 HOH HOH . H 7 HOH A 205 705 157 HOH HOH . H 7 HOH A 206 706 229 HOH HOH . H 7 HOH A 207 707 40 HOH HOH . H 7 HOH A 208 708 190 HOH HOH . H 7 HOH A 209 709 110 HOH HOH . H 7 HOH A 210 710 239 HOH HOH . H 7 HOH A 211 711 68 HOH HOH . H 7 HOH A 212 712 179 HOH HOH . H 7 HOH A 213 713 140 HOH HOH . H 7 HOH A 214 714 224 HOH HOH . H 7 HOH A 215 715 72 HOH HOH . H 7 HOH A 216 716 151 HOH HOH . H 7 HOH A 217 717 132 HOH HOH . H 7 HOH A 218 718 70 HOH HOH . H 7 HOH A 219 719 130 HOH HOH . H 7 HOH A 220 720 223 HOH HOH . H 7 HOH A 221 721 193 HOH HOH . H 7 HOH A 222 722 163 HOH HOH . H 7 HOH A 223 723 87 HOH HOH . H 7 HOH A 224 724 152 HOH HOH . H 7 HOH A 225 725 185 HOH HOH . H 7 HOH A 226 726 170 HOH HOH . H 7 HOH A 227 727 94 HOH HOH . H 7 HOH A 228 728 203 HOH HOH . H 7 HOH A 229 729 139 HOH HOH . H 7 HOH A 230 730 236 HOH HOH . H 7 HOH A 231 731 201 HOH HOH . H 7 HOH A 232 732 237 HOH HOH . H 7 HOH A 233 733 168 HOH HOH . H 7 HOH A 234 734 232 HOH HOH . H 7 HOH A 235 735 172 HOH HOH . H 7 HOH A 236 736 199 HOH HOH . H 7 HOH A 237 737 83 HOH HOH . H 7 HOH A 238 738 228 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x -25.978 _atom_site.Cartn_y -28.343 _atom_site.Cartn_z 0.417 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #