data_5DDA # _model_server_result.job_id zW8PaLUMFVX2cKsSYg7dsg _model_server_result.datetime_utc '2024-11-06 17:46:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5DDA # _exptl.entry_id 5DDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DDA _cell.length_a 48.133 _cell.length_b 79.998 _cell.length_c 124.668 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 H N N ? 3 N N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 127 n n S C1 DMS sing 128 n n S C2 DMS sing 129 n n C1 H11 DMS sing 130 n n C1 H12 DMS sing 131 n n C1 H13 DMS sing 132 n n C2 H21 DMS sing 133 n n C2 H22 DMS sing 134 n n C2 H23 DMS sing 135 n n # _atom_sites.entry_id 5DDA _atom_sites.fract_transf_matrix[1][1] 0.020776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 59M A 1 601 601 59M 59M . C 3 DMS A 1 602 602 DMS DMS . D 3 DMS A 1 603 603 DMS DMS . E 4 PGE A 1 604 604 PGE PGE . F 4 PGE A 1 605 605 PGE PGE . G 5 EDO A 1 606 606 EDO EDO . H 3 DMS A 1 607 607 DMS DMS . I 6 SO4 A 1 608 608 SO4 SO4 . J 6 SO4 A 1 609 609 SO4 SO4 . K 6 SO4 A 1 610 610 SO4 SO4 . L 6 SO4 A 1 611 611 SO4 SO4 . M 6 SO4 A 1 612 612 SO4 SO4 . N 3 DMS A 1 613 613 DMS DMS . O 7 HOH A 1 701 701 HOH HOH . O 7 HOH A 2 702 702 HOH HOH . O 7 HOH A 3 703 703 HOH HOH . O 7 HOH A 4 704 704 HOH HOH . O 7 HOH A 5 705 705 HOH HOH . O 7 HOH A 6 706 706 HOH HOH . O 7 HOH A 7 707 707 HOH HOH . O 7 HOH A 8 708 708 HOH HOH . O 7 HOH A 9 709 709 HOH HOH . O 7 HOH A 10 710 710 HOH HOH . O 7 HOH A 11 711 711 HOH HOH . O 7 HOH A 12 712 712 HOH HOH . O 7 HOH A 13 713 713 HOH HOH . O 7 HOH A 14 714 714 HOH HOH . O 7 HOH A 15 715 715 HOH HOH . O 7 HOH A 16 716 716 HOH HOH . O 7 HOH A 17 717 717 HOH HOH . O 7 HOH A 18 718 718 HOH HOH . O 7 HOH A 19 719 719 HOH HOH . O 7 HOH A 20 720 720 HOH HOH . O 7 HOH A 21 721 721 HOH HOH . O 7 HOH A 22 722 722 HOH HOH . O 7 HOH A 23 723 723 HOH HOH . O 7 HOH A 24 724 724 HOH HOH . O 7 HOH A 25 725 725 HOH HOH . O 7 HOH A 26 726 726 HOH HOH . O 7 HOH A 27 727 727 HOH HOH . O 7 HOH A 28 728 728 HOH HOH . O 7 HOH A 29 729 729 HOH HOH . O 7 HOH A 30 730 730 HOH HOH . O 7 HOH A 31 731 731 HOH HOH . O 7 HOH A 32 732 732 HOH HOH . O 7 HOH A 33 733 733 HOH HOH . O 7 HOH A 34 734 734 HOH HOH . O 7 HOH A 35 735 735 HOH HOH . O 7 HOH A 36 736 736 HOH HOH . O 7 HOH A 37 737 737 HOH HOH . O 7 HOH A 38 738 738 HOH HOH . O 7 HOH A 39 739 739 HOH HOH . O 7 HOH A 40 740 740 HOH HOH . O 7 HOH A 41 741 741 HOH HOH . O 7 HOH A 42 742 742 HOH HOH . O 7 HOH A 43 743 743 HOH HOH . O 7 HOH A 44 744 744 HOH HOH . O 7 HOH A 45 745 745 HOH HOH . O 7 HOH A 46 746 746 HOH HOH . O 7 HOH A 47 747 747 HOH HOH . O 7 HOH A 48 748 748 HOH HOH . O 7 HOH A 49 749 749 HOH HOH . O 7 HOH A 50 750 750 HOH HOH . O 7 HOH A 51 751 751 HOH HOH . O 7 HOH A 52 752 752 HOH HOH . O 7 HOH A 53 753 753 HOH HOH . O 7 HOH A 54 754 754 HOH HOH . O 7 HOH A 55 755 755 HOH HOH . O 7 HOH A 56 756 756 HOH HOH . O 7 HOH A 57 757 757 HOH HOH . O 7 HOH A 58 758 758 HOH HOH . O 7 HOH A 59 759 759 HOH HOH . O 7 HOH A 60 760 760 HOH HOH . O 7 HOH A 61 761 761 HOH HOH . O 7 HOH A 62 762 762 HOH HOH . O 7 HOH A 63 763 763 HOH HOH . O 7 HOH A 64 764 764 HOH HOH . O 7 HOH A 65 765 765 HOH HOH . O 7 HOH A 66 766 766 HOH HOH . O 7 HOH A 67 767 767 HOH HOH . O 7 HOH A 68 768 768 HOH HOH . O 7 HOH A 69 769 769 HOH HOH . O 7 HOH A 70 770 770 HOH HOH . O 7 HOH A 71 771 771 HOH HOH . O 7 HOH A 72 772 772 HOH HOH . O 7 HOH A 73 773 773 HOH HOH . O 7 HOH A 74 774 774 HOH HOH . O 7 HOH A 75 775 775 HOH HOH . O 7 HOH A 76 776 776 HOH HOH . O 7 HOH A 77 777 777 HOH HOH . O 7 HOH A 78 778 778 HOH HOH . O 7 HOH A 79 779 779 HOH HOH . O 7 HOH A 80 780 780 HOH HOH . O 7 HOH A 81 781 781 HOH HOH . O 7 HOH A 82 782 782 HOH HOH . O 7 HOH A 83 783 783 HOH HOH . O 7 HOH A 84 784 784 HOH HOH . O 7 HOH A 85 785 785 HOH HOH . O 7 HOH A 86 786 786 HOH HOH . O 7 HOH A 87 787 787 HOH HOH . O 7 HOH A 88 788 788 HOH HOH . O 7 HOH A 89 789 789 HOH HOH . O 7 HOH A 90 790 790 HOH HOH . O 7 HOH A 91 791 791 HOH HOH . O 7 HOH A 92 792 792 HOH HOH . O 7 HOH A 93 793 793 HOH HOH . O 7 HOH A 94 794 794 HOH HOH . O 7 HOH A 95 795 795 HOH HOH . O 7 HOH A 96 796 796 HOH HOH . O 7 HOH A 97 797 797 HOH HOH . O 7 HOH A 98 798 798 HOH HOH . O 7 HOH A 99 799 799 HOH HOH . O 7 HOH A 100 800 800 HOH HOH . O 7 HOH A 101 801 801 HOH HOH . O 7 HOH A 102 802 802 HOH HOH . O 7 HOH A 103 803 803 HOH HOH . O 7 HOH A 104 804 804 HOH HOH . O 7 HOH A 105 805 805 HOH HOH . O 7 HOH A 106 806 806 HOH HOH . O 7 HOH A 107 807 807 HOH HOH . O 7 HOH A 108 808 808 HOH HOH . O 7 HOH A 109 809 809 HOH HOH . O 7 HOH A 110 810 810 HOH HOH . O 7 HOH A 111 811 811 HOH HOH . O 7 HOH A 112 812 812 HOH HOH . O 7 HOH A 113 813 813 HOH HOH . O 7 HOH A 114 814 814 HOH HOH . O 7 HOH A 115 815 815 HOH HOH . O 7 HOH A 116 816 816 HOH HOH . O 7 HOH A 117 817 817 HOH HOH . O 7 HOH A 118 818 818 HOH HOH . O 7 HOH A 119 819 819 HOH HOH . O 7 HOH A 120 820 820 HOH HOH . O 7 HOH A 121 821 821 HOH HOH . O 7 HOH A 122 822 822 HOH HOH . O 7 HOH A 123 823 823 HOH HOH . O 7 HOH A 124 824 824 HOH HOH . O 7 HOH A 125 825 825 HOH HOH . O 7 HOH A 126 826 826 HOH HOH . O 7 HOH A 127 827 827 HOH HOH . O 7 HOH A 128 828 828 HOH HOH . O 7 HOH A 129 829 829 HOH HOH . O 7 HOH A 130 830 830 HOH HOH . O 7 HOH A 131 831 831 HOH HOH . O 7 HOH A 132 832 832 HOH HOH . O 7 HOH A 133 833 833 HOH HOH . O 7 HOH A 134 834 834 HOH HOH . O 7 HOH A 135 835 835 HOH HOH . O 7 HOH A 136 836 836 HOH HOH . O 7 HOH A 137 837 837 HOH HOH . O 7 HOH A 138 838 838 HOH HOH . O 7 HOH A 139 839 839 HOH HOH . O 7 HOH A 140 840 840 HOH HOH . O 7 HOH A 141 841 841 HOH HOH . O 7 HOH A 142 842 842 HOH HOH . O 7 HOH A 143 843 843 HOH HOH . O 7 HOH A 144 844 844 HOH HOH . O 7 HOH A 145 845 845 HOH HOH . O 7 HOH A 146 846 846 HOH HOH . O 7 HOH A 147 847 847 HOH HOH . O 7 HOH A 148 848 848 HOH HOH . O 7 HOH A 149 849 849 HOH HOH . O 7 HOH A 150 850 850 HOH HOH . O 7 HOH A 151 851 851 HOH HOH . O 7 HOH A 152 852 852 HOH HOH . O 7 HOH A 153 853 853 HOH HOH . O 7 HOH A 154 854 854 HOH HOH . O 7 HOH A 155 855 855 HOH HOH . O 7 HOH A 156 856 856 HOH HOH . O 7 HOH A 157 857 857 HOH HOH . O 7 HOH A 158 858 858 HOH HOH . O 7 HOH A 159 859 859 HOH HOH . O 7 HOH A 160 860 860 HOH HOH . O 7 HOH A 161 861 861 HOH HOH . O 7 HOH A 162 862 862 HOH HOH . O 7 HOH A 163 863 863 HOH HOH . O 7 HOH A 164 864 864 HOH HOH . O 7 HOH A 165 865 865 HOH HOH . O 7 HOH A 166 866 866 HOH HOH . O 7 HOH A 167 867 867 HOH HOH . O 7 HOH A 168 868 868 HOH HOH . O 7 HOH A 169 869 869 HOH HOH . O 7 HOH A 170 870 870 HOH HOH . O 7 HOH A 171 871 871 HOH HOH . O 7 HOH A 172 872 872 HOH HOH . O 7 HOH A 173 873 873 HOH HOH . O 7 HOH A 174 874 874 HOH HOH . O 7 HOH A 175 875 875 HOH HOH . O 7 HOH A 176 876 876 HOH HOH . O 7 HOH A 177 877 877 HOH HOH . O 7 HOH A 178 878 878 HOH HOH . O 7 HOH A 179 879 879 HOH HOH . O 7 HOH A 180 880 880 HOH HOH . O 7 HOH A 181 881 881 HOH HOH . O 7 HOH A 182 882 882 HOH HOH . O 7 HOH A 183 883 883 HOH HOH . O 7 HOH A 184 884 884 HOH HOH . O 7 HOH A 185 885 885 HOH HOH . O 7 HOH A 186 886 886 HOH HOH . O 7 HOH A 187 887 887 HOH HOH . O 7 HOH A 188 888 888 HOH HOH . O 7 HOH A 189 889 889 HOH HOH . O 7 HOH A 190 890 890 HOH HOH . O 7 HOH A 191 891 891 HOH HOH . O 7 HOH A 192 892 892 HOH HOH . O 7 HOH A 193 893 893 HOH HOH . O 7 HOH A 194 894 894 HOH HOH . O 7 HOH A 195 895 895 HOH HOH . O 7 HOH A 196 896 896 HOH HOH . O 7 HOH A 197 897 897 HOH HOH . O 7 HOH A 198 898 898 HOH HOH . O 7 HOH A 199 899 899 HOH HOH . O 7 HOH A 200 900 900 HOH HOH . O 7 HOH A 201 901 901 HOH HOH . O 7 HOH A 202 902 902 HOH HOH . O 7 HOH A 203 903 903 HOH HOH . O 7 HOH A 204 904 904 HOH HOH . O 7 HOH A 205 905 905 HOH HOH . O 7 HOH A 206 906 906 HOH HOH . O 7 HOH A 207 907 907 HOH HOH . O 7 HOH A 208 908 908 HOH HOH . O 7 HOH A 209 909 909 HOH HOH . O 7 HOH A 210 910 910 HOH HOH . O 7 HOH A 211 911 911 HOH HOH . O 7 HOH A 212 912 912 HOH HOH . O 7 HOH A 213 913 913 HOH HOH . O 7 HOH A 214 914 914 HOH HOH . O 7 HOH A 215 915 915 HOH HOH . O 7 HOH A 216 916 916 HOH HOH . O 7 HOH A 217 917 917 HOH HOH . O 7 HOH A 218 918 918 HOH HOH . O 7 HOH A 219 919 919 HOH HOH . O 7 HOH A 220 920 920 HOH HOH . O 7 HOH A 221 921 921 HOH HOH . O 7 HOH A 222 922 922 HOH HOH . O 7 HOH A 223 923 923 HOH HOH . O 7 HOH A 224 924 924 HOH HOH . O 7 HOH A 225 925 925 HOH HOH . O 7 HOH A 226 926 926 HOH HOH . O 7 HOH A 227 927 927 HOH HOH . O 7 HOH A 228 928 928 HOH HOH . O 7 HOH A 229 929 929 HOH HOH . O 7 HOH A 230 930 930 HOH HOH . O 7 HOH A 231 931 931 HOH HOH . O 7 HOH A 232 932 932 HOH HOH . O 7 HOH A 233 933 933 HOH HOH . O 7 HOH A 234 934 934 HOH HOH . O 7 HOH A 235 935 935 HOH HOH . O 7 HOH A 236 936 936 HOH HOH . O 7 HOH A 237 937 937 HOH HOH . O 7 HOH A 238 938 938 HOH HOH . O 7 HOH A 239 939 939 HOH HOH . O 7 HOH A 240 940 940 HOH HOH . O 7 HOH A 241 941 941 HOH HOH . O 7 HOH A 242 942 942 HOH HOH . O 7 HOH A 243 943 943 HOH HOH . O 7 HOH A 244 944 944 HOH HOH . O 7 HOH A 245 945 945 HOH HOH . O 7 HOH A 246 946 946 HOH HOH . O 7 HOH A 247 947 947 HOH HOH . O 7 HOH A 248 948 948 HOH HOH . O 7 HOH A 249 949 949 HOH HOH . O 7 HOH A 250 950 950 HOH HOH . O 7 HOH A 251 951 951 HOH HOH . O 7 HOH A 252 952 952 HOH HOH . O 7 HOH A 253 953 953 HOH HOH . O 7 HOH A 254 954 954 HOH HOH . O 7 HOH A 255 955 955 HOH HOH . O 7 HOH A 256 956 956 HOH HOH . O 7 HOH A 257 957 957 HOH HOH . O 7 HOH A 258 958 958 HOH HOH . O 7 HOH A 259 959 959 HOH HOH . O 7 HOH A 260 960 960 HOH HOH . O 7 HOH A 261 961 961 HOH HOH . O 7 HOH A 262 962 962 HOH HOH . O 7 HOH A 263 963 963 HOH HOH . O 7 HOH A 264 964 964 HOH HOH . O 7 HOH A 265 965 965 HOH HOH . O 7 HOH A 266 966 966 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . A . C 3 9.825 7.943 -9.006 0.5 38.47 ? S DMS 602 A 1 HETATM 2 O O DMS . A . C 3 10.517 9.153 -8.52 0.5 51.75 ? O DMS 602 A 1 HETATM 3 C C1 DMS . A . C 3 10.829 6.607 -8.634 0.5 36.28 ? C1 DMS 602 A 1 HETATM 4 C C2 DMS . A . C 3 8.408 7.706 -8.074 0.5 36.03 ? C2 DMS 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #