data_5DBE # _model_server_result.job_id jfBdwjO_YgHVpDdDc58ufQ _model_server_result.datetime_utc '2024-11-25 13:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5DBE # _exptl.entry_id 5DBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DBE _cell.length_a 112.643 _cell.length_b 112.643 _cell.length_c 45.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 5DBE _atom_sites.fract_transf_matrix[1][1] 0.008878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL X 1 401 402 GOL GOL . D 4 OAS X 1 402 403 OAS OAS . E 3 GOL X 1 403 404 GOL GOL . F 5 0JO X 1 404 1 0JO P1T . G 6 HOH X 1 501 502 HOH HOH . G 6 HOH X 2 502 506 HOH HOH . G 6 HOH X 3 503 501 HOH HOH . G 6 HOH X 4 504 519 HOH HOH . G 6 HOH X 5 505 504 HOH HOH . G 6 HOH X 6 506 507 HOH HOH . G 6 HOH X 7 507 503 HOH HOH . G 6 HOH X 8 508 516 HOH HOH . G 6 HOH X 9 509 509 HOH HOH . G 6 HOH X 10 510 505 HOH HOH . G 6 HOH X 11 511 511 HOH HOH . G 6 HOH X 12 512 508 HOH HOH . G 6 HOH X 13 513 514 HOH HOH . G 6 HOH X 14 514 510 HOH HOH . G 6 HOH X 15 515 534 HOH HOH . G 6 HOH X 16 516 513 HOH HOH . G 6 HOH X 17 517 517 HOH HOH . G 6 HOH X 18 518 515 HOH HOH . G 6 HOH X 19 519 512 HOH HOH . G 6 HOH X 20 520 518 HOH HOH . G 6 HOH X 21 521 521 HOH HOH . G 6 HOH X 22 522 520 HOH HOH . G 6 HOH X 23 523 526 HOH HOH . G 6 HOH X 24 524 525 HOH HOH . G 6 HOH X 25 525 522 HOH HOH . G 6 HOH X 26 526 523 HOH HOH . G 6 HOH X 27 527 540 HOH HOH . G 6 HOH X 28 528 524 HOH HOH . G 6 HOH X 29 529 529 HOH HOH . G 6 HOH X 30 530 528 HOH HOH . G 6 HOH X 31 531 527 HOH HOH . G 6 HOH X 32 532 537 HOH HOH . G 6 HOH X 33 533 530 HOH HOH . G 6 HOH X 34 534 531 HOH HOH . G 6 HOH X 35 535 532 HOH HOH . G 6 HOH X 36 536 533 HOH HOH . G 6 HOH X 37 537 539 HOH HOH . G 6 HOH X 38 538 536 HOH HOH . G 6 HOH X 39 539 535 HOH HOH . G 6 HOH X 40 540 538 HOH HOH . G 6 HOH X 41 541 541 HOH HOH . G 6 HOH X 42 542 543 HOH HOH . G 6 HOH X 43 543 542 HOH HOH . G 6 HOH X 44 544 544 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 14.004 22.64 12.462 1 43.78 ? C1 GOL 401 X 1 HETATM 2 O O1 GOL . . . C 3 15.075 21.868 12.985 1 44.47 ? O1 GOL 401 X 1 HETATM 3 C C2 GOL . . . C 3 14.384 23.275 11.124 1 42.15 ? C2 GOL 401 X 1 HETATM 4 O O2 GOL . . . C 3 13.207 23.684 10.453 1 47.59 ? O2 GOL 401 X 1 HETATM 5 C C3 GOL . . . C 3 15.14 22.263 10.261 1 41.58 ? C3 GOL 401 X 1 HETATM 6 O O3 GOL . . . C 3 15.396 22.815 8.989 1 45.63 ? O3 GOL 401 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #