data_5DDD # _model_server_result.job_id pfwYvmQgnDrWnOvESdLtTg _model_server_result.datetime_utc '2024-11-23 07:12:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ddd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5DDD # _exptl.entry_id 5DDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.518 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-(5,5-dimethyl-4,5-dihydro-1,3-thiazol-2-yl)piperazin-1-yl]-6-(2-fluoroethyl)thieno[2,3-d]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DDD _cell.length_a 48.307 _cell.length_b 79.713 _cell.length_c 124.811 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H22 F N5 S2' _chem_comp.formula_weight 379.518 _chem_comp.id 59X _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-(5,5-dimethyl-4,5-dihydro-1,3-thiazol-2-yl)piperazin-1-yl]-6-(2-fluoroethyl)thieno[2,3-d]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MI-836 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAI CAK 59X sing 1 n n CAI NAW 59X sing 2 n n CAK NAX 59X sing 3 n n NAM CAL 59X sing 4 n n NAM CAR 59X doub 5 n n NAX C6 59X sing 6 n n NAX CAJ 59X sing 7 n n N1 C6 59X doub 8 n y N1 C2 59X sing 9 n y C6 C5 59X sing 10 n y C2 N3 59X doub 11 n y NAW CAR 59X sing 12 n n NAW CAH 59X sing 13 n n CAL CAY 59X sing 14 n n CAJ CAH 59X sing 15 n n CAR SAP 59X sing 16 n n FAC CAF 59X sing 17 n n C5 C4 59X doub 18 n y C5 CAE 59X sing 19 n y CAF CAG 59X sing 20 n n N3 C4 59X sing 21 n y C4 SAQ 59X sing 22 n y CAE CAS 59X doub 23 n y CAS SAQ 59X sing 24 n y CAS CAG 59X sing 25 n n CAB CAY 59X sing 26 n n CAY SAP 59X sing 27 n n CAY CAA 59X sing 28 n n CAF H1 59X sing 29 n n CAF H2 59X sing 30 n n CAG H3 59X sing 31 n n CAG H4 59X sing 32 n n CAE H5 59X sing 33 n n C2 H6 59X sing 34 n n CAK H7 59X sing 35 n n CAK H8 59X sing 36 n n CAI H9 59X sing 37 n n CAI H10 59X sing 38 n n CAJ H11 59X sing 39 n n CAJ H12 59X sing 40 n n CAH H13 59X sing 41 n n CAH H14 59X sing 42 n n CAA H15 59X sing 43 n n CAA H16 59X sing 44 n n CAA H17 59X sing 45 n n CAB H18 59X sing 46 n n CAB H19 59X sing 47 n n CAB H20 59X sing 48 n n CAL H21 59X sing 49 n n CAL H22 59X sing 50 n n # _atom_sites.entry_id 5DDD _atom_sites.fract_transf_matrix[1][1] 0.020701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 59X A 1 601 601 59X 59X . C 3 SO4 A 1 602 602 SO4 SO4 . D 3 SO4 A 1 603 603 SO4 SO4 . E 3 SO4 A 1 604 604 SO4 SO4 . F 3 SO4 A 1 605 605 SO4 SO4 . G 4 DMS A 1 606 606 DMS DMS . H 4 DMS A 1 607 607 DMS DMS . I 4 DMS A 1 608 608 DMS DMS . J 5 PG4 A 1 609 609 PG4 PG4 . K 6 PEG A 1 610 610 PEG PEG . L 4 DMS A 1 611 611 DMS DMS . M 7 HOH A 1 701 701 HOH HOH . M 7 HOH A 2 702 702 HOH HOH . M 7 HOH A 3 703 703 HOH HOH . M 7 HOH A 4 704 704 HOH HOH . M 7 HOH A 5 705 705 HOH HOH . M 7 HOH A 6 706 706 HOH HOH . M 7 HOH A 7 707 707 HOH HOH . M 7 HOH A 8 708 708 HOH HOH . M 7 HOH A 9 709 709 HOH HOH . M 7 HOH A 10 710 710 HOH HOH . M 7 HOH A 11 711 711 HOH HOH . M 7 HOH A 12 712 712 HOH HOH . M 7 HOH A 13 713 713 HOH HOH . M 7 HOH A 14 714 714 HOH HOH . M 7 HOH A 15 715 715 HOH HOH . M 7 HOH A 16 716 716 HOH HOH . M 7 HOH A 17 717 717 HOH HOH . M 7 HOH A 18 718 718 HOH HOH . M 7 HOH A 19 719 719 HOH HOH . M 7 HOH A 20 720 720 HOH HOH . M 7 HOH A 21 721 721 HOH HOH . M 7 HOH A 22 722 722 HOH HOH . M 7 HOH A 23 723 723 HOH HOH . M 7 HOH A 24 724 724 HOH HOH . M 7 HOH A 25 725 725 HOH HOH . M 7 HOH A 26 726 726 HOH HOH . M 7 HOH A 27 727 727 HOH HOH . M 7 HOH A 28 728 728 HOH HOH . M 7 HOH A 29 729 729 HOH HOH . M 7 HOH A 30 730 730 HOH HOH . M 7 HOH A 31 731 731 HOH HOH . M 7 HOH A 32 732 732 HOH HOH . M 7 HOH A 33 733 733 HOH HOH . M 7 HOH A 34 734 734 HOH HOH . M 7 HOH A 35 735 735 HOH HOH . M 7 HOH A 36 736 736 HOH HOH . M 7 HOH A 37 737 737 HOH HOH . M 7 HOH A 38 738 738 HOH HOH . M 7 HOH A 39 739 739 HOH HOH . M 7 HOH A 40 740 740 HOH HOH . M 7 HOH A 41 741 741 HOH HOH . M 7 HOH A 42 742 742 HOH HOH . M 7 HOH A 43 743 743 HOH HOH . M 7 HOH A 44 744 744 HOH HOH . M 7 HOH A 45 745 745 HOH HOH . M 7 HOH A 46 746 746 HOH HOH . M 7 HOH A 47 747 747 HOH HOH . M 7 HOH A 48 748 748 HOH HOH . M 7 HOH A 49 749 749 HOH HOH . M 7 HOH A 50 750 750 HOH HOH . M 7 HOH A 51 751 751 HOH HOH . M 7 HOH A 52 752 752 HOH HOH . M 7 HOH A 53 753 753 HOH HOH . M 7 HOH A 54 754 754 HOH HOH . M 7 HOH A 55 755 755 HOH HOH . M 7 HOH A 56 756 756 HOH HOH . M 7 HOH A 57 757 757 HOH HOH . M 7 HOH A 58 758 758 HOH HOH . M 7 HOH A 59 759 759 HOH HOH . M 7 HOH A 60 760 760 HOH HOH . M 7 HOH A 61 761 761 HOH HOH . M 7 HOH A 62 762 762 HOH HOH . M 7 HOH A 63 763 763 HOH HOH . M 7 HOH A 64 764 764 HOH HOH . M 7 HOH A 65 765 765 HOH HOH . M 7 HOH A 66 766 766 HOH HOH . M 7 HOH A 67 767 767 HOH HOH . M 7 HOH A 68 768 768 HOH HOH . M 7 HOH A 69 769 769 HOH HOH . M 7 HOH A 70 770 770 HOH HOH . M 7 HOH A 71 771 771 HOH HOH . M 7 HOH A 72 772 772 HOH HOH . M 7 HOH A 73 773 773 HOH HOH . M 7 HOH A 74 774 774 HOH HOH . M 7 HOH A 75 775 775 HOH HOH . M 7 HOH A 76 776 776 HOH HOH . M 7 HOH A 77 777 777 HOH HOH . M 7 HOH A 78 778 778 HOH HOH . M 7 HOH A 79 779 779 HOH HOH . M 7 HOH A 80 780 780 HOH HOH . M 7 HOH A 81 781 781 HOH HOH . M 7 HOH A 82 782 782 HOH HOH . M 7 HOH A 83 783 783 HOH HOH . M 7 HOH A 84 784 784 HOH HOH . M 7 HOH A 85 785 785 HOH HOH . M 7 HOH A 86 786 786 HOH HOH . M 7 HOH A 87 787 787 HOH HOH . M 7 HOH A 88 788 788 HOH HOH . M 7 HOH A 89 789 789 HOH HOH . M 7 HOH A 90 790 790 HOH HOH . M 7 HOH A 91 791 791 HOH HOH . M 7 HOH A 92 792 792 HOH HOH . M 7 HOH A 93 793 793 HOH HOH . M 7 HOH A 94 794 794 HOH HOH . M 7 HOH A 95 795 795 HOH HOH . M 7 HOH A 96 796 796 HOH HOH . M 7 HOH A 97 797 797 HOH HOH . M 7 HOH A 98 798 798 HOH HOH . M 7 HOH A 99 799 799 HOH HOH . M 7 HOH A 100 800 800 HOH HOH . M 7 HOH A 101 801 801 HOH HOH . M 7 HOH A 102 802 802 HOH HOH . M 7 HOH A 103 803 803 HOH HOH . M 7 HOH A 104 804 804 HOH HOH . M 7 HOH A 105 805 805 HOH HOH . M 7 HOH A 106 806 806 HOH HOH . M 7 HOH A 107 807 807 HOH HOH . M 7 HOH A 108 808 808 HOH HOH . M 7 HOH A 109 809 809 HOH HOH . M 7 HOH A 110 810 810 HOH HOH . M 7 HOH A 111 811 811 HOH HOH . M 7 HOH A 112 812 812 HOH HOH . M 7 HOH A 113 813 813 HOH HOH . M 7 HOH A 114 814 814 HOH HOH . M 7 HOH A 115 815 815 HOH HOH . M 7 HOH A 116 816 816 HOH HOH . M 7 HOH A 117 817 817 HOH HOH . M 7 HOH A 118 818 818 HOH HOH . M 7 HOH A 119 819 819 HOH HOH . M 7 HOH A 120 820 820 HOH HOH . M 7 HOH A 121 821 821 HOH HOH . M 7 HOH A 122 822 822 HOH HOH . M 7 HOH A 123 823 823 HOH HOH . M 7 HOH A 124 824 824 HOH HOH . M 7 HOH A 125 825 825 HOH HOH . M 7 HOH A 126 826 826 HOH HOH . M 7 HOH A 127 827 827 HOH HOH . M 7 HOH A 128 828 828 HOH HOH . M 7 HOH A 129 829 829 HOH HOH . M 7 HOH A 130 830 830 HOH HOH . M 7 HOH A 131 831 831 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 59X . . . B 2 13.19 7.452 12.215 0.9 26.18 ? C4 59X 601 A 1 HETATM 2 C C5 59X . . . B 2 13.375 8.768 11.954 0.9 27.76 ? C5 59X 601 A 1 HETATM 3 C C6 59X . . . B 2 12.299 9.48 11.438 0.9 29.81 ? C6 59X 601 A 1 HETATM 4 N N1 59X . . . B 2 11.132 8.854 11.211 0.9 29.26 ? N1 59X 601 A 1 HETATM 5 N N3 59X . . . B 2 12.029 6.839 12.016 0.9 26.17 ? N3 59X 601 A 1 HETATM 6 F FAC 59X . . . B 2 17.615 6.685 11.844 0.9 31.64 ? FAC 59X 601 A 1 HETATM 7 C CAF 59X . . . B 2 17.809 8.002 11.979 0.9 29.95 ? CAF 59X 601 A 1 HETATM 8 C CAG 59X . . . B 2 16.93 8.448 13.172 0.9 26.66 ? CAG 59X 601 A 1 HETATM 9 C CAS 59X . . . B 2 15.458 8.22 12.745 0.9 25.57 ? CAS 59X 601 A 1 HETATM 10 S SAQ 59X . . . B 2 14.536 6.778 12.891 0.9 24.86 ? SAQ 59X 601 A 1 HETATM 11 C CAE 59X . . . B 2 14.656 9.166 12.247 0.9 26.29 ? CAE 59X 601 A 1 HETATM 12 C C2 59X . . . B 2 10.977 7.521 11.498 0.9 27.43 ? C2 59X 601 A 1 HETATM 13 N NAX 59X . . . B 2 12.255 10.798 11.123 0.9 29.28 ? NAX 59X 601 A 1 HETATM 14 C CAK 59X . . . B 2 11.086 11.31 10.349 0.9 29.46 ? CAK 59X 601 A 1 HETATM 15 C CAI 59X . . . B 2 11.126 12.784 10.136 0.9 30.92 ? CAI 59X 601 A 1 HETATM 16 C CAJ 59X . . . B 2 13.188 11.849 11.727 0.9 30.18 ? CAJ 59X 601 A 1 HETATM 17 C CAH 59X . . . B 2 12.223 12.752 12.508 0.9 31.34 ? CAH 59X 601 A 1 HETATM 18 N NAW 59X . . . B 2 11.364 13.434 11.523 0.9 30.62 ? NAW 59X 601 A 1 HETATM 19 C CAR 59X . . . B 2 10.767 14.602 11.821 0.9 35.65 ? CAR 59X 601 A 1 HETATM 20 S SAP 59X . . . B 2 10.87 15.358 13.31 0.9 34.7 ? SAP 59X 601 A 1 HETATM 21 C CAY 59X . . . B 2 9.913 16.801 12.901 0.9 40.64 ? CAY 59X 601 A 1 HETATM 22 C CAA 59X . . . B 2 8.814 17.067 13.97 0.9 39.5 ? CAA 59X 601 A 1 HETATM 23 C CAB 59X . . . B 2 10.837 18.021 12.774 0.9 42.62 ? CAB 59X 601 A 1 HETATM 24 C CAL 59X . . . B 2 9.357 16.583 11.563 0.9 39.97 ? CAL 59X 601 A 1 HETATM 25 N NAM 59X . . . B 2 9.988 15.316 10.978 0.9 38.67 ? NAM 59X 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #