data_5DEJ # _model_server_result.job_id OwmQx089fUsdtNWgtDS4eg _model_server_result.datetime_utc '2024-10-18 16:22:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5DEJ # _exptl.entry_id 5DEJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DEJ _cell.length_a 85.93 _cell.length_b 41.75 _cell.length_c 62.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 57 A GLU 86 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc2 A O ASP 90 A ASP 119 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A OD1 ASP 90 A ASP 119 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc4 C CA CA . A CA 201 1_555 D O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DEJ _atom_sites.fract_transf_matrix[1][1] 0.011637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 201 CA CA . D 3 HOH A 1 301 231 HOH HOH . D 3 HOH A 2 302 67 HOH HOH . D 3 HOH A 3 303 38 HOH HOH . D 3 HOH A 4 304 66 HOH HOH . D 3 HOH A 5 305 215 HOH HOH . D 3 HOH A 6 306 16 HOH HOH . D 3 HOH A 7 307 46 HOH HOH . D 3 HOH A 8 308 219 HOH HOH . D 3 HOH A 9 309 41 HOH HOH . D 3 HOH A 10 310 145 HOH HOH . D 3 HOH A 11 311 99 HOH HOH . D 3 HOH A 12 312 191 HOH HOH . D 3 HOH A 13 313 121 HOH HOH . D 3 HOH A 14 314 201 HOH HOH . D 3 HOH A 15 315 86 HOH HOH . D 3 HOH A 16 316 96 HOH HOH . D 3 HOH A 17 317 28 HOH HOH . D 3 HOH A 18 318 232 HOH HOH . D 3 HOH A 19 319 111 HOH HOH . D 3 HOH A 20 320 78 HOH HOH . D 3 HOH A 21 321 170 HOH HOH . D 3 HOH A 22 322 203 HOH HOH . D 3 HOH A 23 323 120 HOH HOH . D 3 HOH A 24 324 8 HOH HOH . D 3 HOH A 25 325 116 HOH HOH . D 3 HOH A 26 326 74 HOH HOH . D 3 HOH A 27 327 50 HOH HOH . D 3 HOH A 28 328 32 HOH HOH . D 3 HOH A 29 329 39 HOH HOH . D 3 HOH A 30 330 37 HOH HOH . D 3 HOH A 31 331 101 HOH HOH . D 3 HOH A 32 332 162 HOH HOH . D 3 HOH A 33 333 36 HOH HOH . D 3 HOH A 34 334 168 HOH HOH . D 3 HOH A 35 335 68 HOH HOH . D 3 HOH A 36 336 98 HOH HOH . D 3 HOH A 37 337 23 HOH HOH . D 3 HOH A 38 338 7 HOH HOH . D 3 HOH A 39 339 166 HOH HOH . D 3 HOH A 40 340 9 HOH HOH . D 3 HOH A 41 341 144 HOH HOH . D 3 HOH A 42 342 55 HOH HOH . D 3 HOH A 43 343 24 HOH HOH . D 3 HOH A 44 344 87 HOH HOH . D 3 HOH A 45 345 31 HOH HOH . D 3 HOH A 46 346 17 HOH HOH . D 3 HOH A 47 347 61 HOH HOH . D 3 HOH A 48 348 42 HOH HOH . D 3 HOH A 49 349 5 HOH HOH . D 3 HOH A 50 350 40 HOH HOH . D 3 HOH A 51 351 47 HOH HOH . D 3 HOH A 52 352 103 HOH HOH . D 3 HOH A 53 353 142 HOH HOH . D 3 HOH A 54 354 184 HOH HOH . D 3 HOH A 55 355 79 HOH HOH . D 3 HOH A 56 356 230 HOH HOH . D 3 HOH A 57 357 113 HOH HOH . D 3 HOH A 58 358 161 HOH HOH . D 3 HOH A 59 359 118 HOH HOH . D 3 HOH A 60 360 109 HOH HOH . D 3 HOH A 61 361 167 HOH HOH . D 3 HOH A 62 362 141 HOH HOH . D 3 HOH A 63 363 34 HOH HOH . D 3 HOH A 64 364 60 HOH HOH . D 3 HOH A 65 365 70 HOH HOH . D 3 HOH A 66 366 202 HOH HOH . D 3 HOH A 67 367 20 HOH HOH . D 3 HOH A 68 368 13 HOH HOH . D 3 HOH A 69 369 33 HOH HOH . D 3 HOH A 70 370 171 HOH HOH . D 3 HOH A 71 371 189 HOH HOH . D 3 HOH A 72 372 22 HOH HOH . D 3 HOH A 73 373 44 HOH HOH . D 3 HOH A 74 374 160 HOH HOH . D 3 HOH A 75 375 135 HOH HOH . D 3 HOH A 76 376 158 HOH HOH . D 3 HOH A 77 377 134 HOH HOH . D 3 HOH A 78 378 49 HOH HOH . D 3 HOH A 79 379 151 HOH HOH . D 3 HOH A 80 380 48 HOH HOH . D 3 HOH A 81 381 71 HOH HOH . D 3 HOH A 82 382 188 HOH HOH . D 3 HOH A 83 383 75 HOH HOH . D 3 HOH A 84 384 89 HOH HOH . D 3 HOH A 85 385 100 HOH HOH . D 3 HOH A 86 386 165 HOH HOH . D 3 HOH A 87 387 163 HOH HOH . D 3 HOH A 88 388 204 HOH HOH . D 3 HOH A 89 389 186 HOH HOH . D 3 HOH A 90 390 119 HOH HOH . D 3 HOH A 91 391 208 HOH HOH . D 3 HOH A 92 392 140 HOH HOH . D 3 HOH A 93 393 198 HOH HOH . D 3 HOH A 94 394 133 HOH HOH . D 3 HOH A 95 395 216 HOH HOH . D 3 HOH A 96 396 185 HOH HOH . D 3 HOH A 97 397 94 HOH HOH . D 3 HOH A 98 398 95 HOH HOH . D 3 HOH A 99 399 139 HOH HOH . D 3 HOH A 100 400 223 HOH HOH . D 3 HOH A 101 401 187 HOH HOH . D 3 HOH A 102 402 193 HOH HOH . D 3 HOH A 103 403 148 HOH HOH . D 3 HOH A 104 404 209 HOH HOH . D 3 HOH A 105 405 211 HOH HOH . D 3 HOH A 106 406 117 HOH HOH . D 3 HOH A 107 407 226 HOH HOH . D 3 HOH A 108 408 199 HOH HOH . D 3 HOH A 109 409 157 HOH HOH . D 3 HOH A 110 410 143 HOH HOH . E 3 HOH B 1 201 176 HOH HOH . E 3 HOH B 2 202 106 HOH HOH . E 3 HOH B 3 203 224 HOH HOH . E 3 HOH B 4 204 172 HOH HOH . E 3 HOH B 5 205 206 HOH HOH . E 3 HOH B 6 206 1 HOH HOH . E 3 HOH B 7 207 222 HOH HOH . E 3 HOH B 8 208 178 HOH HOH . E 3 HOH B 9 209 173 HOH HOH . E 3 HOH B 10 210 82 HOH HOH . E 3 HOH B 11 211 65 HOH HOH . E 3 HOH B 12 212 126 HOH HOH . E 3 HOH B 13 213 156 HOH HOH . E 3 HOH B 14 214 192 HOH HOH . E 3 HOH B 15 215 72 HOH HOH . E 3 HOH B 16 216 159 HOH HOH . E 3 HOH B 17 217 181 HOH HOH . E 3 HOH B 18 218 149 HOH HOH . E 3 HOH B 19 219 27 HOH HOH . E 3 HOH B 20 220 54 HOH HOH . E 3 HOH B 21 221 112 HOH HOH . E 3 HOH B 22 222 197 HOH HOH . E 3 HOH B 23 223 21 HOH HOH . E 3 HOH B 24 224 19 HOH HOH . E 3 HOH B 25 225 69 HOH HOH . E 3 HOH B 26 226 154 HOH HOH . E 3 HOH B 27 227 6 HOH HOH . E 3 HOH B 28 228 59 HOH HOH . E 3 HOH B 29 229 129 HOH HOH . E 3 HOH B 30 230 194 HOH HOH . E 3 HOH B 31 231 155 HOH HOH . E 3 HOH B 32 232 220 HOH HOH . E 3 HOH B 33 233 2 HOH HOH . E 3 HOH B 34 234 26 HOH HOH . E 3 HOH B 35 235 110 HOH HOH . E 3 HOH B 36 236 3 HOH HOH . E 3 HOH B 37 237 84 HOH HOH . E 3 HOH B 38 238 214 HOH HOH . E 3 HOH B 39 239 122 HOH HOH . E 3 HOH B 40 240 4 HOH HOH . E 3 HOH B 41 241 92 HOH HOH . E 3 HOH B 42 242 29 HOH HOH . E 3 HOH B 43 243 10 HOH HOH . E 3 HOH B 44 244 12 HOH HOH . E 3 HOH B 45 245 115 HOH HOH . E 3 HOH B 46 246 11 HOH HOH . E 3 HOH B 47 247 83 HOH HOH . E 3 HOH B 48 248 57 HOH HOH . E 3 HOH B 49 249 196 HOH HOH . E 3 HOH B 50 250 164 HOH HOH . E 3 HOH B 51 251 207 HOH HOH . E 3 HOH B 52 252 76 HOH HOH . E 3 HOH B 53 253 105 HOH HOH . E 3 HOH B 54 254 43 HOH HOH . E 3 HOH B 55 255 14 HOH HOH . E 3 HOH B 56 256 90 HOH HOH . E 3 HOH B 57 257 123 HOH HOH . E 3 HOH B 58 258 63 HOH HOH . E 3 HOH B 59 259 88 HOH HOH . E 3 HOH B 60 260 35 HOH HOH . E 3 HOH B 61 261 18 HOH HOH . E 3 HOH B 62 262 85 HOH HOH . E 3 HOH B 63 263 64 HOH HOH . E 3 HOH B 64 264 137 HOH HOH . E 3 HOH B 65 265 15 HOH HOH . E 3 HOH B 66 266 62 HOH HOH . E 3 HOH B 67 267 53 HOH HOH . E 3 HOH B 68 268 125 HOH HOH . E 3 HOH B 69 269 51 HOH HOH . E 3 HOH B 70 270 128 HOH HOH . E 3 HOH B 71 271 195 HOH HOH . E 3 HOH B 72 272 81 HOH HOH . E 3 HOH B 73 273 58 HOH HOH . E 3 HOH B 74 274 102 HOH HOH . E 3 HOH B 75 275 30 HOH HOH . E 3 HOH B 76 276 212 HOH HOH . E 3 HOH B 77 277 73 HOH HOH . E 3 HOH B 78 278 104 HOH HOH . E 3 HOH B 79 279 210 HOH HOH . E 3 HOH B 80 280 131 HOH HOH . E 3 HOH B 81 281 80 HOH HOH . E 3 HOH B 82 282 132 HOH HOH . E 3 HOH B 83 283 56 HOH HOH . E 3 HOH B 84 284 25 HOH HOH . E 3 HOH B 85 285 146 HOH HOH . E 3 HOH B 86 286 45 HOH HOH . E 3 HOH B 87 287 93 HOH HOH . E 3 HOH B 88 288 179 HOH HOH . E 3 HOH B 89 289 150 HOH HOH . E 3 HOH B 90 290 130 HOH HOH . E 3 HOH B 91 291 182 HOH HOH . E 3 HOH B 92 292 225 HOH HOH . E 3 HOH B 93 293 217 HOH HOH . E 3 HOH B 94 294 52 HOH HOH . E 3 HOH B 95 295 180 HOH HOH . E 3 HOH B 96 296 228 HOH HOH . E 3 HOH B 97 297 221 HOH HOH . E 3 HOH B 98 298 174 HOH HOH . E 3 HOH B 99 299 177 HOH HOH . E 3 HOH B 100 300 108 HOH HOH . E 3 HOH B 101 301 136 HOH HOH . E 3 HOH B 102 302 97 HOH HOH . E 3 HOH B 103 303 227 HOH HOH . E 3 HOH B 104 304 153 HOH HOH . E 3 HOH B 105 305 169 HOH HOH . E 3 HOH B 106 306 77 HOH HOH . E 3 HOH B 107 307 114 HOH HOH . E 3 HOH B 108 308 200 HOH HOH . E 3 HOH B 109 309 124 HOH HOH . E 3 HOH B 110 310 218 HOH HOH . E 3 HOH B 111 311 205 HOH HOH . E 3 HOH B 112 312 190 HOH HOH . E 3 HOH B 113 313 127 HOH HOH . E 3 HOH B 114 314 107 HOH HOH . E 3 HOH B 115 315 138 HOH HOH . E 3 HOH B 116 316 91 HOH HOH . E 3 HOH B 117 317 183 HOH HOH . E 3 HOH B 118 318 229 HOH HOH . E 3 HOH B 119 319 152 HOH HOH . E 3 HOH B 120 320 147 HOH HOH . E 3 HOH B 121 321 213 HOH HOH . E 3 HOH B 122 322 175 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -18.001 _atom_site.Cartn_y 22.569 _atom_site.Cartn_z -27.341 _atom_site.occupancy 0 _atom_site.B_iso_or_equiv 14.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #