data_5DCW # _model_server_result.job_id zMX1ud14cJEqK7jJudlWJQ _model_server_result.datetime_utc '2024-12-01 19:09:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 5DCW # _exptl.entry_id 5DCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DCW _cell.length_a 141.2 _cell.length_b 141.2 _cell.length_c 106.05 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_675 x-y+4/3,-y+8/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 326.087432 70.7 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5DCW _atom_sites.fract_transf_matrix[1][1] 0.007082 _atom_sites.fract_transf_matrix[1][2] 0.004089 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 900 900 EDO EDO . C 2 EDO A 1 901 901 EDO EDO . D 2 EDO A 1 902 902 EDO EDO . E 2 EDO A 1 903 903 EDO EDO . F 3 HOH A 1 1001 10 HOH HOH . F 3 HOH A 2 1002 167 HOH HOH . F 3 HOH A 3 1003 212 HOH HOH . F 3 HOH A 4 1004 106 HOH HOH . F 3 HOH A 5 1005 33 HOH HOH . F 3 HOH A 6 1006 242 HOH HOH . F 3 HOH A 7 1007 275 HOH HOH . F 3 HOH A 8 1008 5 HOH HOH . F 3 HOH A 9 1009 210 HOH HOH . F 3 HOH A 10 1010 166 HOH HOH . F 3 HOH A 11 1011 6 HOH HOH . F 3 HOH A 12 1012 113 HOH HOH . F 3 HOH A 13 1013 292 HOH HOH . F 3 HOH A 14 1014 99 HOH HOH . F 3 HOH A 15 1015 170 HOH HOH . F 3 HOH A 16 1016 67 HOH HOH . F 3 HOH A 17 1017 200 HOH HOH . F 3 HOH A 18 1018 60 HOH HOH . F 3 HOH A 19 1019 137 HOH HOH . F 3 HOH A 20 1020 294 HOH HOH . F 3 HOH A 21 1021 158 HOH HOH . F 3 HOH A 22 1022 179 HOH HOH . F 3 HOH A 23 1023 130 HOH HOH . F 3 HOH A 24 1024 58 HOH HOH . F 3 HOH A 25 1025 93 HOH HOH . F 3 HOH A 26 1026 43 HOH HOH . F 3 HOH A 27 1027 284 HOH HOH . F 3 HOH A 28 1028 22 HOH HOH . F 3 HOH A 29 1029 72 HOH HOH . F 3 HOH A 30 1030 13 HOH HOH . F 3 HOH A 31 1031 25 HOH HOH . F 3 HOH A 32 1032 37 HOH HOH . F 3 HOH A 33 1033 312 HOH HOH . F 3 HOH A 34 1034 121 HOH HOH . F 3 HOH A 35 1035 78 HOH HOH . F 3 HOH A 36 1036 240 HOH HOH . F 3 HOH A 37 1037 96 HOH HOH . F 3 HOH A 38 1038 120 HOH HOH . F 3 HOH A 39 1039 131 HOH HOH . F 3 HOH A 40 1040 12 HOH HOH . F 3 HOH A 41 1041 225 HOH HOH . F 3 HOH A 42 1042 7 HOH HOH . F 3 HOH A 43 1043 23 HOH HOH . F 3 HOH A 44 1044 227 HOH HOH . F 3 HOH A 45 1045 261 HOH HOH . F 3 HOH A 46 1046 3 HOH HOH . F 3 HOH A 47 1047 160 HOH HOH . F 3 HOH A 48 1048 251 HOH HOH . F 3 HOH A 49 1049 45 HOH HOH . F 3 HOH A 50 1050 24 HOH HOH . F 3 HOH A 51 1051 8 HOH HOH . F 3 HOH A 52 1052 201 HOH HOH . F 3 HOH A 53 1053 104 HOH HOH . F 3 HOH A 54 1054 198 HOH HOH . F 3 HOH A 55 1055 29 HOH HOH . F 3 HOH A 56 1056 42 HOH HOH . F 3 HOH A 57 1057 205 HOH HOH . F 3 HOH A 58 1058 73 HOH HOH . F 3 HOH A 59 1059 54 HOH HOH . F 3 HOH A 60 1060 69 HOH HOH . F 3 HOH A 61 1061 34 HOH HOH . F 3 HOH A 62 1062 77 HOH HOH . F 3 HOH A 63 1063 46 HOH HOH . F 3 HOH A 64 1064 36 HOH HOH . F 3 HOH A 65 1065 17 HOH HOH . F 3 HOH A 66 1066 125 HOH HOH . F 3 HOH A 67 1067 82 HOH HOH . F 3 HOH A 68 1068 44 HOH HOH . F 3 HOH A 69 1069 108 HOH HOH . F 3 HOH A 70 1070 11 HOH HOH . F 3 HOH A 71 1071 56 HOH HOH . F 3 HOH A 72 1072 296 HOH HOH . F 3 HOH A 73 1073 194 HOH HOH . F 3 HOH A 74 1074 39 HOH HOH . F 3 HOH A 75 1075 187 HOH HOH . F 3 HOH A 76 1076 61 HOH HOH . F 3 HOH A 77 1077 325 HOH HOH . F 3 HOH A 78 1078 186 HOH HOH . F 3 HOH A 79 1079 31 HOH HOH . F 3 HOH A 80 1080 202 HOH HOH . F 3 HOH A 81 1081 316 HOH HOH . F 3 HOH A 82 1082 28 HOH HOH . F 3 HOH A 83 1083 176 HOH HOH . F 3 HOH A 84 1084 215 HOH HOH . F 3 HOH A 85 1085 129 HOH HOH . F 3 HOH A 86 1086 117 HOH HOH . F 3 HOH A 87 1087 265 HOH HOH . F 3 HOH A 88 1088 30 HOH HOH . F 3 HOH A 89 1089 317 HOH HOH . F 3 HOH A 90 1090 35 HOH HOH . F 3 HOH A 91 1091 274 HOH HOH . F 3 HOH A 92 1092 63 HOH HOH . F 3 HOH A 93 1093 256 HOH HOH . F 3 HOH A 94 1094 273 HOH HOH . F 3 HOH A 95 1095 244 HOH HOH . F 3 HOH A 96 1096 127 HOH HOH . F 3 HOH A 97 1097 51 HOH HOH . F 3 HOH A 98 1098 21 HOH HOH . F 3 HOH A 99 1099 144 HOH HOH . F 3 HOH A 100 1100 14 HOH HOH . F 3 HOH A 101 1101 47 HOH HOH . F 3 HOH A 102 1102 229 HOH HOH . F 3 HOH A 103 1103 235 HOH HOH . F 3 HOH A 104 1104 57 HOH HOH . F 3 HOH A 105 1105 110 HOH HOH . F 3 HOH A 106 1106 291 HOH HOH . F 3 HOH A 107 1107 9 HOH HOH . F 3 HOH A 108 1108 157 HOH HOH . F 3 HOH A 109 1109 171 HOH HOH . F 3 HOH A 110 1110 165 HOH HOH . F 3 HOH A 111 1111 64 HOH HOH . F 3 HOH A 112 1112 109 HOH HOH . F 3 HOH A 113 1113 62 HOH HOH . F 3 HOH A 114 1114 15 HOH HOH . F 3 HOH A 115 1115 188 HOH HOH . F 3 HOH A 116 1116 253 HOH HOH . F 3 HOH A 117 1117 285 HOH HOH . F 3 HOH A 118 1118 79 HOH HOH . F 3 HOH A 119 1119 66 HOH HOH . F 3 HOH A 120 1120 223 HOH HOH . F 3 HOH A 121 1121 26 HOH HOH . F 3 HOH A 122 1122 145 HOH HOH . F 3 HOH A 123 1123 148 HOH HOH . F 3 HOH A 124 1124 38 HOH HOH . F 3 HOH A 125 1125 213 HOH HOH . F 3 HOH A 126 1126 161 HOH HOH . F 3 HOH A 127 1127 263 HOH HOH . F 3 HOH A 128 1128 2 HOH HOH . F 3 HOH A 129 1129 185 HOH HOH . F 3 HOH A 130 1130 238 HOH HOH . F 3 HOH A 131 1131 272 HOH HOH . F 3 HOH A 132 1132 288 HOH HOH . F 3 HOH A 133 1133 268 HOH HOH . F 3 HOH A 134 1134 128 HOH HOH . F 3 HOH A 135 1135 246 HOH HOH . F 3 HOH A 136 1136 68 HOH HOH . F 3 HOH A 137 1137 1 HOH HOH . F 3 HOH A 138 1138 189 HOH HOH . F 3 HOH A 139 1139 211 HOH HOH . F 3 HOH A 140 1140 116 HOH HOH . F 3 HOH A 141 1141 204 HOH HOH . F 3 HOH A 142 1142 105 HOH HOH . F 3 HOH A 143 1143 279 HOH HOH . F 3 HOH A 144 1144 193 HOH HOH . F 3 HOH A 145 1145 151 HOH HOH . F 3 HOH A 146 1146 16 HOH HOH . F 3 HOH A 147 1147 271 HOH HOH . F 3 HOH A 148 1148 219 HOH HOH . F 3 HOH A 149 1149 173 HOH HOH . F 3 HOH A 150 1150 305 HOH HOH . F 3 HOH A 151 1151 303 HOH HOH . F 3 HOH A 152 1152 4 HOH HOH . F 3 HOH A 153 1153 88 HOH HOH . F 3 HOH A 154 1154 248 HOH HOH . F 3 HOH A 155 1155 19 HOH HOH . F 3 HOH A 156 1156 203 HOH HOH . F 3 HOH A 157 1157 27 HOH HOH . F 3 HOH A 158 1158 122 HOH HOH . F 3 HOH A 159 1159 270 HOH HOH . F 3 HOH A 160 1160 216 HOH HOH . F 3 HOH A 161 1161 100 HOH HOH . F 3 HOH A 162 1162 141 HOH HOH . F 3 HOH A 163 1163 208 HOH HOH . F 3 HOH A 164 1164 115 HOH HOH . F 3 HOH A 165 1165 76 HOH HOH . F 3 HOH A 166 1166 217 HOH HOH . F 3 HOH A 167 1167 233 HOH HOH . F 3 HOH A 168 1168 214 HOH HOH . F 3 HOH A 169 1169 323 HOH HOH . F 3 HOH A 170 1170 267 HOH HOH . F 3 HOH A 171 1171 75 HOH HOH . F 3 HOH A 172 1172 197 HOH HOH . F 3 HOH A 173 1173 169 HOH HOH . F 3 HOH A 174 1174 304 HOH HOH . F 3 HOH A 175 1175 89 HOH HOH . F 3 HOH A 176 1176 86 HOH HOH . F 3 HOH A 177 1177 221 HOH HOH . F 3 HOH A 178 1178 124 HOH HOH . F 3 HOH A 179 1179 134 HOH HOH . F 3 HOH A 180 1180 74 HOH HOH . F 3 HOH A 181 1181 196 HOH HOH . F 3 HOH A 182 1182 143 HOH HOH . F 3 HOH A 183 1183 183 HOH HOH . F 3 HOH A 184 1184 199 HOH HOH . F 3 HOH A 185 1185 231 HOH HOH . F 3 HOH A 186 1186 20 HOH HOH . F 3 HOH A 187 1187 18 HOH HOH . F 3 HOH A 188 1188 118 HOH HOH . F 3 HOH A 189 1189 112 HOH HOH . F 3 HOH A 190 1190 55 HOH HOH . F 3 HOH A 191 1191 147 HOH HOH . F 3 HOH A 192 1192 252 HOH HOH . F 3 HOH A 193 1193 133 HOH HOH . F 3 HOH A 194 1194 87 HOH HOH . F 3 HOH A 195 1195 236 HOH HOH . F 3 HOH A 196 1196 192 HOH HOH . F 3 HOH A 197 1197 91 HOH HOH . F 3 HOH A 198 1198 49 HOH HOH . F 3 HOH A 199 1199 307 HOH HOH . F 3 HOH A 200 1200 313 HOH HOH . F 3 HOH A 201 1201 190 HOH HOH . F 3 HOH A 202 1202 297 HOH HOH . F 3 HOH A 203 1203 182 HOH HOH . F 3 HOH A 204 1204 254 HOH HOH . F 3 HOH A 205 1205 228 HOH HOH . F 3 HOH A 206 1206 224 HOH HOH . F 3 HOH A 207 1207 142 HOH HOH . F 3 HOH A 208 1208 136 HOH HOH . F 3 HOH A 209 1209 276 HOH HOH . F 3 HOH A 210 1210 140 HOH HOH . F 3 HOH A 211 1211 249 HOH HOH . F 3 HOH A 212 1212 48 HOH HOH . F 3 HOH A 213 1213 286 HOH HOH . F 3 HOH A 214 1214 222 HOH HOH . F 3 HOH A 215 1215 83 HOH HOH . F 3 HOH A 216 1216 52 HOH HOH . F 3 HOH A 217 1217 247 HOH HOH . F 3 HOH A 218 1218 85 HOH HOH . F 3 HOH A 219 1219 277 HOH HOH . F 3 HOH A 220 1220 234 HOH HOH . F 3 HOH A 221 1221 237 HOH HOH . F 3 HOH A 222 1222 266 HOH HOH . F 3 HOH A 223 1223 283 HOH HOH . F 3 HOH A 224 1224 90 HOH HOH . F 3 HOH A 225 1225 139 HOH HOH . F 3 HOH A 226 1226 154 HOH HOH . F 3 HOH A 227 1227 41 HOH HOH . F 3 HOH A 228 1228 318 HOH HOH . F 3 HOH A 229 1229 191 HOH HOH . F 3 HOH A 230 1230 218 HOH HOH . F 3 HOH A 231 1231 32 HOH HOH . F 3 HOH A 232 1232 220 HOH HOH . F 3 HOH A 233 1233 184 HOH HOH . F 3 HOH A 234 1234 243 HOH HOH . F 3 HOH A 235 1235 295 HOH HOH . F 3 HOH A 236 1236 293 HOH HOH . F 3 HOH A 237 1237 308 HOH HOH . F 3 HOH A 238 1238 132 HOH HOH . F 3 HOH A 239 1239 269 HOH HOH . F 3 HOH A 240 1240 123 HOH HOH . F 3 HOH A 241 1241 156 HOH HOH . F 3 HOH A 242 1242 255 HOH HOH . F 3 HOH A 243 1243 195 HOH HOH . F 3 HOH A 244 1244 326 HOH HOH . F 3 HOH A 245 1245 311 HOH HOH . F 3 HOH A 246 1246 239 HOH HOH . F 3 HOH A 247 1247 172 HOH HOH . F 3 HOH A 248 1248 245 HOH HOH . F 3 HOH A 249 1249 324 HOH HOH . F 3 HOH A 250 1250 257 HOH HOH . F 3 HOH A 251 1251 282 HOH HOH . F 3 HOH A 252 1252 168 HOH HOH . F 3 HOH A 253 1253 94 HOH HOH . F 3 HOH A 254 1254 259 HOH HOH . F 3 HOH A 255 1255 232 HOH HOH . F 3 HOH A 256 1256 159 HOH HOH . F 3 HOH A 257 1257 107 HOH HOH . F 3 HOH A 258 1258 226 HOH HOH . F 3 HOH A 259 1259 92 HOH HOH . F 3 HOH A 260 1260 114 HOH HOH . F 3 HOH A 261 1261 177 HOH HOH . F 3 HOH A 262 1262 280 HOH HOH . F 3 HOH A 263 1263 119 HOH HOH . F 3 HOH A 264 1264 320 HOH HOH . F 3 HOH A 265 1265 175 HOH HOH . F 3 HOH A 266 1266 153 HOH HOH . F 3 HOH A 267 1267 59 HOH HOH . F 3 HOH A 268 1268 241 HOH HOH . F 3 HOH A 269 1269 84 HOH HOH . F 3 HOH A 270 1270 260 HOH HOH . F 3 HOH A 271 1271 306 HOH HOH . F 3 HOH A 272 1272 71 HOH HOH . F 3 HOH A 273 1273 40 HOH HOH . F 3 HOH A 274 1274 262 HOH HOH . F 3 HOH A 275 1275 321 HOH HOH . F 3 HOH A 276 1276 230 HOH HOH . F 3 HOH A 277 1277 81 HOH HOH . F 3 HOH A 278 1278 258 HOH HOH . F 3 HOH A 279 1279 95 HOH HOH . F 3 HOH A 280 1280 162 HOH HOH . F 3 HOH A 281 1281 53 HOH HOH . F 3 HOH A 282 1282 278 HOH HOH . F 3 HOH A 283 1283 163 HOH HOH . F 3 HOH A 284 1284 287 HOH HOH . F 3 HOH A 285 1285 290 HOH HOH . F 3 HOH A 286 1286 111 HOH HOH . F 3 HOH A 287 1287 101 HOH HOH . F 3 HOH A 288 1288 155 HOH HOH . F 3 HOH A 289 1289 70 HOH HOH . F 3 HOH A 290 1290 146 HOH HOH . F 3 HOH A 291 1291 264 HOH HOH . F 3 HOH A 292 1292 178 HOH HOH . F 3 HOH A 293 1293 80 HOH HOH . F 3 HOH A 294 1294 135 HOH HOH . F 3 HOH A 295 1295 206 HOH HOH . F 3 HOH A 296 1296 98 HOH HOH . F 3 HOH A 297 1297 103 HOH HOH . F 3 HOH A 298 1298 322 HOH HOH . F 3 HOH A 299 1299 174 HOH HOH . F 3 HOH A 300 1300 250 HOH HOH . F 3 HOH A 301 1301 97 HOH HOH . F 3 HOH A 302 1302 152 HOH HOH . F 3 HOH A 303 1303 126 HOH HOH . F 3 HOH A 304 1304 300 HOH HOH . F 3 HOH A 305 1305 299 HOH HOH . F 3 HOH A 306 1306 50 HOH HOH . F 3 HOH A 307 1307 102 HOH HOH . F 3 HOH A 308 1308 65 HOH HOH . F 3 HOH A 309 1309 310 HOH HOH . F 3 HOH A 310 1310 301 HOH HOH . F 3 HOH A 311 1311 302 HOH HOH . F 3 HOH A 312 1312 150 HOH HOH . F 3 HOH A 313 1313 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 -75.97 142.154 17.07 1 36.26 ? C1 EDO 903 A 1 HETATM 2 O O1 EDO . . . E 2 -76.324 140.902 16.437 1 40.01 ? O1 EDO 903 A 1 HETATM 3 C C2 EDO . . . E 2 -74.49 142.157 17.335 1 34.99 ? C2 EDO 903 A 1 HETATM 4 O O2 EDO . . . E 2 -73.756 142.703 16.264 1 32.97 ? O2 EDO 903 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #