data_5DCH # _model_server_result.job_id Oh3y1I8Czms8SPFjQUrHgg _model_server_result.datetime_utc '2025-09-30 02:02:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5DCH # _exptl.entry_id 5DCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.294 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(2-methylbenzyl)sulfanyl]-4H-1,2,4-triazol-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.31 _cell.angle_gamma 90 _cell.entry_id 5DCH _cell.length_a 35.47 _cell.length_b 63.1 _cell.length_c 41.87 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 37 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 37 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 40 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 40 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 N4 S' _chem_comp.formula_weight 220.294 _chem_comp.id 1YO _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(2-methylbenzyl)sulfanyl]-4H-1,2,4-triazol-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAB NAO 1YO sing 1 n n NAO CAG 1YO sing 2 n y NAO CAN 1YO sing 3 n y SAK CAN 1YO sing 4 n n SAK CAH 1YO sing 5 n n CAG NAI 1YO doub 6 n y CAA CAL 1YO sing 7 n n CAN NAJ 1YO doub 8 n y CAL CAE 1YO doub 9 n y CAL CAM 1YO sing 10 n y CAE CAC 1YO sing 11 n y CAM CAH 1YO sing 12 n n CAM CAF 1YO doub 13 n y CAC CAD 1YO doub 14 n y NAI NAJ 1YO sing 15 n y CAF CAD 1YO sing 16 n y CAA HAC 1YO sing 17 n n CAA HAA 1YO sing 18 n n CAA HAB 1YO sing 19 n n CAC HAD 1YO sing 20 n n CAD HAE 1YO sing 21 n n CAE HAF 1YO sing 22 n n CAF HAG 1YO sing 23 n n CAG HAH 1YO sing 24 n n CAH HAI 1YO sing 25 n n CAH HAJ 1YO sing 26 n n NAB HAL 1YO sing 27 n n NAB HAK 1YO sing 28 n n # _atom_sites.entry_id 5DCH _atom_sites.fract_transf_matrix[1][1] 0.028193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004118 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1YO A 1 201 201 1YO 1YO . C 3 GOL A 1 202 301 GOL GOL . D 3 GOL A 1 203 302 GOL GOL . E 3 GOL A 1 204 303 GOL GOL . F 3 GOL A 1 205 304 GOL GOL . G 4 MES A 1 206 401 MES MES . H 5 HOH A 1 301 634 HOH HOH . H 5 HOH A 2 302 612 HOH HOH . H 5 HOH A 3 303 610 HOH HOH . H 5 HOH A 4 304 519 HOH HOH . H 5 HOH A 5 305 591 HOH HOH . H 5 HOH A 6 306 617 HOH HOH . H 5 HOH A 7 307 641 HOH HOH . H 5 HOH A 8 308 581 HOH HOH . H 5 HOH A 9 309 601 HOH HOH . H 5 HOH A 10 310 579 HOH HOH . H 5 HOH A 11 311 556 HOH HOH . H 5 HOH A 12 312 511 HOH HOH . H 5 HOH A 13 313 543 HOH HOH . H 5 HOH A 14 314 625 HOH HOH . H 5 HOH A 15 315 535 HOH HOH . H 5 HOH A 16 316 595 HOH HOH . H 5 HOH A 17 317 538 HOH HOH . H 5 HOH A 18 318 606 HOH HOH . H 5 HOH A 19 319 569 HOH HOH . H 5 HOH A 20 320 565 HOH HOH . H 5 HOH A 21 321 502 HOH HOH . H 5 HOH A 22 322 590 HOH HOH . H 5 HOH A 23 323 613 HOH HOH . H 5 HOH A 24 324 623 HOH HOH . H 5 HOH A 25 325 546 HOH HOH . H 5 HOH A 26 326 578 HOH HOH . H 5 HOH A 27 327 597 HOH HOH . H 5 HOH A 28 328 544 HOH HOH . H 5 HOH A 29 329 521 HOH HOH . H 5 HOH A 30 330 635 HOH HOH . H 5 HOH A 31 331 563 HOH HOH . H 5 HOH A 32 332 525 HOH HOH . H 5 HOH A 33 333 528 HOH HOH . H 5 HOH A 34 334 545 HOH HOH . H 5 HOH A 35 335 557 HOH HOH . H 5 HOH A 36 336 520 HOH HOH . H 5 HOH A 37 337 537 HOH HOH . H 5 HOH A 38 338 532 HOH HOH . H 5 HOH A 39 339 506 HOH HOH . H 5 HOH A 40 340 576 HOH HOH . H 5 HOH A 41 341 507 HOH HOH . H 5 HOH A 42 342 584 HOH HOH . H 5 HOH A 43 343 555 HOH HOH . H 5 HOH A 44 344 594 HOH HOH . H 5 HOH A 45 345 549 HOH HOH . H 5 HOH A 46 346 524 HOH HOH . H 5 HOH A 47 347 592 HOH HOH . H 5 HOH A 48 348 534 HOH HOH . H 5 HOH A 49 349 587 HOH HOH . H 5 HOH A 50 350 501 HOH HOH . H 5 HOH A 51 351 517 HOH HOH . H 5 HOH A 52 352 570 HOH HOH . H 5 HOH A 53 353 609 HOH HOH . H 5 HOH A 54 354 516 HOH HOH . H 5 HOH A 55 355 582 HOH HOH . H 5 HOH A 56 356 515 HOH HOH . H 5 HOH A 57 357 571 HOH HOH . H 5 HOH A 58 358 547 HOH HOH . H 5 HOH A 59 359 512 HOH HOH . H 5 HOH A 60 360 550 HOH HOH . H 5 HOH A 61 361 551 HOH HOH . H 5 HOH A 62 362 630 HOH HOH . H 5 HOH A 63 363 527 HOH HOH . H 5 HOH A 64 364 503 HOH HOH . H 5 HOH A 65 365 505 HOH HOH . H 5 HOH A 66 366 523 HOH HOH . H 5 HOH A 67 367 552 HOH HOH . H 5 HOH A 68 368 586 HOH HOH . H 5 HOH A 69 369 615 HOH HOH . H 5 HOH A 70 370 508 HOH HOH . H 5 HOH A 71 371 589 HOH HOH . H 5 HOH A 72 372 580 HOH HOH . H 5 HOH A 73 373 633 HOH HOH . H 5 HOH A 74 374 605 HOH HOH . H 5 HOH A 75 375 564 HOH HOH . H 5 HOH A 76 376 522 HOH HOH . H 5 HOH A 77 377 631 HOH HOH . H 5 HOH A 78 378 530 HOH HOH . H 5 HOH A 79 379 632 HOH HOH . H 5 HOH A 80 380 598 HOH HOH . H 5 HOH A 81 381 539 HOH HOH . H 5 HOH A 82 382 583 HOH HOH . H 5 HOH A 83 383 626 HOH HOH . H 5 HOH A 84 384 616 HOH HOH . H 5 HOH A 85 385 640 HOH HOH . H 5 HOH A 86 386 636 HOH HOH . H 5 HOH A 87 387 567 HOH HOH . H 5 HOH A 88 388 559 HOH HOH . H 5 HOH A 89 389 618 HOH HOH . H 5 HOH A 90 390 533 HOH HOH . H 5 HOH A 91 391 604 HOH HOH . H 5 HOH A 92 392 518 HOH HOH . H 5 HOH A 93 393 599 HOH HOH . H 5 HOH A 94 394 510 HOH HOH . H 5 HOH A 95 395 541 HOH HOH . H 5 HOH A 96 396 542 HOH HOH . H 5 HOH A 97 397 529 HOH HOH . H 5 HOH A 98 398 608 HOH HOH . H 5 HOH A 99 399 548 HOH HOH . H 5 HOH A 100 400 526 HOH HOH . H 5 HOH A 101 401 596 HOH HOH . H 5 HOH A 102 402 540 HOH HOH . H 5 HOH A 103 403 574 HOH HOH . H 5 HOH A 104 404 514 HOH HOH . H 5 HOH A 105 405 572 HOH HOH . H 5 HOH A 106 406 607 HOH HOH . H 5 HOH A 107 407 561 HOH HOH . H 5 HOH A 108 408 504 HOH HOH . H 5 HOH A 109 409 573 HOH HOH . H 5 HOH A 110 410 575 HOH HOH . H 5 HOH A 111 411 611 HOH HOH . H 5 HOH A 112 412 628 HOH HOH . H 5 HOH A 113 413 509 HOH HOH . H 5 HOH A 114 414 593 HOH HOH . H 5 HOH A 115 415 513 HOH HOH . H 5 HOH A 116 416 531 HOH HOH . H 5 HOH A 117 417 614 HOH HOH . H 5 HOH A 118 418 600 HOH HOH . H 5 HOH A 119 419 639 HOH HOH . H 5 HOH A 120 420 554 HOH HOH . H 5 HOH A 121 421 624 HOH HOH . H 5 HOH A 122 422 638 HOH HOH . H 5 HOH A 123 423 602 HOH HOH . H 5 HOH A 124 424 553 HOH HOH . H 5 HOH A 125 425 627 HOH HOH . H 5 HOH A 126 426 585 HOH HOH . H 5 HOH A 127 427 621 HOH HOH . H 5 HOH A 128 428 629 HOH HOH . H 5 HOH A 129 429 536 HOH HOH . H 5 HOH A 130 430 622 HOH HOH . H 5 HOH A 131 431 637 HOH HOH . H 5 HOH A 132 432 619 HOH HOH . H 5 HOH A 133 433 558 HOH HOH . H 5 HOH A 134 434 562 HOH HOH . H 5 HOH A 135 435 603 HOH HOH . H 5 HOH A 136 436 620 HOH HOH . H 5 HOH A 137 437 566 HOH HOH . H 5 HOH A 138 438 560 HOH HOH . H 5 HOH A 139 439 568 HOH HOH . H 5 HOH A 140 440 588 HOH HOH . H 5 HOH A 141 441 577 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 1YO . . . B 2 21.949 37.563 -2.208 1 43.4 ? CAA 1YO 201 A 1 HETATM 2 C CAC 1YO . . . B 2 25.049 36.929 -4.244 1 40.88 ? CAC 1YO 201 A 1 HETATM 3 C CAD 1YO . . . B 2 24.705 35.76 -4.905 1 40.78 ? CAD 1YO 201 A 1 HETATM 4 C CAE 1YO . . . B 2 24.159 37.52 -3.365 1 40.71 ? CAE 1YO 201 A 1 HETATM 5 C CAF 1YO . . . B 2 23.466 35.179 -4.693 1 39.52 ? CAF 1YO 201 A 1 HETATM 6 C CAG 1YO . . . B 2 19.365 35.08 1.159 1 18.01 ? CAG 1YO 201 A 1 HETATM 7 C CAH 1YO . . . B 2 21.244 35.168 -3.565 1 29.95 ? CAH 1YO 201 A 1 HETATM 8 C CAL 1YO . . . B 2 22.922 36.94 -3.151 1 40.87 ? CAL 1YO 201 A 1 HETATM 9 C CAM 1YO . . . B 2 22.575 35.781 -3.822 1 37.17 ? CAM 1YO 201 A 1 HETATM 10 C CAN 1YO . . . B 2 20.314 34.879 -0.824 1 20.49 ? CAN 1YO 201 A 1 HETATM 11 N NAB 1YO . . . B 2 20.584 32.998 0.637 1 15.68 ? NAB 1YO 201 A 1 HETATM 12 N NAI 1YO . . . B 2 19.126 36.18 0.435 1 19.59 ? NAI 1YO 201 A 1 HETATM 13 N NAJ 1YO . . . B 2 19.703 36.063 -0.764 1 20.07 ? NAJ 1YO 201 A 1 HETATM 14 N NAO 1YO . . . B 2 20.102 34.234 0.36 1 17.56 ? NAO 1YO 201 A 1 HETATM 15 S SAK 1YO . . . B 2 21.223 34.138 -2.135 1 22.55 ? SAK 1YO 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #