data_5DCE # _model_server_result.job_id gNNZDph7BBZNbkGdgIO7Mg _model_server_result.datetime_utc '2025-07-01 15:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5DCE # _exptl.entry_id 5DCE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.58 _cell.angle_gamma 90 _cell.entry_id 5DCE _cell.length_a 73.432 _cell.length_b 138.042 _cell.length_c 75.868 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 63 A CYS 63 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 A NE2 HIS 270 A HIS 270 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 A OE2 GLU 304 A GLU 304 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 A OD2 ASP 324 A ASP 324 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc5 E MN MN . A MN 401 1_555 M O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 B SG CYS 63 B CYS 63 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc7 B NE2 HIS 270 B HIS 270 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc8 B OE2 GLU 304 B GLU 304 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? metalc ? metalc9 B OD2 ASP 324 B ASP 324 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc10 C SG CYS 63 C CYS 63 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc11 C NE2 HIS 270 C HIS 270 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc12 C OE2 GLU 304 C GLU 304 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc13 C OD2 ASP 324 C ASP 324 1_555 I MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc14 I MN MN . C MN 401 1_555 O O HOH . C HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc15 D SG CYS 63 D CYS 63 1_555 K MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc16 D NE2 HIS 270 D HIS 270 1_555 K MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc17 D OE2 GLU 304 D GLU 304 1_555 K MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc18 D OD2 ASP 324 D ASP 324 1_555 K MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DCE _atom_sites.fract_transf_matrix[1][1] 0.013618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001572 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013268 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 401 1 MN MN . F 3 TRP A 1 402 3 TRP TRP . G 2 MN B 1 401 4 MN MN . H 3 TRP B 1 402 4 TRP TRP . I 2 MN C 1 401 2 MN MN . J 3 TRP C 1 402 2 TRP TRP . K 2 MN D 1 401 3 MN MN . L 3 TRP D 1 402 5 TRP TRP . M 4 HOH A 1 501 174 HOH HOH . M 4 HOH A 2 502 89 HOH HOH . M 4 HOH A 3 503 60 HOH HOH . M 4 HOH A 4 504 221 HOH HOH . M 4 HOH A 5 505 66 HOH HOH . M 4 HOH A 6 506 136 HOH HOH . M 4 HOH A 7 507 203 HOH HOH . M 4 HOH A 8 508 15 HOH HOH . M 4 HOH A 9 509 128 HOH HOH . M 4 HOH A 10 510 5 HOH HOH . M 4 HOH A 11 511 73 HOH HOH . M 4 HOH A 12 512 4 HOH HOH . M 4 HOH A 13 513 158 HOH HOH . M 4 HOH A 14 514 45 HOH HOH . M 4 HOH A 15 515 93 HOH HOH . M 4 HOH A 16 516 145 HOH HOH . M 4 HOH A 17 517 10 HOH HOH . M 4 HOH A 18 518 101 HOH HOH . M 4 HOH A 19 519 232 HOH HOH . M 4 HOH A 20 520 94 HOH HOH . M 4 HOH A 21 521 170 HOH HOH . M 4 HOH A 22 522 193 HOH HOH . M 4 HOH A 23 523 105 HOH HOH . M 4 HOH A 24 524 212 HOH HOH . M 4 HOH A 25 525 59 HOH HOH . M 4 HOH A 26 526 147 HOH HOH . M 4 HOH A 27 527 44 HOH HOH . M 4 HOH A 28 528 18 HOH HOH . M 4 HOH A 29 529 19 HOH HOH . M 4 HOH A 30 530 204 HOH HOH . M 4 HOH A 31 531 115 HOH HOH . M 4 HOH A 32 532 72 HOH HOH . M 4 HOH A 33 533 88 HOH HOH . M 4 HOH A 34 534 26 HOH HOH . M 4 HOH A 35 535 112 HOH HOH . M 4 HOH A 36 536 65 HOH HOH . M 4 HOH A 37 537 62 HOH HOH . M 4 HOH A 38 538 126 HOH HOH . M 4 HOH A 39 539 64 HOH HOH . M 4 HOH A 40 540 153 HOH HOH . M 4 HOH A 41 541 184 HOH HOH . M 4 HOH A 42 542 61 HOH HOH . M 4 HOH A 43 543 103 HOH HOH . M 4 HOH A 44 544 188 HOH HOH . M 4 HOH A 45 545 196 HOH HOH . M 4 HOH A 46 546 48 HOH HOH . M 4 HOH A 47 547 13 HOH HOH . M 4 HOH A 48 548 97 HOH HOH . M 4 HOH A 49 549 113 HOH HOH . M 4 HOH A 50 550 35 HOH HOH . M 4 HOH A 51 551 164 HOH HOH . M 4 HOH A 52 552 110 HOH HOH . M 4 HOH A 53 553 68 HOH HOH . M 4 HOH A 54 554 30 HOH HOH . M 4 HOH A 55 555 70 HOH HOH . M 4 HOH A 56 556 116 HOH HOH . M 4 HOH A 57 557 180 HOH HOH . M 4 HOH A 58 558 80 HOH HOH . M 4 HOH A 59 559 233 HOH HOH . M 4 HOH A 60 560 217 HOH HOH . M 4 HOH A 61 561 229 HOH HOH . M 4 HOH A 62 562 218 HOH HOH . M 4 HOH A 63 563 230 HOH HOH . N 4 HOH B 1 501 57 HOH HOH . N 4 HOH B 2 502 149 HOH HOH . N 4 HOH B 3 503 85 HOH HOH . N 4 HOH B 4 504 155 HOH HOH . N 4 HOH B 5 505 3 HOH HOH . N 4 HOH B 6 506 17 HOH HOH . N 4 HOH B 7 507 51 HOH HOH . N 4 HOH B 8 508 168 HOH HOH . N 4 HOH B 9 509 141 HOH HOH . N 4 HOH B 10 510 8 HOH HOH . N 4 HOH B 11 511 33 HOH HOH . N 4 HOH B 12 512 1 HOH HOH . N 4 HOH B 13 513 192 HOH HOH . N 4 HOH B 14 514 226 HOH HOH . N 4 HOH B 15 515 211 HOH HOH . N 4 HOH B 16 516 79 HOH HOH . N 4 HOH B 17 517 86 HOH HOH . N 4 HOH B 18 518 172 HOH HOH . N 4 HOH B 19 519 169 HOH HOH . N 4 HOH B 20 520 22 HOH HOH . N 4 HOH B 21 521 135 HOH HOH . N 4 HOH B 22 522 173 HOH HOH . N 4 HOH B 23 523 140 HOH HOH . N 4 HOH B 24 524 52 HOH HOH . N 4 HOH B 25 525 75 HOH HOH . N 4 HOH B 26 526 90 HOH HOH . N 4 HOH B 27 527 121 HOH HOH . N 4 HOH B 28 528 137 HOH HOH . N 4 HOH B 29 529 71 HOH HOH . N 4 HOH B 30 530 148 HOH HOH . N 4 HOH B 31 531 142 HOH HOH . N 4 HOH B 32 532 111 HOH HOH . N 4 HOH B 33 533 124 HOH HOH . N 4 HOH B 34 534 96 HOH HOH . N 4 HOH B 35 535 162 HOH HOH . N 4 HOH B 36 536 186 HOH HOH . N 4 HOH B 37 537 34 HOH HOH . N 4 HOH B 38 538 205 HOH HOH . N 4 HOH B 39 539 200 HOH HOH . N 4 HOH B 40 540 12 HOH HOH . N 4 HOH B 41 541 123 HOH HOH . N 4 HOH B 42 542 130 HOH HOH . N 4 HOH B 43 543 210 HOH HOH . N 4 HOH B 44 544 16 HOH HOH . N 4 HOH B 45 545 195 HOH HOH . N 4 HOH B 46 546 77 HOH HOH . N 4 HOH B 47 547 219 HOH HOH . O 4 HOH C 1 501 102 HOH HOH . O 4 HOH C 2 502 100 HOH HOH . O 4 HOH C 3 503 216 HOH HOH . O 4 HOH C 4 504 78 HOH HOH . O 4 HOH C 5 505 167 HOH HOH . O 4 HOH C 6 506 163 HOH HOH . O 4 HOH C 7 507 154 HOH HOH . O 4 HOH C 8 508 214 HOH HOH . O 4 HOH C 9 509 23 HOH HOH . O 4 HOH C 10 510 11 HOH HOH . O 4 HOH C 11 511 224 HOH HOH . O 4 HOH C 12 512 194 HOH HOH . O 4 HOH C 13 513 117 HOH HOH . O 4 HOH C 14 514 176 HOH HOH . O 4 HOH C 15 515 209 HOH HOH . O 4 HOH C 16 516 139 HOH HOH . O 4 HOH C 17 517 220 HOH HOH . O 4 HOH C 18 518 98 HOH HOH . O 4 HOH C 19 519 132 HOH HOH . O 4 HOH C 20 520 144 HOH HOH . O 4 HOH C 21 521 24 HOH HOH . O 4 HOH C 22 522 95 HOH HOH . O 4 HOH C 23 523 37 HOH HOH . O 4 HOH C 24 524 83 HOH HOH . O 4 HOH C 25 525 63 HOH HOH . O 4 HOH C 26 526 150 HOH HOH . O 4 HOH C 27 527 49 HOH HOH . O 4 HOH C 28 528 197 HOH HOH . O 4 HOH C 29 529 36 HOH HOH . O 4 HOH C 30 530 38 HOH HOH . O 4 HOH C 31 531 156 HOH HOH . O 4 HOH C 32 532 160 HOH HOH . O 4 HOH C 33 533 175 HOH HOH . O 4 HOH C 34 534 107 HOH HOH . O 4 HOH C 35 535 227 HOH HOH . O 4 HOH C 36 536 138 HOH HOH . O 4 HOH C 37 537 185 HOH HOH . O 4 HOH C 38 538 125 HOH HOH . O 4 HOH C 39 539 208 HOH HOH . O 4 HOH C 40 540 222 HOH HOH . O 4 HOH C 41 541 207 HOH HOH . O 4 HOH C 42 542 31 HOH HOH . O 4 HOH C 43 543 55 HOH HOH . O 4 HOH C 44 544 161 HOH HOH . O 4 HOH C 45 545 182 HOH HOH . O 4 HOH C 46 546 198 HOH HOH . O 4 HOH C 47 547 91 HOH HOH . O 4 HOH C 48 548 32 HOH HOH . O 4 HOH C 49 549 181 HOH HOH . O 4 HOH C 50 550 201 HOH HOH . O 4 HOH C 51 551 53 HOH HOH . O 4 HOH C 52 552 106 HOH HOH . O 4 HOH C 53 553 46 HOH HOH . O 4 HOH C 54 554 165 HOH HOH . O 4 HOH C 55 555 129 HOH HOH . O 4 HOH C 56 556 223 HOH HOH . O 4 HOH C 57 557 231 HOH HOH . O 4 HOH C 58 558 171 HOH HOH . P 4 HOH D 1 501 74 HOH HOH . P 4 HOH D 2 502 228 HOH HOH . P 4 HOH D 3 503 213 HOH HOH . P 4 HOH D 4 504 159 HOH HOH . P 4 HOH D 5 505 134 HOH HOH . P 4 HOH D 6 506 50 HOH HOH . P 4 HOH D 7 507 92 HOH HOH . P 4 HOH D 8 508 133 HOH HOH . P 4 HOH D 9 509 2 HOH HOH . P 4 HOH D 10 510 6 HOH HOH . P 4 HOH D 11 511 67 HOH HOH . P 4 HOH D 12 512 190 HOH HOH . P 4 HOH D 13 513 81 HOH HOH . P 4 HOH D 14 514 131 HOH HOH . P 4 HOH D 15 515 84 HOH HOH . P 4 HOH D 16 516 215 HOH HOH . P 4 HOH D 17 517 152 HOH HOH . P 4 HOH D 18 518 56 HOH HOH . P 4 HOH D 19 519 108 HOH HOH . P 4 HOH D 20 520 9 HOH HOH . P 4 HOH D 21 521 27 HOH HOH . P 4 HOH D 22 522 189 HOH HOH . P 4 HOH D 23 523 82 HOH HOH . P 4 HOH D 24 524 109 HOH HOH . P 4 HOH D 25 525 157 HOH HOH . P 4 HOH D 26 526 202 HOH HOH . P 4 HOH D 27 527 47 HOH HOH . P 4 HOH D 28 528 99 HOH HOH . P 4 HOH D 29 529 183 HOH HOH . P 4 HOH D 30 530 40 HOH HOH . P 4 HOH D 31 531 58 HOH HOH . P 4 HOH D 32 532 14 HOH HOH . P 4 HOH D 33 533 41 HOH HOH . P 4 HOH D 34 534 199 HOH HOH . P 4 HOH D 35 535 151 HOH HOH . P 4 HOH D 36 536 179 HOH HOH . P 4 HOH D 37 537 143 HOH HOH . P 4 HOH D 38 538 76 HOH HOH . P 4 HOH D 39 539 166 HOH HOH . P 4 HOH D 40 540 104 HOH HOH . P 4 HOH D 41 541 206 HOH HOH . P 4 HOH D 42 542 187 HOH HOH . P 4 HOH D 43 543 122 HOH HOH . P 4 HOH D 44 544 191 HOH HOH . P 4 HOH D 45 545 178 HOH HOH . P 4 HOH D 46 546 39 HOH HOH . P 4 HOH D 47 547 118 HOH HOH . P 4 HOH D 48 548 225 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.492 _atom_site.Cartn_y -13.621 _atom_site.Cartn_z -34.117 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #