data_5DBI
#
_model_server_result.job_id            TYcpRCVVbgy7zbp_6MXMgg 
_model_server_result.datetime_utc      '2024-10-19 15:32:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dbi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    5DBI 
#
_exptl.entry_id    5DBI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              166.217 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E,6E)-2,6-dimethylocta-2,6-dienedial 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DBI 
_cell.length_a            92.056 
_cell.length_b            94.629 
_cell.length_c            172.818 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DBI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
A,C,D,G 1 2 
B,E,F,H 2 1 
B,E,F,H 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -92.056 0 86.409 
3 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H14 O2' 
_chem_comp.formula_weight    166.217 
_chem_comp.id                XOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E,6E)-2,6-dimethylocta-2,6-dienedial 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     8-oxogeranial 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 XOG doub 451 n n 
C1 C2 XOG sing 452 n n 
C2 C9 XOG sing 453 n n 
C2 C3 XOG doub 454 e n 
C3 C4 XOG sing 455 n n 
C4 C5 XOG sing 456 n n 
C5 C6 XOG sing 457 n n 
C6 C7 XOG doub 458 e n 
C6 C10 XOG sing 459 n n 
C7 C8 XOG sing 460 n n 
C8 O2 XOG doub 461 n n 
C8 H2 XOG sing 462 n n 
C7 H4 XOG sing 463 n n 
C10 H5 XOG sing 464 n n 
C10 H6 XOG sing 465 n n 
C10 H7 XOG sing 466 n n 
C5 H8 XOG sing 467 n n 
C5 H9 XOG sing 468 n n 
C4 H10 XOG sing 469 n n 
C4 H11 XOG sing 470 n n 
C3 H12 XOG sing 471 n n 
C9 H13 XOG sing 472 n n 
C9 H14 XOG sing 473 n n 
C9 H15 XOG sing 474 n n 
C1 H16 XOG sing 475 n n 
#
_atom_sites.entry_id                     5DBI 
_atom_sites.fract_transf_matrix[1][1]    0.010863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 401 1 NAD NAD . 
D 3 XOG A 1 402 2 XOG OGN . 
E 2 NAD B 1 401 2 NAD NAD . 
F 3 XOG B 1 402 1 XOG OGN . 
G 4 HOH A 1 501 185 HOH HOH . 
G 4 HOH A 2 502 214 HOH HOH . 
G 4 HOH A 3 503 148 HOH HOH . 
G 4 HOH A 4 504 26 HOH HOH . 
G 4 HOH A 5 505 90 HOH HOH . 
G 4 HOH A 6 506 169 HOH HOH . 
G 4 HOH A 7 507 122 HOH HOH . 
G 4 HOH A 8 508 27 HOH HOH . 
G 4 HOH A 9 509 152 HOH HOH . 
G 4 HOH A 10 510 71 HOH HOH . 
G 4 HOH A 11 511 52 HOH HOH . 
G 4 HOH A 12 512 142 HOH HOH . 
G 4 HOH A 13 513 126 HOH HOH . 
G 4 HOH A 14 514 124 HOH HOH . 
G 4 HOH A 15 515 10 HOH HOH . 
G 4 HOH A 16 516 156 HOH HOH . 
G 4 HOH A 17 517 107 HOH HOH . 
G 4 HOH A 18 518 76 HOH HOH . 
G 4 HOH A 19 519 168 HOH HOH . 
G 4 HOH A 20 520 154 HOH HOH . 
G 4 HOH A 21 521 209 HOH HOH . 
G 4 HOH A 22 522 67 HOH HOH . 
G 4 HOH A 23 523 7 HOH HOH . 
G 4 HOH A 24 524 145 HOH HOH . 
G 4 HOH A 25 525 40 HOH HOH . 
G 4 HOH A 26 526 62 HOH HOH . 
G 4 HOH A 27 527 196 HOH HOH . 
G 4 HOH A 28 528 93 HOH HOH . 
G 4 HOH A 29 529 121 HOH HOH . 
G 4 HOH A 30 530 12 HOH HOH . 
G 4 HOH A 31 531 164 HOH HOH . 
G 4 HOH A 32 532 158 HOH HOH . 
G 4 HOH A 33 533 108 HOH HOH . 
G 4 HOH A 34 534 29 HOH HOH . 
G 4 HOH A 35 535 53 HOH HOH . 
G 4 HOH A 36 536 6 HOH HOH . 
G 4 HOH A 37 537 120 HOH HOH . 
G 4 HOH A 38 538 13 HOH HOH . 
G 4 HOH A 39 539 31 HOH HOH . 
G 4 HOH A 40 540 4 HOH HOH . 
G 4 HOH A 41 541 160 HOH HOH . 
G 4 HOH A 42 542 91 HOH HOH . 
G 4 HOH A 43 543 17 HOH HOH . 
G 4 HOH A 44 544 195 HOH HOH . 
G 4 HOH A 45 545 157 HOH HOH . 
G 4 HOH A 46 546 134 HOH HOH . 
G 4 HOH A 47 547 133 HOH HOH . 
G 4 HOH A 48 548 83 HOH HOH . 
G 4 HOH A 49 549 216 HOH HOH . 
G 4 HOH A 50 550 73 HOH HOH . 
G 4 HOH A 51 551 218 HOH HOH . 
G 4 HOH A 52 552 207 HOH HOH . 
G 4 HOH A 53 553 110 HOH HOH . 
G 4 HOH A 54 554 48 HOH HOH . 
G 4 HOH A 55 555 129 HOH HOH . 
G 4 HOH A 56 556 197 HOH HOH . 
G 4 HOH A 57 557 109 HOH HOH . 
G 4 HOH A 58 558 77 HOH HOH . 
G 4 HOH A 59 559 204 HOH HOH . 
G 4 HOH A 60 560 213 HOH HOH . 
G 4 HOH A 61 561 162 HOH HOH . 
G 4 HOH A 62 562 20 HOH HOH . 
G 4 HOH A 63 563 75 HOH HOH . 
G 4 HOH A 64 564 146 HOH HOH . 
G 4 HOH A 65 565 25 HOH HOH . 
G 4 HOH A 66 566 106 HOH HOH . 
G 4 HOH A 67 567 88 HOH HOH . 
G 4 HOH A 68 568 127 HOH HOH . 
G 4 HOH A 69 569 61 HOH HOH . 
G 4 HOH A 70 570 50 HOH HOH . 
G 4 HOH A 71 571 170 HOH HOH . 
G 4 HOH A 72 572 187 HOH HOH . 
G 4 HOH A 73 573 42 HOH HOH . 
G 4 HOH A 74 574 105 HOH HOH . 
G 4 HOH A 75 575 101 HOH HOH . 
G 4 HOH A 76 576 79 HOH HOH . 
G 4 HOH A 77 577 199 HOH HOH . 
G 4 HOH A 78 578 95 HOH HOH . 
G 4 HOH A 79 579 138 HOH HOH . 
G 4 HOH A 80 580 184 HOH HOH . 
G 4 HOH A 81 581 132 HOH HOH . 
G 4 HOH A 82 582 177 HOH HOH . 
G 4 HOH A 83 583 118 HOH HOH . 
G 4 HOH A 84 584 136 HOH HOH . 
G 4 HOH A 85 585 161 HOH HOH . 
G 4 HOH A 86 586 57 HOH HOH . 
G 4 HOH A 87 587 19 HOH HOH . 
G 4 HOH A 88 588 11 HOH HOH . 
G 4 HOH A 89 589 182 HOH HOH . 
G 4 HOH A 90 590 125 HOH HOH . 
G 4 HOH A 91 591 144 HOH HOH . 
G 4 HOH A 92 592 174 HOH HOH . 
G 4 HOH A 93 593 30 HOH HOH . 
G 4 HOH A 94 594 100 HOH HOH . 
G 4 HOH A 95 595 183 HOH HOH . 
G 4 HOH A 96 596 140 HOH HOH . 
G 4 HOH A 97 597 102 HOH HOH . 
G 4 HOH A 98 598 219 HOH HOH . 
G 4 HOH A 99 599 181 HOH HOH . 
G 4 HOH A 100 600 46 HOH HOH . 
G 4 HOH A 101 601 173 HOH HOH . 
G 4 HOH A 102 602 8 HOH HOH . 
G 4 HOH A 103 603 139 HOH HOH . 
G 4 HOH A 104 604 113 HOH HOH . 
G 4 HOH A 105 605 21 HOH HOH . 
G 4 HOH A 106 606 192 HOH HOH . 
H 4 HOH B 1 501 38 HOH HOH . 
H 4 HOH B 2 502 78 HOH HOH . 
H 4 HOH B 3 503 130 HOH HOH . 
H 4 HOH B 4 504 159 HOH HOH . 
H 4 HOH B 5 505 111 HOH HOH . 
H 4 HOH B 6 506 96 HOH HOH . 
H 4 HOH B 7 507 69 HOH HOH . 
H 4 HOH B 8 508 186 HOH HOH . 
H 4 HOH B 9 509 58 HOH HOH . 
H 4 HOH B 10 510 39 HOH HOH . 
H 4 HOH B 11 511 16 HOH HOH . 
H 4 HOH B 12 512 32 HOH HOH . 
H 4 HOH B 13 513 198 HOH HOH . 
H 4 HOH B 14 514 103 HOH HOH . 
H 4 HOH B 15 515 141 HOH HOH . 
H 4 HOH B 16 516 33 HOH HOH . 
H 4 HOH B 17 517 24 HOH HOH . 
H 4 HOH B 18 518 210 HOH HOH . 
H 4 HOH B 19 519 3 HOH HOH . 
H 4 HOH B 20 520 119 HOH HOH . 
H 4 HOH B 21 521 14 HOH HOH . 
H 4 HOH B 22 522 37 HOH HOH . 
H 4 HOH B 23 523 68 HOH HOH . 
H 4 HOH B 24 524 150 HOH HOH . 
H 4 HOH B 25 525 59 HOH HOH . 
H 4 HOH B 26 526 116 HOH HOH . 
H 4 HOH B 27 527 97 HOH HOH . 
H 4 HOH B 28 528 36 HOH HOH . 
H 4 HOH B 29 529 208 HOH HOH . 
H 4 HOH B 30 530 72 HOH HOH . 
H 4 HOH B 31 531 1 HOH HOH . 
H 4 HOH B 32 532 176 HOH HOH . 
H 4 HOH B 33 533 64 HOH HOH . 
H 4 HOH B 34 534 117 HOH HOH . 
H 4 HOH B 35 535 70 HOH HOH . 
H 4 HOH B 36 536 5 HOH HOH . 
H 4 HOH B 37 537 74 HOH HOH . 
H 4 HOH B 38 538 84 HOH HOH . 
H 4 HOH B 39 539 149 HOH HOH . 
H 4 HOH B 40 540 86 HOH HOH . 
H 4 HOH B 41 541 178 HOH HOH . 
H 4 HOH B 42 542 54 HOH HOH . 
H 4 HOH B 43 543 85 HOH HOH . 
H 4 HOH B 44 544 128 HOH HOH . 
H 4 HOH B 45 545 89 HOH HOH . 
H 4 HOH B 46 546 28 HOH HOH . 
H 4 HOH B 47 547 87 HOH HOH . 
H 4 HOH B 48 548 34 HOH HOH . 
H 4 HOH B 49 549 81 HOH HOH . 
H 4 HOH B 50 550 179 HOH HOH . 
H 4 HOH B 51 551 15 HOH HOH . 
H 4 HOH B 52 552 165 HOH HOH . 
H 4 HOH B 53 553 63 HOH HOH . 
H 4 HOH B 54 554 147 HOH HOH . 
H 4 HOH B 55 555 45 HOH HOH . 
H 4 HOH B 56 556 200 HOH HOH . 
H 4 HOH B 57 557 205 HOH HOH . 
H 4 HOH B 58 558 9 HOH HOH . 
H 4 HOH B 59 559 82 HOH HOH . 
H 4 HOH B 60 560 151 HOH HOH . 
H 4 HOH B 61 561 23 HOH HOH . 
H 4 HOH B 62 562 98 HOH HOH . 
H 4 HOH B 63 563 60 HOH HOH . 
H 4 HOH B 64 564 2 HOH HOH . 
H 4 HOH B 65 565 35 HOH HOH . 
H 4 HOH B 66 566 206 HOH HOH . 
H 4 HOH B 67 567 201 HOH HOH . 
H 4 HOH B 68 568 202 HOH HOH . 
H 4 HOH B 69 569 92 HOH HOH . 
H 4 HOH B 70 570 137 HOH HOH . 
H 4 HOH B 71 571 143 HOH HOH . 
H 4 HOH B 72 572 51 HOH HOH . 
H 4 HOH B 73 573 43 HOH HOH . 
H 4 HOH B 74 574 163 HOH HOH . 
H 4 HOH B 75 575 217 HOH HOH . 
H 4 HOH B 76 576 18 HOH HOH . 
H 4 HOH B 77 577 112 HOH HOH . 
H 4 HOH B 78 578 41 HOH HOH . 
H 4 HOH B 79 579 175 HOH HOH . 
H 4 HOH B 80 580 131 HOH HOH . 
H 4 HOH B 81 581 203 HOH HOH . 
H 4 HOH B 82 582 166 HOH HOH . 
H 4 HOH B 83 583 22 HOH HOH . 
H 4 HOH B 84 584 211 HOH HOH . 
H 4 HOH B 85 585 153 HOH HOH . 
H 4 HOH B 86 586 215 HOH HOH . 
H 4 HOH B 87 587 55 HOH HOH . 
H 4 HOH B 88 588 194 HOH HOH . 
H 4 HOH B 89 589 155 HOH HOH . 
H 4 HOH B 90 590 114 HOH HOH . 
H 4 HOH B 91 591 135 HOH HOH . 
H 4 HOH B 92 592 99 HOH HOH . 
H 4 HOH B 93 593 94 HOH HOH . 
H 4 HOH B 94 594 80 HOH HOH . 
H 4 HOH B 95 595 167 HOH HOH . 
H 4 HOH B 96 596 47 HOH HOH . 
H 4 HOH B 97 597 212 HOH HOH . 
H 4 HOH B 98 598 180 HOH HOH . 
H 4 HOH B 99 599 65 HOH HOH . 
H 4 HOH B 100 600 193 HOH HOH . 
H 4 HOH B 101 601 123 HOH HOH . 
H 4 HOH B 102 602 189 HOH HOH . 
H 4 HOH B 103 603 49 HOH HOH . 
H 4 HOH B 104 604 66 HOH HOH . 
H 4 HOH B 105 605 115 HOH HOH . 
H 4 HOH B 106 606 190 HOH HOH . 
H 4 HOH B 107 607 172 HOH HOH . 
H 4 HOH B 108 608 188 HOH HOH . 
H 4 HOH B 109 609 104 HOH HOH . 
H 4 HOH B 110 610 56 HOH HOH . 
H 4 HOH B 111 611 44 HOH HOH . 
H 4 HOH B 112 612 171 HOH HOH . 
H 4 HOH B 113 613 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 XOG . . . F 3 3.54 -15.913 9.5 1 44.19 ? O2 XOG 402 B 1 
HETATM 2 C C8 XOG . . . F 3 3.755 -15.208 10.463 1 42.87 ? C8 XOG 402 B 1 
HETATM 3 C C7 XOG . . . F 3 4.367 -13.91 10.228 1 43.69 ? C7 XOG 402 B 1 
HETATM 4 C C6 XOG . . . F 3 4.497 -12.907 11.343 1 52.52 ? C6 XOG 402 B 1 
HETATM 5 C C10 XOG . . . F 3 4.254 -13.305 12.775 1 55.91 ? C10 XOG 402 B 1 
HETATM 6 C C5 XOG . . . F 3 5.001 -11.492 11.03 1 48.41 ? C5 XOG 402 B 1 
HETATM 7 C C4 XOG . . . F 3 6.325 -11.575 10.321 1 53.43 ? C4 XOG 402 B 1 
HETATM 8 C C3 XOG . . . F 3 6.773 -10.151 10.136 1 50.24 ? C3 XOG 402 B 1 
HETATM 9 C C2 XOG . . . F 3 7.976 -9.594 10.828 1 57.52 ? C2 XOG 402 B 1 
HETATM 10 C C9 XOG . . . F 3 8.841 -10.439 11.737 1 62.64 ? C9 XOG 402 B 1 
HETATM 11 C C1 XOG . . . F 3 8.293 -8.133 10.593 1 55.03 ? C1 XOG 402 B 1 
HETATM 12 O O1 XOG . . . F 3 7.555 -7.495 9.857 1 75.8 ? O1 XOG 402 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#