data_5DAX
#
_model_server_result.job_id            x5hK_K2lkr34ReQd3SglGA 
_model_server_result.datetime_utc      '2024-11-28 22:48:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dax 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5DAX 
#
_exptl.entry_id    5DAX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DAX 
_cell.length_a            73.29 
_cell.length_b            118.05 
_cell.length_c            67.31 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DAX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -73.29 0 -33.655 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 134 A HIS 134 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc2 A OD1 ASP 136 A ASP 136 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc3 A NE2 HIS 211 A HIS 211 1_555 B NI NI . A NI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc4 B NI NI . A NI 401 1_555 C O5 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc5 B NI NI . A NI 401 1_555 C O1 AKG . A AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc6 B NI NI . A NI 401 1_555 E O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DAX 
_atom_sites.fract_transf_matrix[1][1]    0.013644 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008471 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 401 301 NI NI . 
C 3 AKG A 1 402 302 AKG AKG . 
D 4 58L A 1 403 303 58L LIG . 
E 5 HOH A 1 501 244 HOH HOH . 
E 5 HOH A 2 502 96 HOH HOH . 
E 5 HOH A 3 503 87 HOH HOH . 
E 5 HOH A 4 504 145 HOH HOH . 
E 5 HOH A 5 505 66 HOH HOH . 
E 5 HOH A 6 506 257 HOH HOH . 
E 5 HOH A 7 507 225 HOH HOH . 
E 5 HOH A 8 508 14 HOH HOH . 
E 5 HOH A 9 509 7 HOH HOH . 
E 5 HOH A 10 510 1 HOH HOH . 
E 5 HOH A 11 511 227 HOH HOH . 
E 5 HOH A 12 512 41 HOH HOH . 
E 5 HOH A 13 513 199 HOH HOH . 
E 5 HOH A 14 514 34 HOH HOH . 
E 5 HOH A 15 515 77 HOH HOH . 
E 5 HOH A 16 516 63 HOH HOH . 
E 5 HOH A 17 517 3 HOH HOH . 
E 5 HOH A 18 518 97 HOH HOH . 
E 5 HOH A 19 519 12 HOH HOH . 
E 5 HOH A 20 520 36 HOH HOH . 
E 5 HOH A 21 521 112 HOH HOH . 
E 5 HOH A 22 522 23 HOH HOH . 
E 5 HOH A 23 523 61 HOH HOH . 
E 5 HOH A 24 524 32 HOH HOH . 
E 5 HOH A 25 525 68 HOH HOH . 
E 5 HOH A 26 526 26 HOH HOH . 
E 5 HOH A 27 527 57 HOH HOH . 
E 5 HOH A 28 528 25 HOH HOH . 
E 5 HOH A 29 529 71 HOH HOH . 
E 5 HOH A 30 530 135 HOH HOH . 
E 5 HOH A 31 531 4 HOH HOH . 
E 5 HOH A 32 532 73 HOH HOH . 
E 5 HOH A 33 533 49 HOH HOH . 
E 5 HOH A 34 534 17 HOH HOH . 
E 5 HOH A 35 535 104 HOH HOH . 
E 5 HOH A 36 536 65 HOH HOH . 
E 5 HOH A 37 537 22 HOH HOH . 
E 5 HOH A 38 538 204 HOH HOH . 
E 5 HOH A 39 539 15 HOH HOH . 
E 5 HOH A 40 540 62 HOH HOH . 
E 5 HOH A 41 541 38 HOH HOH . 
E 5 HOH A 42 542 192 HOH HOH . 
E 5 HOH A 43 543 216 HOH HOH . 
E 5 HOH A 44 544 21 HOH HOH . 
E 5 HOH A 45 545 74 HOH HOH . 
E 5 HOH A 46 546 149 HOH HOH . 
E 5 HOH A 47 547 79 HOH HOH . 
E 5 HOH A 48 548 5 HOH HOH . 
E 5 HOH A 49 549 53 HOH HOH . 
E 5 HOH A 50 550 114 HOH HOH . 
E 5 HOH A 51 551 150 HOH HOH . 
E 5 HOH A 52 552 98 HOH HOH . 
E 5 HOH A 53 553 94 HOH HOH . 
E 5 HOH A 54 554 37 HOH HOH . 
E 5 HOH A 55 555 243 HOH HOH . 
E 5 HOH A 56 556 142 HOH HOH . 
E 5 HOH A 57 557 50 HOH HOH . 
E 5 HOH A 58 558 72 HOH HOH . 
E 5 HOH A 59 559 28 HOH HOH . 
E 5 HOH A 60 560 46 HOH HOH . 
E 5 HOH A 61 561 8 HOH HOH . 
E 5 HOH A 62 562 45 HOH HOH . 
E 5 HOH A 63 563 51 HOH HOH . 
E 5 HOH A 64 564 20 HOH HOH . 
E 5 HOH A 65 565 31 HOH HOH . 
E 5 HOH A 66 566 10 HOH HOH . 
E 5 HOH A 67 567 147 HOH HOH . 
E 5 HOH A 68 568 19 HOH HOH . 
E 5 HOH A 69 569 102 HOH HOH . 
E 5 HOH A 70 570 133 HOH HOH . 
E 5 HOH A 71 571 47 HOH HOH . 
E 5 HOH A 72 572 40 HOH HOH . 
E 5 HOH A 73 573 30 HOH HOH . 
E 5 HOH A 74 574 153 HOH HOH . 
E 5 HOH A 75 575 152 HOH HOH . 
E 5 HOH A 76 576 208 HOH HOH . 
E 5 HOH A 77 577 24 HOH HOH . 
E 5 HOH A 78 578 85 HOH HOH . 
E 5 HOH A 79 579 178 HOH HOH . 
E 5 HOH A 80 580 124 HOH HOH . 
E 5 HOH A 81 581 110 HOH HOH . 
E 5 HOH A 82 582 105 HOH HOH . 
E 5 HOH A 83 583 141 HOH HOH . 
E 5 HOH A 84 584 130 HOH HOH . 
E 5 HOH A 85 585 29 HOH HOH . 
E 5 HOH A 86 586 170 HOH HOH . 
E 5 HOH A 87 587 83 HOH HOH . 
E 5 HOH A 88 588 56 HOH HOH . 
E 5 HOH A 89 589 188 HOH HOH . 
E 5 HOH A 90 590 120 HOH HOH . 
E 5 HOH A 91 591 13 HOH HOH . 
E 5 HOH A 92 592 185 HOH HOH . 
E 5 HOH A 93 593 171 HOH HOH . 
E 5 HOH A 94 594 91 HOH HOH . 
E 5 HOH A 95 595 146 HOH HOH . 
E 5 HOH A 96 596 219 HOH HOH . 
E 5 HOH A 97 597 16 HOH HOH . 
E 5 HOH A 98 598 139 HOH HOH . 
E 5 HOH A 99 599 99 HOH HOH . 
E 5 HOH A 100 600 11 HOH HOH . 
E 5 HOH A 101 601 107 HOH HOH . 
E 5 HOH A 102 602 27 HOH HOH . 
E 5 HOH A 103 603 88 HOH HOH . 
E 5 HOH A 104 604 52 HOH HOH . 
E 5 HOH A 105 605 18 HOH HOH . 
E 5 HOH A 106 606 203 HOH HOH . 
E 5 HOH A 107 607 155 HOH HOH . 
E 5 HOH A 108 608 127 HOH HOH . 
E 5 HOH A 109 609 220 HOH HOH . 
E 5 HOH A 110 610 106 HOH HOH . 
E 5 HOH A 111 611 176 HOH HOH . 
E 5 HOH A 112 612 2 HOH HOH . 
E 5 HOH A 113 613 177 HOH HOH . 
E 5 HOH A 114 614 131 HOH HOH . 
E 5 HOH A 115 615 239 HOH HOH . 
E 5 HOH A 116 616 44 HOH HOH . 
E 5 HOH A 117 617 75 HOH HOH . 
E 5 HOH A 118 618 253 HOH HOH . 
E 5 HOH A 119 619 265 HOH HOH . 
E 5 HOH A 120 620 255 HOH HOH . 
E 5 HOH A 121 621 194 HOH HOH . 
E 5 HOH A 122 622 90 HOH HOH . 
E 5 HOH A 123 623 162 HOH HOH . 
E 5 HOH A 124 624 161 HOH HOH . 
E 5 HOH A 125 625 249 HOH HOH . 
E 5 HOH A 126 626 6 HOH HOH . 
E 5 HOH A 127 627 35 HOH HOH . 
E 5 HOH A 128 628 200 HOH HOH . 
E 5 HOH A 129 629 254 HOH HOH . 
E 5 HOH A 130 630 128 HOH HOH . 
E 5 HOH A 131 631 151 HOH HOH . 
E 5 HOH A 132 632 93 HOH HOH . 
E 5 HOH A 133 633 9 HOH HOH . 
E 5 HOH A 134 634 132 HOH HOH . 
E 5 HOH A 135 635 169 HOH HOH . 
E 5 HOH A 136 636 82 HOH HOH . 
E 5 HOH A 137 637 207 HOH HOH . 
E 5 HOH A 138 638 206 HOH HOH . 
E 5 HOH A 139 639 248 HOH HOH . 
E 5 HOH A 140 640 180 HOH HOH . 
E 5 HOH A 141 641 166 HOH HOH . 
E 5 HOH A 142 642 260 HOH HOH . 
E 5 HOH A 143 643 122 HOH HOH . 
E 5 HOH A 144 644 80 HOH HOH . 
E 5 HOH A 145 645 250 HOH HOH . 
E 5 HOH A 146 646 233 HOH HOH . 
E 5 HOH A 147 647 81 HOH HOH . 
E 5 HOH A 148 648 165 HOH HOH . 
E 5 HOH A 149 649 236 HOH HOH . 
E 5 HOH A 150 650 164 HOH HOH . 
E 5 HOH A 151 651 167 HOH HOH . 
E 5 HOH A 152 652 143 HOH HOH . 
E 5 HOH A 153 653 59 HOH HOH . 
E 5 HOH A 154 654 111 HOH HOH . 
E 5 HOH A 155 655 115 HOH HOH . 
E 5 HOH A 156 656 140 HOH HOH . 
E 5 HOH A 157 657 222 HOH HOH . 
E 5 HOH A 158 658 55 HOH HOH . 
E 5 HOH A 159 659 144 HOH HOH . 
E 5 HOH A 160 660 173 HOH HOH . 
E 5 HOH A 161 661 247 HOH HOH . 
E 5 HOH A 162 662 181 HOH HOH . 
E 5 HOH A 163 663 251 HOH HOH . 
E 5 HOH A 164 664 214 HOH HOH . 
E 5 HOH A 165 665 262 HOH HOH . 
E 5 HOH A 166 666 123 HOH HOH . 
E 5 HOH A 167 667 69 HOH HOH . 
E 5 HOH A 168 668 179 HOH HOH . 
E 5 HOH A 169 669 116 HOH HOH . 
E 5 HOH A 170 670 191 HOH HOH . 
E 5 HOH A 171 671 264 HOH HOH . 
E 5 HOH A 172 672 160 HOH HOH . 
E 5 HOH A 173 673 109 HOH HOH . 
E 5 HOH A 174 674 193 HOH HOH . 
E 5 HOH A 175 675 136 HOH HOH . 
E 5 HOH A 176 676 184 HOH HOH . 
E 5 HOH A 177 677 240 HOH HOH . 
E 5 HOH A 178 678 174 HOH HOH . 
E 5 HOH A 179 679 67 HOH HOH . 
E 5 HOH A 180 680 58 HOH HOH . 
E 5 HOH A 181 681 100 HOH HOH . 
E 5 HOH A 182 682 189 HOH HOH . 
E 5 HOH A 183 683 256 HOH HOH . 
E 5 HOH A 184 684 226 HOH HOH . 
E 5 HOH A 185 685 237 HOH HOH . 
E 5 HOH A 186 686 168 HOH HOH . 
E 5 HOH A 187 687 134 HOH HOH . 
E 5 HOH A 188 688 223 HOH HOH . 
E 5 HOH A 189 689 70 HOH HOH . 
E 5 HOH A 190 690 190 HOH HOH . 
E 5 HOH A 191 691 201 HOH HOH . 
E 5 HOH A 192 692 259 HOH HOH . 
E 5 HOH A 193 693 158 HOH HOH . 
E 5 HOH A 194 694 54 HOH HOH . 
E 5 HOH A 195 695 213 HOH HOH . 
E 5 HOH A 196 696 196 HOH HOH . 
E 5 HOH A 197 697 33 HOH HOH . 
E 5 HOH A 198 698 212 HOH HOH . 
E 5 HOH A 199 699 217 HOH HOH . 
E 5 HOH A 200 700 103 HOH HOH . 
E 5 HOH A 201 701 242 HOH HOH . 
E 5 HOH A 202 702 119 HOH HOH . 
E 5 HOH A 203 703 215 HOH HOH . 
E 5 HOH A 204 704 231 HOH HOH . 
E 5 HOH A 205 705 117 HOH HOH . 
E 5 HOH A 206 706 125 HOH HOH . 
E 5 HOH A 207 707 172 HOH HOH . 
E 5 HOH A 208 708 163 HOH HOH . 
E 5 HOH A 209 709 84 HOH HOH . 
E 5 HOH A 210 710 235 HOH HOH . 
E 5 HOH A 211 711 118 HOH HOH . 
E 5 HOH A 212 712 241 HOH HOH . 
E 5 HOH A 213 713 187 HOH HOH . 
E 5 HOH A 214 714 86 HOH HOH . 
E 5 HOH A 215 715 245 HOH HOH . 
E 5 HOH A 216 716 39 HOH HOH . 
E 5 HOH A 217 717 148 HOH HOH . 
E 5 HOH A 218 718 202 HOH HOH . 
E 5 HOH A 219 719 230 HOH HOH . 
E 5 HOH A 220 720 126 HOH HOH . 
E 5 HOH A 221 721 229 HOH HOH . 
E 5 HOH A 222 722 263 HOH HOH . 
E 5 HOH A 223 723 113 HOH HOH . 
E 5 HOH A 224 724 154 HOH HOH . 
E 5 HOH A 225 725 183 HOH HOH . 
E 5 HOH A 226 726 43 HOH HOH . 
E 5 HOH A 227 727 234 HOH HOH . 
E 5 HOH A 228 728 129 HOH HOH . 
E 5 HOH A 229 729 209 HOH HOH . 
E 5 HOH A 230 730 95 HOH HOH . 
E 5 HOH A 231 731 252 HOH HOH . 
E 5 HOH A 232 732 157 HOH HOH . 
E 5 HOH A 233 733 48 HOH HOH . 
E 5 HOH A 234 734 64 HOH HOH . 
E 5 HOH A 235 735 246 HOH HOH . 
E 5 HOH A 236 736 195 HOH HOH . 
E 5 HOH A 237 737 182 HOH HOH . 
E 5 HOH A 238 738 211 HOH HOH . 
E 5 HOH A 239 739 121 HOH HOH . 
E 5 HOH A 240 740 101 HOH HOH . 
E 5 HOH A 241 741 76 HOH HOH . 
E 5 HOH A 242 742 89 HOH HOH . 
E 5 HOH A 243 743 232 HOH HOH . 
E 5 HOH A 244 744 197 HOH HOH . 
E 5 HOH A 245 745 175 HOH HOH . 
E 5 HOH A 246 746 210 HOH HOH . 
E 5 HOH A 247 747 261 HOH HOH . 
E 5 HOH A 248 748 198 HOH HOH . 
E 5 HOH A 249 749 258 HOH HOH . 
E 5 HOH A 250 750 42 HOH HOH . 
E 5 HOH A 251 751 221 HOH HOH . 
E 5 HOH A 252 752 238 HOH HOH . 
E 5 HOH A 253 753 224 HOH HOH . 
E 5 HOH A 254 754 78 HOH HOH . 
E 5 HOH A 255 755 156 HOH HOH . 
E 5 HOH A 256 756 205 HOH HOH . 
E 5 HOH A 257 757 137 HOH HOH . 
E 5 HOH A 258 758 108 HOH HOH . 
E 5 HOH A 259 759 159 HOH HOH . 
E 5 HOH A 260 760 186 HOH HOH . 
E 5 HOH A 261 761 138 HOH HOH . 
E 5 HOH A 262 762 218 HOH HOH . 
E 5 HOH A 263 763 228 HOH HOH . 
E 5 HOH A 264 764 92 HOH HOH . 
E 5 HOH A 265 765 60 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -21.273 
_atom_site.Cartn_y               -24.204 
_atom_site.Cartn_z               -5.781 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.44 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#