data_5DBV # _model_server_result.job_id YfjXa4qzauvY-ZfOMLf5Hg _model_server_result.datetime_utc '2024-12-26 22:57:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dbv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 5DBV # _exptl.entry_id 5DBV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DBV _cell.length_a 138.264 _cell.length_b 138.264 _cell.length_c 84.445 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DBV _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5DBV _atom_sites.fract_transf_matrix[1][1] 0.007233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 1463 SO4 SO4 . C 2 SO4 A 1 502 1464 SO4 SO4 . D 3 COA A 1 503 1 COA COA . E 4 ACT A 1 504 1 ACT ACT . F 4 ACT A 1 505 2 ACT ACT . G 4 ACT A 1 506 3 ACT ACT . H 4 ACT A 1 507 4 ACT ACT . I 2 SO4 A 1 508 1 SO4 SO4 . J 5 HOH A 1 601 256 HOH HOH . J 5 HOH A 2 602 342 HOH HOH . J 5 HOH A 3 603 244 HOH HOH . J 5 HOH A 4 604 3 HOH HOH . J 5 HOH A 5 605 46 HOH HOH . J 5 HOH A 6 606 21 HOH HOH . J 5 HOH A 7 607 150 HOH HOH . J 5 HOH A 8 608 117 HOH HOH . J 5 HOH A 9 609 257 HOH HOH . J 5 HOH A 10 610 47 HOH HOH . J 5 HOH A 11 611 111 HOH HOH . J 5 HOH A 12 612 98 HOH HOH . J 5 HOH A 13 613 71 HOH HOH . J 5 HOH A 14 614 159 HOH HOH . J 5 HOH A 15 615 23 HOH HOH . J 5 HOH A 16 616 241 HOH HOH . J 5 HOH A 17 617 72 HOH HOH . J 5 HOH A 18 618 268 HOH HOH . J 5 HOH A 19 619 132 HOH HOH . J 5 HOH A 20 620 162 HOH HOH . J 5 HOH A 21 621 109 HOH HOH . J 5 HOH A 22 622 156 HOH HOH . J 5 HOH A 23 623 205 HOH HOH . J 5 HOH A 24 624 238 HOH HOH . J 5 HOH A 25 625 177 HOH HOH . J 5 HOH A 26 626 49 HOH HOH . J 5 HOH A 27 627 346 HOH HOH . J 5 HOH A 28 628 81 HOH HOH . J 5 HOH A 29 629 104 HOH HOH . J 5 HOH A 30 630 4 HOH HOH . J 5 HOH A 31 631 182 HOH HOH . J 5 HOH A 32 632 309 HOH HOH . J 5 HOH A 33 633 66 HOH HOH . J 5 HOH A 34 634 315 HOH HOH . J 5 HOH A 35 635 317 HOH HOH . J 5 HOH A 36 636 80 HOH HOH . J 5 HOH A 37 637 107 HOH HOH . J 5 HOH A 38 638 336 HOH HOH . J 5 HOH A 39 639 175 HOH HOH . J 5 HOH A 40 640 332 HOH HOH . J 5 HOH A 41 641 341 HOH HOH . J 5 HOH A 42 642 16 HOH HOH . J 5 HOH A 43 643 108 HOH HOH . J 5 HOH A 44 644 65 HOH HOH . J 5 HOH A 45 645 127 HOH HOH . J 5 HOH A 46 646 11 HOH HOH . J 5 HOH A 47 647 293 HOH HOH . J 5 HOH A 48 648 102 HOH HOH . J 5 HOH A 49 649 137 HOH HOH . J 5 HOH A 50 650 17 HOH HOH . J 5 HOH A 51 651 233 HOH HOH . J 5 HOH A 52 652 96 HOH HOH . J 5 HOH A 53 653 273 HOH HOH . J 5 HOH A 54 654 13 HOH HOH . J 5 HOH A 55 655 146 HOH HOH . J 5 HOH A 56 656 168 HOH HOH . J 5 HOH A 57 657 59 HOH HOH . J 5 HOH A 58 658 24 HOH HOH . J 5 HOH A 59 659 194 HOH HOH . J 5 HOH A 60 660 83 HOH HOH . J 5 HOH A 61 661 195 HOH HOH . J 5 HOH A 62 662 126 HOH HOH . J 5 HOH A 63 663 203 HOH HOH . J 5 HOH A 64 664 170 HOH HOH . J 5 HOH A 65 665 163 HOH HOH . J 5 HOH A 66 666 48 HOH HOH . J 5 HOH A 67 667 323 HOH HOH . J 5 HOH A 68 668 2 HOH HOH . J 5 HOH A 69 669 245 HOH HOH . J 5 HOH A 70 670 129 HOH HOH . J 5 HOH A 71 671 166 HOH HOH . J 5 HOH A 72 672 187 HOH HOH . J 5 HOH A 73 673 189 HOH HOH . J 5 HOH A 74 674 209 HOH HOH . J 5 HOH A 75 675 10 HOH HOH . J 5 HOH A 76 676 161 HOH HOH . J 5 HOH A 77 677 169 HOH HOH . J 5 HOH A 78 678 199 HOH HOH . J 5 HOH A 79 679 105 HOH HOH . J 5 HOH A 80 680 53 HOH HOH . J 5 HOH A 81 681 106 HOH HOH . J 5 HOH A 82 682 167 HOH HOH . J 5 HOH A 83 683 180 HOH HOH . J 5 HOH A 84 684 120 HOH HOH . J 5 HOH A 85 685 153 HOH HOH . J 5 HOH A 86 686 51 HOH HOH . J 5 HOH A 87 687 183 HOH HOH . J 5 HOH A 88 688 85 HOH HOH . J 5 HOH A 89 689 181 HOH HOH . J 5 HOH A 90 690 119 HOH HOH . J 5 HOH A 91 691 144 HOH HOH . J 5 HOH A 92 692 154 HOH HOH . J 5 HOH A 93 693 272 HOH HOH . J 5 HOH A 94 694 73 HOH HOH . J 5 HOH A 95 695 176 HOH HOH . J 5 HOH A 96 696 116 HOH HOH . J 5 HOH A 97 697 149 HOH HOH . J 5 HOH A 98 698 142 HOH HOH . J 5 HOH A 99 699 70 HOH HOH . J 5 HOH A 100 700 63 HOH HOH . J 5 HOH A 101 701 348 HOH HOH . J 5 HOH A 102 702 64 HOH HOH . J 5 HOH A 103 703 8 HOH HOH . J 5 HOH A 104 704 128 HOH HOH . J 5 HOH A 105 705 75 HOH HOH . J 5 HOH A 106 706 6 HOH HOH . J 5 HOH A 107 707 1 HOH HOH . J 5 HOH A 108 708 15 HOH HOH . J 5 HOH A 109 709 113 HOH HOH . J 5 HOH A 110 710 44 HOH HOH . J 5 HOH A 111 711 327 HOH HOH . J 5 HOH A 112 712 78 HOH HOH . J 5 HOH A 113 713 224 HOH HOH . J 5 HOH A 114 714 197 HOH HOH . J 5 HOH A 115 715 214 HOH HOH . J 5 HOH A 116 716 201 HOH HOH . J 5 HOH A 117 717 289 HOH HOH . J 5 HOH A 118 718 193 HOH HOH . J 5 HOH A 119 719 287 HOH HOH . J 5 HOH A 120 720 186 HOH HOH . J 5 HOH A 121 721 86 HOH HOH . J 5 HOH A 122 722 84 HOH HOH . J 5 HOH A 123 723 9 HOH HOH . J 5 HOH A 124 724 124 HOH HOH . J 5 HOH A 125 725 208 HOH HOH . J 5 HOH A 126 726 261 HOH HOH . J 5 HOH A 127 727 76 HOH HOH . J 5 HOH A 128 728 329 HOH HOH . J 5 HOH A 129 729 89 HOH HOH . J 5 HOH A 130 730 123 HOH HOH . J 5 HOH A 131 731 82 HOH HOH . J 5 HOH A 132 732 99 HOH HOH . J 5 HOH A 133 733 190 HOH HOH . J 5 HOH A 134 734 343 HOH HOH . J 5 HOH A 135 735 264 HOH HOH . J 5 HOH A 136 736 173 HOH HOH . J 5 HOH A 137 737 207 HOH HOH . J 5 HOH A 138 738 141 HOH HOH . J 5 HOH A 139 739 192 HOH HOH . J 5 HOH A 140 740 280 HOH HOH . J 5 HOH A 141 741 26 HOH HOH . J 5 HOH A 142 742 7 HOH HOH . J 5 HOH A 143 743 52 HOH HOH . J 5 HOH A 144 744 228 HOH HOH . J 5 HOH A 145 745 160 HOH HOH . J 5 HOH A 146 746 338 HOH HOH . J 5 HOH A 147 747 121 HOH HOH . J 5 HOH A 148 748 100 HOH HOH . J 5 HOH A 149 749 110 HOH HOH . J 5 HOH A 150 750 284 HOH HOH . J 5 HOH A 151 751 330 HOH HOH . J 5 HOH A 152 752 62 HOH HOH . J 5 HOH A 153 753 345 HOH HOH . J 5 HOH A 154 754 58 HOH HOH . J 5 HOH A 155 755 184 HOH HOH . J 5 HOH A 156 756 139 HOH HOH . J 5 HOH A 157 757 200 HOH HOH . J 5 HOH A 158 758 88 HOH HOH . J 5 HOH A 159 759 122 HOH HOH . J 5 HOH A 160 760 118 HOH HOH . J 5 HOH A 161 761 250 HOH HOH . J 5 HOH A 162 762 131 HOH HOH . J 5 HOH A 163 763 125 HOH HOH . J 5 HOH A 164 764 54 HOH HOH . J 5 HOH A 165 765 19 HOH HOH . J 5 HOH A 166 766 174 HOH HOH . J 5 HOH A 167 767 55 HOH HOH . J 5 HOH A 168 768 67 HOH HOH . J 5 HOH A 169 769 114 HOH HOH . J 5 HOH A 170 770 164 HOH HOH . J 5 HOH A 171 771 42 HOH HOH . J 5 HOH A 172 772 20 HOH HOH . J 5 HOH A 173 773 179 HOH HOH . J 5 HOH A 174 774 45 HOH HOH . J 5 HOH A 175 775 18 HOH HOH . J 5 HOH A 176 776 136 HOH HOH . J 5 HOH A 177 777 172 HOH HOH . J 5 HOH A 178 778 57 HOH HOH . J 5 HOH A 179 779 225 HOH HOH . J 5 HOH A 180 780 212 HOH HOH . J 5 HOH A 181 781 112 HOH HOH . J 5 HOH A 182 782 198 HOH HOH . J 5 HOH A 183 783 335 HOH HOH . J 5 HOH A 184 784 196 HOH HOH . J 5 HOH A 185 785 22 HOH HOH . J 5 HOH A 186 786 145 HOH HOH . J 5 HOH A 187 787 334 HOH HOH . J 5 HOH A 188 788 286 HOH HOH . J 5 HOH A 189 789 56 HOH HOH . J 5 HOH A 190 790 12 HOH HOH . J 5 HOH A 191 791 191 HOH HOH . J 5 HOH A 192 792 50 HOH HOH . J 5 HOH A 193 793 307 HOH HOH . J 5 HOH A 194 794 165 HOH HOH . J 5 HOH A 195 795 69 HOH HOH . J 5 HOH A 196 796 178 HOH HOH . J 5 HOH A 197 797 133 HOH HOH . J 5 HOH A 198 798 157 HOH HOH . J 5 HOH A 199 799 171 HOH HOH . J 5 HOH A 200 800 223 HOH HOH . J 5 HOH A 201 801 147 HOH HOH . J 5 HOH A 202 802 79 HOH HOH . J 5 HOH A 203 803 87 HOH HOH . J 5 HOH A 204 804 314 HOH HOH . J 5 HOH A 205 805 151 HOH HOH . J 5 HOH A 206 806 295 HOH HOH . J 5 HOH A 207 807 217 HOH HOH . J 5 HOH A 208 808 155 HOH HOH . J 5 HOH A 209 809 134 HOH HOH . J 5 HOH A 210 810 39 HOH HOH . J 5 HOH A 211 811 130 HOH HOH . J 5 HOH A 212 812 188 HOH HOH . J 5 HOH A 213 813 43 HOH HOH . J 5 HOH A 214 814 310 HOH HOH . J 5 HOH A 215 815 271 HOH HOH . J 5 HOH A 216 816 282 HOH HOH . J 5 HOH A 217 817 220 HOH HOH . J 5 HOH A 218 818 5 HOH HOH . J 5 HOH A 219 819 262 HOH HOH . J 5 HOH A 220 820 236 HOH HOH . J 5 HOH A 221 821 74 HOH HOH . J 5 HOH A 222 822 283 HOH HOH . J 5 HOH A 223 823 281 HOH HOH . J 5 HOH A 224 824 135 HOH HOH . J 5 HOH A 225 825 115 HOH HOH . J 5 HOH A 226 826 243 HOH HOH . J 5 HOH A 227 827 316 HOH HOH . J 5 HOH A 228 828 215 HOH HOH . J 5 HOH A 229 829 240 HOH HOH . J 5 HOH A 230 830 263 HOH HOH . J 5 HOH A 231 831 152 HOH HOH . J 5 HOH A 232 832 299 HOH HOH . J 5 HOH A 233 833 344 HOH HOH . J 5 HOH A 234 834 328 HOH HOH . J 5 HOH A 235 835 269 HOH HOH . J 5 HOH A 236 836 325 HOH HOH . J 5 HOH A 237 837 68 HOH HOH . J 5 HOH A 238 838 267 HOH HOH . J 5 HOH A 239 839 185 HOH HOH . J 5 HOH A 240 840 306 HOH HOH . J 5 HOH A 241 841 254 HOH HOH . J 5 HOH A 242 842 276 HOH HOH . J 5 HOH A 243 843 25 HOH HOH . J 5 HOH A 244 844 347 HOH HOH . J 5 HOH A 245 845 32 HOH HOH . J 5 HOH A 246 846 206 HOH HOH . J 5 HOH A 247 847 28 HOH HOH . J 5 HOH A 248 848 93 HOH HOH . J 5 HOH A 249 849 216 HOH HOH . J 5 HOH A 250 850 210 HOH HOH . J 5 HOH A 251 851 311 HOH HOH . J 5 HOH A 252 852 277 HOH HOH . J 5 HOH A 253 853 247 HOH HOH . J 5 HOH A 254 854 246 HOH HOH . J 5 HOH A 255 855 333 HOH HOH . J 5 HOH A 256 856 27 HOH HOH . J 5 HOH A 257 857 97 HOH HOH . J 5 HOH A 258 858 101 HOH HOH . J 5 HOH A 259 859 337 HOH HOH . J 5 HOH A 260 860 340 HOH HOH . J 5 HOH A 261 861 41 HOH HOH . J 5 HOH A 262 862 279 HOH HOH . J 5 HOH A 263 863 29 HOH HOH . J 5 HOH A 264 864 319 HOH HOH . J 5 HOH A 265 865 90 HOH HOH . J 5 HOH A 266 866 14 HOH HOH . J 5 HOH A 267 867 230 HOH HOH . J 5 HOH A 268 868 229 HOH HOH . J 5 HOH A 269 869 291 HOH HOH . J 5 HOH A 270 870 36 HOH HOH . J 5 HOH A 271 871 292 HOH HOH . J 5 HOH A 272 872 95 HOH HOH . J 5 HOH A 273 873 94 HOH HOH . J 5 HOH A 274 874 331 HOH HOH . J 5 HOH A 275 875 211 HOH HOH . J 5 HOH A 276 876 30 HOH HOH . J 5 HOH A 277 877 37 HOH HOH . J 5 HOH A 278 878 213 HOH HOH . J 5 HOH A 279 879 312 HOH HOH . J 5 HOH A 280 880 33 HOH HOH . J 5 HOH A 281 881 313 HOH HOH . J 5 HOH A 282 882 326 HOH HOH . J 5 HOH A 283 883 339 HOH HOH . J 5 HOH A 284 884 91 HOH HOH . J 5 HOH A 285 885 255 HOH HOH . J 5 HOH A 286 886 35 HOH HOH . J 5 HOH A 287 887 92 HOH HOH . J 5 HOH A 288 888 60 HOH HOH . J 5 HOH A 289 889 77 HOH HOH . J 5 HOH A 290 890 34 HOH HOH . J 5 HOH A 291 891 38 HOH HOH . J 5 HOH A 292 892 253 HOH HOH . J 5 HOH A 293 893 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . H 4 8.784 13.366 -19.075 1 61.87 ? C ACT 507 A 1 HETATM 2 O O ACT . . . H 4 8.143 13.762 -20.082 1 66.06 ? O ACT 507 A 1 HETATM 3 O OXT ACT . . . H 4 8.144 12.969 -18.065 1 54.35 ? OXT ACT 507 A 1 HETATM 4 C CH3 ACT . . . H 4 10.304 13.376 -19.079 1 64.87 ? CH3 ACT 507 A 1 HETATM 5 H H1 ACT . . . H 4 10.636 12.659 -18.507 1 77.85 ? H1 ACT 507 A 1 HETATM 6 H H2 ACT . . . H 4 10.625 14.235 -18.744 1 77.85 ? H2 ACT 507 A 1 HETATM 7 H H3 ACT . . . H 4 10.628 13.242 -19.99 1 77.85 ? H3 ACT 507 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #