data_5DBE # _model_server_result.job_id '_rCNReCQolu8C-B2STFQpA' _model_server_result.datetime_utc '2024-11-25 13:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5DBE # _exptl.entry_id 5DBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-ACETYLSERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DBE _cell.length_a 112.643 _cell.length_b 112.643 _cell.length_c 45.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id OAS _chem_comp.mon_nstd_flag n _chem_comp.name O-ACETYLSERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA OAS sing 284 n n N H2 OAS sing 285 n n N H OAS sing 286 n n CA CB OAS sing 287 n n CA C OAS sing 288 n n CA HA OAS sing 289 n n CB OG OAS sing 290 n n CB HB2 OAS sing 291 n n CB HB3 OAS sing 292 n n OG C1A OAS sing 293 n n C O OAS doub 294 n n C OXT OAS sing 295 n n C2A C1A OAS sing 296 n n C2A HC21 OAS sing 297 n n C2A HC22 OAS sing 298 n n C2A HC23 OAS sing 299 n n C1A OAC OAS doub 300 n n OXT HXT OAS sing 301 n n # _atom_sites.entry_id 5DBE _atom_sites.fract_transf_matrix[1][1] 0.008878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL X 1 401 402 GOL GOL . D 4 OAS X 1 402 403 OAS OAS . E 3 GOL X 1 403 404 GOL GOL . F 5 0JO X 1 404 1 0JO P1T . G 6 HOH X 1 501 502 HOH HOH . G 6 HOH X 2 502 506 HOH HOH . G 6 HOH X 3 503 501 HOH HOH . G 6 HOH X 4 504 519 HOH HOH . G 6 HOH X 5 505 504 HOH HOH . G 6 HOH X 6 506 507 HOH HOH . G 6 HOH X 7 507 503 HOH HOH . G 6 HOH X 8 508 516 HOH HOH . G 6 HOH X 9 509 509 HOH HOH . G 6 HOH X 10 510 505 HOH HOH . G 6 HOH X 11 511 511 HOH HOH . G 6 HOH X 12 512 508 HOH HOH . G 6 HOH X 13 513 514 HOH HOH . G 6 HOH X 14 514 510 HOH HOH . G 6 HOH X 15 515 534 HOH HOH . G 6 HOH X 16 516 513 HOH HOH . G 6 HOH X 17 517 517 HOH HOH . G 6 HOH X 18 518 515 HOH HOH . G 6 HOH X 19 519 512 HOH HOH . G 6 HOH X 20 520 518 HOH HOH . G 6 HOH X 21 521 521 HOH HOH . G 6 HOH X 22 522 520 HOH HOH . G 6 HOH X 23 523 526 HOH HOH . G 6 HOH X 24 524 525 HOH HOH . G 6 HOH X 25 525 522 HOH HOH . G 6 HOH X 26 526 523 HOH HOH . G 6 HOH X 27 527 540 HOH HOH . G 6 HOH X 28 528 524 HOH HOH . G 6 HOH X 29 529 529 HOH HOH . G 6 HOH X 30 530 528 HOH HOH . G 6 HOH X 31 531 527 HOH HOH . G 6 HOH X 32 532 537 HOH HOH . G 6 HOH X 33 533 530 HOH HOH . G 6 HOH X 34 534 531 HOH HOH . G 6 HOH X 35 535 532 HOH HOH . G 6 HOH X 36 536 533 HOH HOH . G 6 HOH X 37 537 539 HOH HOH . G 6 HOH X 38 538 536 HOH HOH . G 6 HOH X 39 539 535 HOH HOH . G 6 HOH X 40 540 538 HOH HOH . G 6 HOH X 41 541 541 HOH HOH . G 6 HOH X 42 542 543 HOH HOH . G 6 HOH X 43 543 542 HOH HOH . G 6 HOH X 44 544 544 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N OAS . . . D 4 19.007 1.167 11.9 1 54.86 ? N OAS 402 X 1 HETATM 2 C CA OAS . . . D 4 18.484 2.502 11.801 1 47.42 ? CA OAS 402 X 1 HETATM 3 C CB OAS . . . D 4 17.041 2.589 12.28 1 53.15 ? CB OAS 402 X 1 HETATM 4 O OG OAS . . . D 4 16.79 1.442 13.079 1 48.74 ? OG OAS 402 X 1 HETATM 5 C C OAS . . . D 4 19.249 3.535 12.609 1 53.75 ? C OAS 402 X 1 HETATM 6 O O OAS . . . D 4 20.298 4.125 12.323 1 53.29 ? O OAS 402 X 1 HETATM 7 C C2A OAS . . . D 4 14.46 1.764 13.285 1 51.32 ? C2A OAS 402 X 1 HETATM 8 C C1A OAS . . . D 4 15.788 1.653 13.975 1 48.9 ? C1A OAS 402 X 1 HETATM 9 O OAC OAS . . . D 4 16.152 2.198 15.015 1 51.22 ? OAC OAS 402 X 1 HETATM 10 O OXT OAS . . . D 4 18.657 3.822 13.803 1 53.45 ? OXT OAS 402 X 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #