data_5DC9 # _model_server_result.job_id yuEeHKei0mk7SMZG5G3DzA _model_server_result.datetime_utc '2024-12-23 23:50:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5DC9 # _exptl.entry_id 5DC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DC9 _cell.length_a 66.391 _cell.length_b 66.391 _cell.length_c 112.797 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H C1 GOL . B GOL 103 1_555 I O1 GOL . B GOL 104 7_645 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale2 H C2 GOL . B GOL 103 1_555 I O2 GOL . B GOL 104 7_645 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale3 H C2 GOL . B GOL 103 1_555 I C2 GOL . B GOL 104 7_645 ? ? ? ? ? ? ? ? ? ? ? ? 1.087 ? covale ? covale4 H C3 GOL . B GOL 103 1_555 I C3 GOL . B GOL 104 7_645 ? ? ? ? ? ? ? ? ? ? ? ? 1.113 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5DC9 _atom_sites.fract_transf_matrix[1][1] 0.015062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 4 IMD A 1 302 1 IMD IMD . E 4 IMD A 1 303 1 IMD IMD . F 3 GOL B 1 101 1 GOL GOL . G 3 GOL B 1 102 1 GOL GOL . H 3 GOL B 1 103 1 GOL GOL . I 3 GOL B 1 104 1 GOL GOL . J 5 HOH A 1 401 180 HOH HOH . J 5 HOH A 2 402 39 HOH HOH . J 5 HOH A 3 403 27 HOH HOH . J 5 HOH A 4 404 47 HOH HOH . J 5 HOH A 5 405 86 HOH HOH . J 5 HOH A 6 406 113 HOH HOH . J 5 HOH A 7 407 29 HOH HOH . J 5 HOH A 8 408 4 HOH HOH . J 5 HOH A 9 409 190 HOH HOH . J 5 HOH A 10 410 171 HOH HOH . J 5 HOH A 11 411 41 HOH HOH . J 5 HOH A 12 412 76 HOH HOH . J 5 HOH A 13 413 60 HOH HOH . J 5 HOH A 14 414 157 HOH HOH . J 5 HOH A 15 415 165 HOH HOH . J 5 HOH A 16 416 112 HOH HOH . J 5 HOH A 17 417 19 HOH HOH . J 5 HOH A 18 418 170 HOH HOH . J 5 HOH A 19 419 181 HOH HOH . J 5 HOH A 20 420 12 HOH HOH . J 5 HOH A 21 421 68 HOH HOH . J 5 HOH A 22 422 85 HOH HOH . J 5 HOH A 23 423 120 HOH HOH . J 5 HOH A 24 424 6 HOH HOH . J 5 HOH A 25 425 116 HOH HOH . J 5 HOH A 26 426 7 HOH HOH . J 5 HOH A 27 427 10 HOH HOH . J 5 HOH A 28 428 47 HOH HOH . J 5 HOH A 29 429 52 HOH HOH . J 5 HOH A 30 430 8 HOH HOH . J 5 HOH A 31 431 130 HOH HOH . J 5 HOH A 32 432 9 HOH HOH . J 5 HOH A 33 433 22 HOH HOH . J 5 HOH A 34 434 24 HOH HOH . J 5 HOH A 35 435 75 HOH HOH . J 5 HOH A 36 436 23 HOH HOH . J 5 HOH A 37 437 104 HOH HOH . J 5 HOH A 38 438 35 HOH HOH . J 5 HOH A 39 439 18 HOH HOH . J 5 HOH A 40 440 88 HOH HOH . J 5 HOH A 41 441 31 HOH HOH . J 5 HOH A 42 442 89 HOH HOH . J 5 HOH A 43 443 17 HOH HOH . J 5 HOH A 44 444 99 HOH HOH . J 5 HOH A 45 445 158 HOH HOH . J 5 HOH A 46 446 6 HOH HOH . J 5 HOH A 47 447 155 HOH HOH . J 5 HOH A 48 448 161 HOH HOH . J 5 HOH A 49 449 82 HOH HOH . J 5 HOH A 50 450 78 HOH HOH . J 5 HOH A 51 451 26 HOH HOH . J 5 HOH A 52 452 5 HOH HOH . J 5 HOH A 53 453 20 HOH HOH . J 5 HOH A 54 454 168 HOH HOH . J 5 HOH A 55 455 16 HOH HOH . J 5 HOH A 56 456 11 HOH HOH . J 5 HOH A 57 457 93 HOH HOH . J 5 HOH A 58 458 126 HOH HOH . J 5 HOH A 59 459 37 HOH HOH . J 5 HOH A 60 460 103 HOH HOH . J 5 HOH A 61 461 61 HOH HOH . J 5 HOH A 62 462 49 HOH HOH . J 5 HOH A 63 463 42 HOH HOH . J 5 HOH A 64 464 176 HOH HOH . J 5 HOH A 65 465 37 HOH HOH . J 5 HOH A 66 466 136 HOH HOH . J 5 HOH A 67 467 117 HOH HOH . J 5 HOH A 68 468 14 HOH HOH . J 5 HOH A 69 469 114 HOH HOH . J 5 HOH A 70 470 98 HOH HOH . J 5 HOH A 71 471 94 HOH HOH . J 5 HOH A 72 472 141 HOH HOH . J 5 HOH A 73 473 15 HOH HOH . J 5 HOH A 74 474 13 HOH HOH . J 5 HOH A 75 475 53 HOH HOH . J 5 HOH A 76 476 164 HOH HOH . J 5 HOH A 77 477 1 HOH HOH . J 5 HOH A 78 478 30 HOH HOH . J 5 HOH A 79 479 45 HOH HOH . J 5 HOH A 80 480 55 HOH HOH . J 5 HOH A 81 481 163 HOH HOH . J 5 HOH A 82 482 115 HOH HOH . J 5 HOH A 83 483 119 HOH HOH . J 5 HOH A 84 484 118 HOH HOH . J 5 HOH A 85 485 80 HOH HOH . J 5 HOH A 86 486 142 HOH HOH . J 5 HOH A 87 487 57 HOH HOH . J 5 HOH A 88 488 145 HOH HOH . J 5 HOH A 89 489 87 HOH HOH . J 5 HOH A 90 490 72 HOH HOH . J 5 HOH A 91 491 139 HOH HOH . J 5 HOH A 92 492 92 HOH HOH . J 5 HOH A 93 493 58 HOH HOH . J 5 HOH A 94 494 128 HOH HOH . J 5 HOH A 95 495 148 HOH HOH . J 5 HOH A 96 496 147 HOH HOH . J 5 HOH A 97 497 124 HOH HOH . J 5 HOH A 98 498 140 HOH HOH . K 5 HOH B 1 201 150 HOH HOH . K 5 HOH B 2 202 81 HOH HOH . K 5 HOH B 3 203 149 HOH HOH . K 5 HOH B 4 204 133 HOH HOH . K 5 HOH B 5 205 156 HOH HOH . K 5 HOH B 6 206 35 HOH HOH . K 5 HOH B 7 207 127 HOH HOH . K 5 HOH B 8 208 34 HOH HOH . K 5 HOH B 9 209 186 HOH HOH . K 5 HOH B 10 210 105 HOH HOH . K 5 HOH B 11 211 7 HOH HOH . K 5 HOH B 12 212 153 HOH HOH . K 5 HOH B 13 213 19 HOH HOH . K 5 HOH B 14 214 173 HOH HOH . K 5 HOH B 15 215 182 HOH HOH . K 5 HOH B 16 216 139 HOH HOH . K 5 HOH B 17 217 162 HOH HOH . K 5 HOH B 18 218 174 HOH HOH . K 5 HOH B 19 219 122 HOH HOH . K 5 HOH B 20 220 46 HOH HOH . K 5 HOH B 21 221 65 HOH HOH . K 5 HOH B 22 222 111 HOH HOH . K 5 HOH B 23 223 183 HOH HOH . K 5 HOH B 24 224 34 HOH HOH . K 5 HOH B 25 225 77 HOH HOH . K 5 HOH B 26 226 132 HOH HOH . K 5 HOH B 27 227 95 HOH HOH . K 5 HOH B 28 228 59 HOH HOH . K 5 HOH B 29 229 27 HOH HOH . K 5 HOH B 30 230 84 HOH HOH . K 5 HOH B 31 231 110 HOH HOH . K 5 HOH B 32 232 67 HOH HOH . K 5 HOH B 33 233 9 HOH HOH . K 5 HOH B 34 234 106 HOH HOH . K 5 HOH B 35 235 179 HOH HOH . K 5 HOH B 36 236 166 HOH HOH . K 5 HOH B 37 237 70 HOH HOH . K 5 HOH B 38 238 15 HOH HOH . K 5 HOH B 39 239 14 HOH HOH . K 5 HOH B 40 240 146 HOH HOH . K 5 HOH B 41 241 13 HOH HOH . K 5 HOH B 42 242 8 HOH HOH . K 5 HOH B 43 243 59 HOH HOH . K 5 HOH B 44 244 159 HOH HOH . K 5 HOH B 45 245 154 HOH HOH . K 5 HOH B 46 246 46 HOH HOH . K 5 HOH B 47 247 3 HOH HOH . K 5 HOH B 48 248 151 HOH HOH . K 5 HOH B 49 249 125 HOH HOH . K 5 HOH B 50 250 143 HOH HOH . K 5 HOH B 51 251 21 HOH HOH . K 5 HOH B 52 252 5 HOH HOH . K 5 HOH B 53 253 134 HOH HOH . K 5 HOH B 54 254 43 HOH HOH . K 5 HOH B 55 255 96 HOH HOH . K 5 HOH B 56 256 97 HOH HOH . K 5 HOH B 57 257 11 HOH HOH . K 5 HOH B 58 258 83 HOH HOH . K 5 HOH B 59 259 36 HOH HOH . K 5 HOH B 60 260 167 HOH HOH . K 5 HOH B 61 261 16 HOH HOH . K 5 HOH B 62 262 38 HOH HOH . K 5 HOH B 63 263 25 HOH HOH . K 5 HOH B 64 264 83 HOH HOH . K 5 HOH B 65 265 74 HOH HOH . K 5 HOH B 66 266 144 HOH HOH . K 5 HOH B 67 267 191 HOH HOH . K 5 HOH B 68 268 107 HOH HOH . K 5 HOH B 69 269 177 HOH HOH . K 5 HOH B 70 270 63 HOH HOH . K 5 HOH B 71 271 172 HOH HOH . K 5 HOH B 72 272 54 HOH HOH . K 5 HOH B 73 273 140 HOH HOH . K 5 HOH B 74 274 62 HOH HOH . K 5 HOH B 75 275 137 HOH HOH . K 5 HOH B 76 276 1 HOH HOH . K 5 HOH B 77 277 66 HOH HOH . K 5 HOH B 78 278 160 HOH HOH . K 5 HOH B 79 279 73 HOH HOH . K 5 HOH B 80 280 184 HOH HOH . K 5 HOH B 81 281 30 HOH HOH . K 5 HOH B 82 282 2 HOH HOH . K 5 HOH B 83 283 135 HOH HOH . K 5 HOH B 84 284 44 HOH HOH . K 5 HOH B 85 285 185 HOH HOH . K 5 HOH B 86 286 17 HOH HOH . K 5 HOH B 87 287 12 HOH HOH . K 5 HOH B 88 288 189 HOH HOH . K 5 HOH B 89 289 57 HOH HOH . K 5 HOH B 90 290 40 HOH HOH . K 5 HOH B 91 291 2 HOH HOH . K 5 HOH B 92 292 24 HOH HOH . K 5 HOH B 93 293 40 HOH HOH . K 5 HOH B 94 294 10 HOH HOH . K 5 HOH B 95 295 71 HOH HOH . K 5 HOH B 96 296 64 HOH HOH . K 5 HOH B 97 297 51 HOH HOH . K 5 HOH B 98 298 188 HOH HOH . K 5 HOH B 99 299 79 HOH HOH . K 5 HOH B 100 300 33 HOH HOH . K 5 HOH B 101 301 109 HOH HOH . K 5 HOH B 102 302 48 HOH HOH . K 5 HOH B 103 303 90 HOH HOH . K 5 HOH B 104 304 178 HOH HOH . K 5 HOH B 105 305 56 HOH HOH . K 5 HOH B 106 306 187 HOH HOH . K 5 HOH B 107 307 50 HOH HOH . K 5 HOH B 108 308 129 HOH HOH . K 5 HOH B 109 309 100 HOH HOH . K 5 HOH B 110 310 42 HOH HOH . K 5 HOH B 111 311 131 HOH HOH . K 5 HOH B 112 312 108 HOH HOH . K 5 HOH B 113 313 69 HOH HOH . K 5 HOH B 114 314 39 HOH HOH . K 5 HOH B 115 315 121 HOH HOH . K 5 HOH B 116 316 152 HOH HOH . K 5 HOH B 117 317 194 HOH HOH . K 5 HOH B 118 318 138 HOH HOH . K 5 HOH B 119 319 192 HOH HOH . K 5 HOH B 120 320 101 HOH HOH . K 5 HOH B 121 321 121 HOH HOH . K 5 HOH B 122 322 138 HOH HOH . K 5 HOH B 123 323 41 HOH HOH . K 5 HOH B 124 324 146 HOH HOH . K 5 HOH B 125 325 102 HOH HOH . K 5 HOH B 126 326 32 HOH HOH . K 5 HOH B 127 327 91 HOH HOH . K 5 HOH B 128 328 169 HOH HOH . K 5 HOH B 129 329 141 HOH HOH . K 5 HOH B 130 330 123 HOH HOH . K 5 HOH B 131 331 195 HOH HOH . K 5 HOH B 132 332 28 HOH HOH . K 5 HOH B 133 333 193 HOH HOH . K 5 HOH B 134 334 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -2.691 -39.921 -15.794 1 27.34 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 -2.932 -41.313 -15.634 1 22.12 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 -3.513 -39.355 -16.944 1 23.97 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 -4.881 -39.154 -16.548 1 29.31 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 -3.489 -40.267 -18.163 1 27.59 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 -2.243 -40.102 -18.8 1 23.32 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #