data_5DCL
#
_model_server_result.job_id            w5Inw8nkIwpFYz6lkmotHg 
_model_server_result.datetime_utc      '2025-03-09 02:37:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dcl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":315}' 
#
_entry.id    5DCL 
#
_exptl.entry_id    5DCL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    39 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DCL 
_cell.length_a            57.05 
_cell.length_b            107.13 
_cell.length_c            39.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DCL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 NA N N 
? 2 OA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5DCL 
_atom_sites.fract_transf_matrix[1][1]    0.017528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025329 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 301 8 EDO EDO . 
D 2 EDO A 1 302 1 EDO EDO . 
E 2 EDO A 1 303 1 EDO EDO . 
F 2 EDO A 1 304 1 EDO EDO . 
G 2 EDO A 1 305 1 EDO EDO . 
H 2 EDO A 1 306 1 EDO EDO . 
I 2 EDO A 1 307 1 EDO EDO . 
J 2 EDO A 1 308 1 EDO EDO . 
K 2 EDO A 1 309 1 EDO EDO . 
L 2 EDO A 1 310 1 EDO EDO . 
M 2 EDO A 1 311 1 EDO EDO . 
N 2 EDO A 1 312 1 EDO EDO . 
O 2 EDO A 1 313 1 EDO EDO . 
P 2 EDO A 1 314 1 EDO EDO . 
Q 2 EDO A 1 315 1 EDO EDO . 
R 2 EDO A 1 316 1 EDO EDO . 
S 2 EDO A 1 317 1 EDO EDO . 
T 2 EDO A 1 318 1 EDO EDO . 
U 2 EDO B 1 301 1 EDO EDO . 
V 2 EDO B 1 302 3 EDO EDO . 
W 2 EDO B 1 303 4 EDO EDO . 
X 2 EDO B 1 304 5 EDO EDO . 
Y 2 EDO B 1 305 6 EDO EDO . 
Z 2 EDO B 1 306 7 EDO EDO . 
AA 2 EDO B 1 307 1 EDO EDO . 
BA 2 EDO B 1 308 1 EDO EDO . 
CA 2 EDO B 1 309 1 EDO EDO . 
DA 2 EDO B 1 310 1 EDO EDO . 
EA 2 EDO B 1 311 1 EDO EDO . 
FA 2 EDO B 1 312 1 EDO EDO . 
GA 2 EDO B 1 313 1 EDO EDO . 
HA 2 EDO B 1 314 1 EDO EDO . 
IA 2 EDO B 1 315 1 EDO EDO . 
JA 2 EDO B 1 316 1 EDO EDO . 
KA 2 EDO B 1 317 1 EDO EDO . 
LA 2 EDO B 1 318 1 EDO EDO . 
MA 2 EDO B 1 319 1 EDO EDO . 
NA 2 EDO B 1 320 1 EDO EDO . 
OA 2 EDO B 1 321 1 EDO EDO . 
PA 3 HOH A 1 401 123 HOH HOH . 
PA 3 HOH A 2 402 87 HOH HOH . 
PA 3 HOH A 3 403 99 HOH HOH . 
PA 3 HOH A 4 404 93 HOH HOH . 
PA 3 HOH A 5 405 97 HOH HOH . 
PA 3 HOH A 6 406 55 HOH HOH . 
PA 3 HOH A 7 407 50 HOH HOH . 
PA 3 HOH A 8 408 76 HOH HOH . 
PA 3 HOH A 9 409 100 HOH HOH . 
PA 3 HOH A 10 410 28 HOH HOH . 
PA 3 HOH A 11 411 25 HOH HOH . 
PA 3 HOH A 12 412 2 HOH HOH . 
PA 3 HOH A 13 413 13 HOH HOH . 
PA 3 HOH A 14 414 53 HOH HOH . 
PA 3 HOH A 15 415 131 HOH HOH . 
PA 3 HOH A 16 416 4 HOH HOH . 
PA 3 HOH A 17 417 31 HOH HOH . 
PA 3 HOH A 18 418 34 HOH HOH . 
PA 3 HOH A 19 419 32 HOH HOH . 
PA 3 HOH A 20 420 109 HOH HOH . 
PA 3 HOH A 21 421 130 HOH HOH . 
PA 3 HOH A 22 422 24 HOH HOH . 
PA 3 HOH A 23 423 48 HOH HOH . 
PA 3 HOH A 24 424 3 HOH HOH . 
PA 3 HOH A 25 425 132 HOH HOH . 
PA 3 HOH A 26 426 19 HOH HOH . 
PA 3 HOH A 27 427 128 HOH HOH . 
PA 3 HOH A 28 428 35 HOH HOH . 
PA 3 HOH A 29 429 52 HOH HOH . 
PA 3 HOH A 30 430 54 HOH HOH . 
PA 3 HOH A 31 431 81 HOH HOH . 
PA 3 HOH A 32 432 86 HOH HOH . 
PA 3 HOH A 33 433 73 HOH HOH . 
PA 3 HOH A 34 434 121 HOH HOH . 
PA 3 HOH A 35 435 98 HOH HOH . 
PA 3 HOH A 36 436 47 HOH HOH . 
PA 3 HOH A 37 437 89 HOH HOH . 
PA 3 HOH A 38 438 10 HOH HOH . 
PA 3 HOH A 39 439 77 HOH HOH . 
PA 3 HOH A 40 440 51 HOH HOH . 
PA 3 HOH A 41 441 8 HOH HOH . 
PA 3 HOH A 42 442 45 HOH HOH . 
PA 3 HOH A 43 443 17 HOH HOH . 
PA 3 HOH A 44 444 39 HOH HOH . 
PA 3 HOH A 45 445 101 HOH HOH . 
PA 3 HOH A 46 446 134 HOH HOH . 
PA 3 HOH A 47 447 96 HOH HOH . 
PA 3 HOH A 48 448 94 HOH HOH . 
PA 3 HOH A 49 449 64 HOH HOH . 
PA 3 HOH A 50 450 84 HOH HOH . 
PA 3 HOH A 51 451 103 HOH HOH . 
PA 3 HOH A 52 452 88 HOH HOH . 
PA 3 HOH A 53 453 102 HOH HOH . 
PA 3 HOH A 54 454 126 HOH HOH . 
PA 3 HOH A 55 455 114 HOH HOH . 
PA 3 HOH A 56 456 133 HOH HOH . 
PA 3 HOH A 57 457 58 HOH HOH . 
PA 3 HOH A 58 458 68 HOH HOH . 
PA 3 HOH A 59 459 107 HOH HOH . 
PA 3 HOH A 60 460 112 HOH HOH . 
QA 3 HOH B 1 401 59 HOH HOH . 
QA 3 HOH B 2 402 124 HOH HOH . 
QA 3 HOH B 3 403 125 HOH HOH . 
QA 3 HOH B 4 404 12 HOH HOH . 
QA 3 HOH B 5 405 71 HOH HOH . 
QA 3 HOH B 6 406 80 HOH HOH . 
QA 3 HOH B 7 407 72 HOH HOH . 
QA 3 HOH B 8 408 70 HOH HOH . 
QA 3 HOH B 9 409 91 HOH HOH . 
QA 3 HOH B 10 410 137 HOH HOH . 
QA 3 HOH B 11 411 118 HOH HOH . 
QA 3 HOH B 12 412 26 HOH HOH . 
QA 3 HOH B 13 413 95 HOH HOH . 
QA 3 HOH B 14 414 135 HOH HOH . 
QA 3 HOH B 15 415 90 HOH HOH . 
QA 3 HOH B 16 416 104 HOH HOH . 
QA 3 HOH B 17 417 78 HOH HOH . 
QA 3 HOH B 18 418 16 HOH HOH . 
QA 3 HOH B 19 419 29 HOH HOH . 
QA 3 HOH B 20 420 37 HOH HOH . 
QA 3 HOH B 21 421 33 HOH HOH . 
QA 3 HOH B 22 422 14 HOH HOH . 
QA 3 HOH B 23 423 1 HOH HOH . 
QA 3 HOH B 24 424 7 HOH HOH . 
QA 3 HOH B 25 425 21 HOH HOH . 
QA 3 HOH B 26 426 15 HOH HOH . 
QA 3 HOH B 27 427 69 HOH HOH . 
QA 3 HOH B 28 428 18 HOH HOH . 
QA 3 HOH B 29 429 62 HOH HOH . 
QA 3 HOH B 30 430 110 HOH HOH . 
QA 3 HOH B 31 431 9 HOH HOH . 
QA 3 HOH B 32 432 56 HOH HOH . 
QA 3 HOH B 33 433 20 HOH HOH . 
QA 3 HOH B 34 434 63 HOH HOH . 
QA 3 HOH B 35 435 38 HOH HOH . 
QA 3 HOH B 36 436 30 HOH HOH . 
QA 3 HOH B 37 437 36 HOH HOH . 
QA 3 HOH B 38 438 60 HOH HOH . 
QA 3 HOH B 39 439 67 HOH HOH . 
QA 3 HOH B 40 440 40 HOH HOH . 
QA 3 HOH B 41 441 119 HOH HOH . 
QA 3 HOH B 42 442 27 HOH HOH . 
QA 3 HOH B 43 443 6 HOH HOH . 
QA 3 HOH B 44 444 5 HOH HOH . 
QA 3 HOH B 45 445 11 HOH HOH . 
QA 3 HOH B 46 446 82 HOH HOH . 
QA 3 HOH B 47 447 46 HOH HOH . 
QA 3 HOH B 48 448 74 HOH HOH . 
QA 3 HOH B 49 449 120 HOH HOH . 
QA 3 HOH B 50 450 61 HOH HOH . 
QA 3 HOH B 51 451 22 HOH HOH . 
QA 3 HOH B 52 452 85 HOH HOH . 
QA 3 HOH B 53 453 116 HOH HOH . 
QA 3 HOH B 54 454 66 HOH HOH . 
QA 3 HOH B 55 455 129 HOH HOH . 
QA 3 HOH B 56 456 23 HOH HOH . 
QA 3 HOH B 57 457 79 HOH HOH . 
QA 3 HOH B 58 458 57 HOH HOH . 
QA 3 HOH B 59 459 49 HOH HOH . 
QA 3 HOH B 60 460 92 HOH HOH . 
QA 3 HOH B 61 461 106 HOH HOH . 
QA 3 HOH B 62 462 136 HOH HOH . 
QA 3 HOH B 63 463 115 HOH HOH . 
QA 3 HOH B 64 464 43 HOH HOH . 
QA 3 HOH B 65 465 108 HOH HOH . 
QA 3 HOH B 66 466 122 HOH HOH . 
QA 3 HOH B 67 467 127 HOH HOH . 
QA 3 HOH B 68 468 83 HOH HOH . 
QA 3 HOH B 69 469 75 HOH HOH . 
QA 3 HOH B 70 470 117 HOH HOH . 
QA 3 HOH B 71 471 44 HOH HOH . 
QA 3 HOH B 72 472 113 HOH HOH . 
QA 3 HOH B 73 473 42 HOH HOH . 
QA 3 HOH B 74 474 65 HOH HOH . 
QA 3 HOH B 75 475 105 HOH HOH . 
QA 3 HOH B 76 476 41 HOH HOH . 
QA 3 HOH B 77 477 111 HOH HOH . 
QA 3 HOH B 78 478 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . IA 2 19.944 17.762 34.412 1 34.1 ? C1 EDO 315 B 1 
HETATM 2 O O1 EDO . . . IA 2 19.151 16.58 34.596 1 46.06 ? O1 EDO 315 B 1 
HETATM 3 C C2 EDO . . . IA 2 20.818 18.033 35.635 1 35.46 ? C2 EDO 315 B 1 
HETATM 4 O O2 EDO . . . IA 2 22.205 17.907 35.301 1 35.95 ? O2 EDO 315 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#