data_5DD4 # _model_server_result.job_id 60lQNFI2C8ncTHR4H3ku9w _model_server_result.datetime_utc '2025-01-10 13:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5DD4 # _exptl.entry_id 5DD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DD4 _cell.length_a 123.735 _cell.length_b 123.735 _cell.length_c 123.735 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 x,-y,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 0 61.8675 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 42 A ALA 39 1_555 A N MSE 43 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 43 A MSE 40 1_555 A N GLY 44 A GLY 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LEU 48 A LEU 45 1_555 A N MSE 49 A MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 49 A MSE 46 1_555 A N GLY 50 A GLY 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C TYR 77 A TYR 74 1_555 A N MSE 78 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 78 A MSE 75 1_555 A N GLU 79 A GLU 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale7 A C GLU 136 A GLU 133 1_555 A N MSE 137 A MSE 134 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C GLU 136 A GLU 133 1_555 A N MSE 137 A MSE 134 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C MSE 137 A MSE 134 1_555 A N VAL 138 A VAL 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C GLU 143 A GLU 140 1_555 A N MSE 144 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 144 A MSE 141 1_555 A N MSE 145 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale12 A C MSE 145 A MSE 142 1_555 A N LYS 146 A LYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C PRO 179 A PRO 176 1_555 A N MSE 180 A MSE 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 A C MSE 180 A MSE 177 1_555 A N ASP 181 A ASP 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 A C GLU 191 A GLU 188 1_555 A N MSE 192 A MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 192 A MSE 189 1_555 A N ASP 193 A ASP 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5DD4 _atom_sites.fract_transf_matrix[1][1] 0.008082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 3 ACT A 1 302 1 ACT ACT . D 4 HOH A 1 401 6 HOH HOH . D 4 HOH A 2 402 11 HOH HOH . D 4 HOH A 3 403 10 HOH HOH . D 4 HOH A 4 404 7 HOH HOH . D 4 HOH A 5 405 8 HOH HOH . D 4 HOH A 6 406 26 HOH HOH . D 4 HOH A 7 407 13 HOH HOH . D 4 HOH A 8 408 3 HOH HOH . D 4 HOH A 9 409 15 HOH HOH . D 4 HOH A 10 410 28 HOH HOH . D 4 HOH A 11 411 18 HOH HOH . D 4 HOH A 12 412 1 HOH HOH . D 4 HOH A 13 413 16 HOH HOH . D 4 HOH A 14 414 4 HOH HOH . D 4 HOH A 15 415 5 HOH HOH . D 4 HOH A 16 416 27 HOH HOH . D 4 HOH A 17 417 25 HOH HOH . D 4 HOH A 18 418 12 HOH HOH . D 4 HOH A 19 419 24 HOH HOH . D 4 HOH A 20 420 9 HOH HOH . D 4 HOH A 21 421 2 HOH HOH . D 4 HOH A 22 422 23 HOH HOH . D 4 HOH A 23 423 21 HOH HOH . D 4 HOH A 24 424 20 HOH HOH . D 4 HOH A 25 425 19 HOH HOH . D 4 HOH A 26 426 14 HOH HOH . D 4 HOH A 27 427 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 3 54.086 -1.704 37.653 1 52.54 ? C ACT 302 A 1 HETATM 2 O O ACT . . . C 3 53.648 -2.055 36.525 1 51.36 ? O ACT 302 A 1 HETATM 3 O OXT ACT . . . C 3 54.123 -0.498 38.026 1 48.76 ? OXT ACT 302 A 1 HETATM 4 C CH3 ACT . . . C 3 54.575 -2.77 38.596 1 50.8 ? CH3 ACT 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #