data_5DE1 # _model_server_result.job_id ByQTMEooTofcO_pqo4OMaw _model_server_result.datetime_utc '2025-01-09 18:45:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5de1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 5DE1 # _exptl.entry_id 5DE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.552 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-1-(4-fluorobenzyl)-N-{3-[(1S)-1-hydroxyethyl]phenyl}-7-methyl-5-(1H-pyrrol-2-ylcarbonyl)-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DE1 _cell.length_a 82.726 _cell.length_b 82.726 _cell.length_c 303.639 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C28 H28 F N5 O3' _chem_comp.formula_weight 501.552 _chem_comp.id 59D _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-1-(4-fluorobenzyl)-N-{3-[(1S)-1-hydroxyethyl]phenyl}-7-methyl-5-(1H-pyrrol-2-ylcarbonyl)-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C04 59D doub 1 n y C05 C06 59D sing 2 n y C04 C03 59D sing 3 n y C01 C02 59D sing 4 n n F C14 59D sing 5 n n C06 C07 59D doub 6 n y C15 C14 59D doub 7 n y C15 C16 59D sing 8 n y C14 C13 59D sing 9 n y C03 C02 59D sing 10 n n C03 C1 59D doub 11 n y C02 O01 59D sing 12 n n C16 C11 59D doub 13 n y C07 C1 59D sing 14 n y C07 N01 59D sing 15 n n C13 C12 59D doub 16 n y N01 C08 59D sing 17 n n C11 C12 59D sing 18 n y C11 C10 59D sing 19 n n O02 C08 59D doub 20 n n C08 C09 59D sing 21 n n N02 C09 59D doub 22 n y N02 N03 59D sing 23 n y C09 C22 59D sing 24 n y C10 N03 59D sing 25 n n N03 C17 59D sing 26 n y C22 C17 59D doub 27 n y C22 C21 59D sing 28 n n C17 C18 59D sing 29 n n C19 C18 59D sing 30 n n C21 N04 59D sing 31 n n C18 C20 59D sing 32 n n N04 C23 59D sing 33 n n N04 C20 59D sing 34 n n C27 N1 59D sing 35 n y C27 C26 59D doub 36 n y N1 C24 59D sing 37 n y C26 C25 59D sing 38 n y C24 C25 59D doub 39 n y C24 C23 59D sing 40 n n C23 O1 59D doub 41 n n N1 H1 59D sing 42 n n C10 H2 59D sing 43 n n C10 H3 59D sing 44 n n C13 H4 59D sing 45 n n C15 H5 59D sing 46 n n C20 H6 59D sing 47 n n C20 H7 59D sing 48 n n C21 H8 59D sing 49 n n C21 H9 59D sing 50 n n C26 H10 59D sing 51 n n C01 H11 59D sing 52 n n C01 H12 59D sing 53 n n C01 H13 59D sing 54 n n C02 H14 59D sing 55 n n O01 H15 59D sing 56 n n C04 H16 59D sing 57 n n C05 H17 59D sing 58 n n C06 H18 59D sing 59 n n N01 H19 59D sing 60 n n C12 H20 59D sing 61 n n C16 H21 59D sing 62 n n C18 H22 59D sing 63 n n C19 H23 59D sing 64 n n C19 H24 59D sing 65 n n C19 H25 59D sing 66 n n C25 H26 59D sing 67 n n C27 H27 59D sing 68 n n C1 H28 59D sing 69 n n # _atom_sites.entry_id 5DE1 _atom_sites.fract_transf_matrix[1][1] 0.012088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 501 1 NAP NAP . D 3 59D A 1 502 2 59D LIG . E 2 NAP B 1 501 2 NAP NAP . F 3 59D B 1 502 1 59D LIG . G 4 HOH A 1 601 109 HOH HOH . G 4 HOH A 2 602 54 HOH HOH . G 4 HOH A 3 603 47 HOH HOH . G 4 HOH A 4 604 165 HOH HOH . G 4 HOH A 5 605 104 HOH HOH . G 4 HOH A 6 606 159 HOH HOH . G 4 HOH A 7 607 158 HOH HOH . G 4 HOH A 8 608 25 HOH HOH . G 4 HOH A 9 609 116 HOH HOH . G 4 HOH A 10 610 56 HOH HOH . G 4 HOH A 11 611 162 HOH HOH . G 4 HOH A 12 612 12 HOH HOH . G 4 HOH A 13 613 161 HOH HOH . G 4 HOH A 14 614 44 HOH HOH . G 4 HOH A 15 615 117 HOH HOH . G 4 HOH A 16 616 166 HOH HOH . G 4 HOH A 17 617 103 HOH HOH . G 4 HOH A 18 618 130 HOH HOH . G 4 HOH A 19 619 53 HOH HOH . G 4 HOH A 20 620 115 HOH HOH . G 4 HOH A 21 621 29 HOH HOH . G 4 HOH A 22 622 95 HOH HOH . G 4 HOH A 23 623 122 HOH HOH . G 4 HOH A 24 624 139 HOH HOH . G 4 HOH A 25 625 52 HOH HOH . G 4 HOH A 26 626 43 HOH HOH . G 4 HOH A 27 627 153 HOH HOH . G 4 HOH A 28 628 26 HOH HOH . G 4 HOH A 29 629 110 HOH HOH . G 4 HOH A 30 630 19 HOH HOH . G 4 HOH A 31 631 123 HOH HOH . G 4 HOH A 32 632 27 HOH HOH . G 4 HOH A 33 633 151 HOH HOH . G 4 HOH A 34 634 79 HOH HOH . G 4 HOH A 35 635 111 HOH HOH . G 4 HOH A 36 636 11 HOH HOH . G 4 HOH A 37 637 48 HOH HOH . G 4 HOH A 38 638 100 HOH HOH . G 4 HOH A 39 639 121 HOH HOH . G 4 HOH A 40 640 84 HOH HOH . G 4 HOH A 41 641 22 HOH HOH . G 4 HOH A 42 642 6 HOH HOH . G 4 HOH A 43 643 108 HOH HOH . G 4 HOH A 44 644 75 HOH HOH . G 4 HOH A 45 645 167 HOH HOH . G 4 HOH A 46 646 89 HOH HOH . G 4 HOH A 47 647 74 HOH HOH . G 4 HOH A 48 648 49 HOH HOH . G 4 HOH A 49 649 46 HOH HOH . G 4 HOH A 50 650 126 HOH HOH . G 4 HOH A 51 651 88 HOH HOH . G 4 HOH A 52 652 152 HOH HOH . G 4 HOH A 53 653 93 HOH HOH . G 4 HOH A 54 654 119 HOH HOH . G 4 HOH A 55 655 91 HOH HOH . G 4 HOH A 56 656 55 HOH HOH . G 4 HOH A 57 657 85 HOH HOH . G 4 HOH A 58 658 112 HOH HOH . G 4 HOH A 59 659 17 HOH HOH . G 4 HOH A 60 660 150 HOH HOH . G 4 HOH A 61 661 149 HOH HOH . G 4 HOH A 62 662 82 HOH HOH . G 4 HOH A 63 663 81 HOH HOH . G 4 HOH A 64 664 87 HOH HOH . G 4 HOH A 65 665 51 HOH HOH . G 4 HOH A 66 666 134 HOH HOH . G 4 HOH A 67 667 147 HOH HOH . G 4 HOH A 68 668 73 HOH HOH . G 4 HOH A 69 669 92 HOH HOH . G 4 HOH A 70 670 76 HOH HOH . G 4 HOH A 71 671 2 HOH HOH . G 4 HOH A 72 672 96 HOH HOH . G 4 HOH A 73 673 102 HOH HOH . G 4 HOH A 74 674 160 HOH HOH . G 4 HOH A 75 675 77 HOH HOH . G 4 HOH A 76 676 90 HOH HOH . G 4 HOH A 77 677 45 HOH HOH . G 4 HOH A 78 678 101 HOH HOH . G 4 HOH A 79 679 66 HOH HOH . G 4 HOH A 80 680 99 HOH HOH . G 4 HOH A 81 681 125 HOH HOH . G 4 HOH A 82 682 124 HOH HOH . G 4 HOH A 83 683 164 HOH HOH . G 4 HOH A 84 684 148 HOH HOH . G 4 HOH A 85 685 83 HOH HOH . G 4 HOH A 86 686 94 HOH HOH . G 4 HOH A 87 687 86 HOH HOH . G 4 HOH A 88 688 146 HOH HOH . H 4 HOH B 1 601 36 HOH HOH . H 4 HOH B 2 602 8 HOH HOH . H 4 HOH B 3 603 113 HOH HOH . H 4 HOH B 4 604 141 HOH HOH . H 4 HOH B 5 605 118 HOH HOH . H 4 HOH B 6 606 28 HOH HOH . H 4 HOH B 7 607 70 HOH HOH . H 4 HOH B 8 608 61 HOH HOH . H 4 HOH B 9 609 59 HOH HOH . H 4 HOH B 10 610 10 HOH HOH . H 4 HOH B 11 611 34 HOH HOH . H 4 HOH B 12 612 128 HOH HOH . H 4 HOH B 13 613 40 HOH HOH . H 4 HOH B 14 614 39 HOH HOH . H 4 HOH B 15 615 16 HOH HOH . H 4 HOH B 16 616 64 HOH HOH . H 4 HOH B 17 617 14 HOH HOH . H 4 HOH B 18 618 68 HOH HOH . H 4 HOH B 19 619 140 HOH HOH . H 4 HOH B 20 620 35 HOH HOH . H 4 HOH B 21 621 106 HOH HOH . H 4 HOH B 22 622 72 HOH HOH . H 4 HOH B 23 623 156 HOH HOH . H 4 HOH B 24 624 120 HOH HOH . H 4 HOH B 25 625 69 HOH HOH . H 4 HOH B 26 626 42 HOH HOH . H 4 HOH B 27 627 21 HOH HOH . H 4 HOH B 28 628 157 HOH HOH . H 4 HOH B 29 629 5 HOH HOH . H 4 HOH B 30 630 4 HOH HOH . H 4 HOH B 31 631 142 HOH HOH . H 4 HOH B 32 632 31 HOH HOH . H 4 HOH B 33 633 38 HOH HOH . H 4 HOH B 34 634 78 HOH HOH . H 4 HOH B 35 635 80 HOH HOH . H 4 HOH B 36 636 129 HOH HOH . H 4 HOH B 37 637 41 HOH HOH . H 4 HOH B 38 638 127 HOH HOH . H 4 HOH B 39 639 71 HOH HOH . H 4 HOH B 40 640 67 HOH HOH . H 4 HOH B 41 641 133 HOH HOH . H 4 HOH B 42 642 135 HOH HOH . H 4 HOH B 43 643 131 HOH HOH . H 4 HOH B 44 644 24 HOH HOH . H 4 HOH B 45 645 7 HOH HOH . H 4 HOH B 46 646 62 HOH HOH . H 4 HOH B 47 647 107 HOH HOH . H 4 HOH B 48 648 33 HOH HOH . H 4 HOH B 49 649 23 HOH HOH . H 4 HOH B 50 650 20 HOH HOH . H 4 HOH B 51 651 143 HOH HOH . H 4 HOH B 52 652 18 HOH HOH . H 4 HOH B 53 653 65 HOH HOH . H 4 HOH B 54 654 144 HOH HOH . H 4 HOH B 55 655 132 HOH HOH . H 4 HOH B 56 656 63 HOH HOH . H 4 HOH B 57 657 60 HOH HOH . H 4 HOH B 58 658 13 HOH HOH . H 4 HOH B 59 659 137 HOH HOH . H 4 HOH B 60 660 37 HOH HOH . H 4 HOH B 61 661 138 HOH HOH . H 4 HOH B 62 662 154 HOH HOH . H 4 HOH B 63 663 1 HOH HOH . H 4 HOH B 64 664 3 HOH HOH . H 4 HOH B 65 665 155 HOH HOH . H 4 HOH B 66 666 136 HOH HOH . H 4 HOH B 67 667 32 HOH HOH . H 4 HOH B 68 668 30 HOH HOH . H 4 HOH B 69 669 163 HOH HOH . H 4 HOH B 70 670 9 HOH HOH . H 4 HOH B 71 671 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 59D . . . F 3 -19.399 16.372 9.509 1 49.77 ? N1 59D 502 B 1 HETATM 2 C C10 59D . . . F 3 -24.991 10.875 6.51 1 57.51 ? C10 59D 502 B 1 HETATM 3 C C13 59D . . . F 3 -27.444 13.146 4.812 1 59.98 ? C13 59D 502 B 1 HETATM 4 C C15 59D . . . F 3 -25.417 13.183 3.552 1 60.2 ? C15 59D 502 B 1 HETATM 5 C C17 59D . . . F 3 -23.093 11.951 7.775 1 53.44 ? C17 59D 502 B 1 HETATM 6 C C20 59D . . . F 3 -22.841 12.957 9.917 1 51.06 ? C20 59D 502 B 1 HETATM 7 C C21 59D . . . F 3 -20.807 12.647 8.504 1 51.54 ? C21 59D 502 B 1 HETATM 8 C C22 59D . . . F 3 -21.735 11.921 7.627 1 53.1 ? C22 59D 502 B 1 HETATM 9 C C24 59D . . . F 3 -19.794 15.083 9.736 1 49.85 ? C24 59D 502 B 1 HETATM 10 C C26 59D . . . F 3 -17.542 15.173 9.634 1 49.64 ? C26 59D 502 B 1 HETATM 11 C C01 59D . . . F 3 -15.041 9.28 2.762 1 64.2 ? C01 59D 502 B 1 HETATM 12 C C02 59D . . . F 3 -15.686 8.616 3.958 1 63.95 ? C02 59D 502 B 1 HETATM 13 O O01 59D . . . F 3 -15.15 7.31 4.1 1 64.3 ? O01 59D 502 B 1 HETATM 14 C C03 59D . . . F 3 -17.159 8.493 3.757 1 64.14 ? C03 59D 502 B 1 HETATM 15 C C04 59D . . . F 3 -17.655 7.855 2.641 1 64.18 ? C04 59D 502 B 1 HETATM 16 C C05 59D . . . F 3 -19.014 7.741 2.457 1 63.8 ? C05 59D 502 B 1 HETATM 17 C C06 59D . . . F 3 -19.881 8.263 3.389 1 63.07 ? C06 59D 502 B 1 HETATM 18 C C07 59D . . . F 3 -19.386 8.903 4.502 1 61.84 ? C07 59D 502 B 1 HETATM 19 N N01 59D . . . F 3 -20.299 9.416 5.435 1 58.69 ? N01 59D 502 B 1 HETATM 20 C C08 59D . . . F 3 -20.25 10.708 5.913 1 56.84 ? C08 59D 502 B 1 HETATM 21 O O02 59D . . . F 3 -19.294 11.471 5.878 1 55.24 ? O02 59D 502 B 1 HETATM 22 C C09 59D . . . F 3 -21.502 11.085 6.506 1 55.41 ? C09 59D 502 B 1 HETATM 23 N N02 59D . . . F 3 -22.65 10.624 5.996 1 55.81 ? N02 59D 502 B 1 HETATM 24 N N03 59D . . . F 3 -23.597 11.164 6.78 1 55.5 ? N03 59D 502 B 1 HETATM 25 C C11 59D . . . F 3 -25.576 11.834 5.523 1 58.78 ? C11 59D 502 B 1 HETATM 26 C C12 59D . . . F 3 -26.874 12.262 5.7 1 59.63 ? C12 59D 502 B 1 HETATM 27 C C14 59D . . . F 3 -26.712 13.602 3.741 1 61.42 ? C14 59D 502 B 1 HETATM 28 F F 59D . . . F 3 -27.26 14.466 2.87 1 62.73 ? F 59D 502 B 1 HETATM 29 C C16 59D . . . F 3 -24.853 12.3 4.444 1 60.17 ? C16 59D 502 B 1 HETATM 30 C C18 59D . . . F 3 -23.833 12.682 8.804 1 51.66 ? C18 59D 502 B 1 HETATM 31 C C19 59D . . . F 3 -24.374 13.983 8.265 1 50.77 ? C19 59D 502 B 1 HETATM 32 N N04 59D . . . F 3 -21.567 13.469 9.436 1 50.69 ? N04 59D 502 B 1 HETATM 33 C C23 59D . . . F 3 -21.177 14.733 9.853 1 49.95 ? C23 59D 502 B 1 HETATM 34 O O1 59D . . . F 3 -21.969 15.545 10.31 1 48.98 ? O1 59D 502 B 1 HETATM 35 C C25 59D . . . F 3 -18.651 14.316 9.822 1 50.09 ? C25 59D 502 B 1 HETATM 36 C C27 59D . . . F 3 -18.038 16.441 9.444 1 49.98 ? C27 59D 502 B 1 HETATM 37 C C1 59D . . . F 3 -18.026 9.016 4.69 1 63.22 ? C1 59D 502 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #