data_5DEL # _model_server_result.job_id aHP0yIKnsnvgF3pfQtFY2Q _model_server_result.datetime_utc '2024-10-18 04:32:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5del # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 5DEL # _exptl.entry_id 5DEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DEL _cell.length_a 85.046 _cell.length_b 85.046 _cell.length_c 137.704 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 272 n n N1 CM1 LDA sing 273 n n N1 CM2 LDA sing 274 n n N1 C1 LDA sing 275 n n CM1 HM11 LDA sing 276 n n CM1 HM12 LDA sing 277 n n CM1 HM13 LDA sing 278 n n CM2 HM21 LDA sing 279 n n CM2 HM22 LDA sing 280 n n CM2 HM23 LDA sing 281 n n C1 C2 LDA sing 282 n n C1 H11 LDA sing 283 n n C1 H12 LDA sing 284 n n C2 C3 LDA sing 285 n n C2 H21 LDA sing 286 n n C2 H22 LDA sing 287 n n C3 C4 LDA sing 288 n n C3 H31 LDA sing 289 n n C3 H32 LDA sing 290 n n C4 C5 LDA sing 291 n n C4 H41 LDA sing 292 n n C4 H42 LDA sing 293 n n C5 C6 LDA sing 294 n n C5 H51 LDA sing 295 n n C5 H52 LDA sing 296 n n C6 C7 LDA sing 297 n n C6 H61 LDA sing 298 n n C6 H62 LDA sing 299 n n C7 C8 LDA sing 300 n n C7 H71 LDA sing 301 n n C7 H72 LDA sing 302 n n C8 C9 LDA sing 303 n n C8 H81 LDA sing 304 n n C8 H82 LDA sing 305 n n C9 C10 LDA sing 306 n n C9 H91 LDA sing 307 n n C9 H92 LDA sing 308 n n C10 C11 LDA sing 309 n n C10 H101 LDA sing 310 n n C10 H102 LDA sing 311 n n C11 C12 LDA sing 312 n n C11 H111 LDA sing 313 n n C11 H112 LDA sing 314 n n C12 H121 LDA sing 315 n n C12 H122 LDA sing 316 n n C12 H123 LDA sing 317 n n # _atom_sites.entry_id 5DEL _atom_sites.fract_transf_matrix[1][1] 0.011758 _atom_sites.fract_transf_matrix[1][2] 0.006789 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 601 1002 FMN FMN . C 3 ORO A 1 602 1003 ORO ORO . D 4 D59 A 1 603 1004 D59 D59 . E 5 GOL A 1 604 1005 GOL GOL . F 6 LDA A 1 605 1006 LDA LDA . G 5 GOL A 1 606 1007 GOL GOL . H 7 HOH A 1 701 154 HOH HOH . H 7 HOH A 2 702 164 HOH HOH . H 7 HOH A 3 703 90 HOH HOH . H 7 HOH A 4 704 74 HOH HOH . H 7 HOH A 5 705 48 HOH HOH . H 7 HOH A 6 706 19 HOH HOH . H 7 HOH A 7 707 60 HOH HOH . H 7 HOH A 8 708 61 HOH HOH . H 7 HOH A 9 709 85 HOH HOH . H 7 HOH A 10 710 9 HOH HOH . H 7 HOH A 11 711 54 HOH HOH . H 7 HOH A 12 712 141 HOH HOH . H 7 HOH A 13 713 137 HOH HOH . H 7 HOH A 14 714 15 HOH HOH . H 7 HOH A 15 715 37 HOH HOH . H 7 HOH A 16 716 94 HOH HOH . H 7 HOH A 17 717 130 HOH HOH . H 7 HOH A 18 718 73 HOH HOH . H 7 HOH A 19 719 72 HOH HOH . H 7 HOH A 20 720 11 HOH HOH . H 7 HOH A 21 721 62 HOH HOH . H 7 HOH A 22 722 31 HOH HOH . H 7 HOH A 23 723 12 HOH HOH . H 7 HOH A 24 724 126 HOH HOH . H 7 HOH A 25 725 41 HOH HOH . H 7 HOH A 26 726 69 HOH HOH . H 7 HOH A 27 727 63 HOH HOH . H 7 HOH A 28 728 17 HOH HOH . H 7 HOH A 29 729 171 HOH HOH . H 7 HOH A 30 730 151 HOH HOH . H 7 HOH A 31 731 14 HOH HOH . H 7 HOH A 32 732 25 HOH HOH . H 7 HOH A 33 733 10 HOH HOH . H 7 HOH A 34 734 47 HOH HOH . H 7 HOH A 35 735 93 HOH HOH . H 7 HOH A 36 736 39 HOH HOH . H 7 HOH A 37 737 5 HOH HOH . H 7 HOH A 38 738 89 HOH HOH . H 7 HOH A 39 739 78 HOH HOH . H 7 HOH A 40 740 179 HOH HOH . H 7 HOH A 41 741 33 HOH HOH . H 7 HOH A 42 742 6 HOH HOH . H 7 HOH A 43 743 142 HOH HOH . H 7 HOH A 44 744 20 HOH HOH . H 7 HOH A 45 745 108 HOH HOH . H 7 HOH A 46 746 36 HOH HOH . H 7 HOH A 47 747 40 HOH HOH . H 7 HOH A 48 748 30 HOH HOH . H 7 HOH A 49 749 32 HOH HOH . H 7 HOH A 50 750 8 HOH HOH . H 7 HOH A 51 751 49 HOH HOH . H 7 HOH A 52 752 42 HOH HOH . H 7 HOH A 53 753 105 HOH HOH . H 7 HOH A 54 754 116 HOH HOH . H 7 HOH A 55 755 57 HOH HOH . H 7 HOH A 56 756 2 HOH HOH . H 7 HOH A 57 757 1 HOH HOH . H 7 HOH A 58 758 16 HOH HOH . H 7 HOH A 59 759 86 HOH HOH . H 7 HOH A 60 760 26 HOH HOH . H 7 HOH A 61 761 27 HOH HOH . H 7 HOH A 62 762 3 HOH HOH . H 7 HOH A 63 763 82 HOH HOH . H 7 HOH A 64 764 76 HOH HOH . H 7 HOH A 65 765 75 HOH HOH . H 7 HOH A 66 766 101 HOH HOH . H 7 HOH A 67 767 103 HOH HOH . H 7 HOH A 68 768 77 HOH HOH . H 7 HOH A 69 769 95 HOH HOH . H 7 HOH A 70 770 112 HOH HOH . H 7 HOH A 71 771 160 HOH HOH . H 7 HOH A 72 772 34 HOH HOH . H 7 HOH A 73 773 13 HOH HOH . H 7 HOH A 74 774 188 HOH HOH . H 7 HOH A 75 775 87 HOH HOH . H 7 HOH A 76 776 139 HOH HOH . H 7 HOH A 77 777 51 HOH HOH . H 7 HOH A 78 778 56 HOH HOH . H 7 HOH A 79 779 43 HOH HOH . H 7 HOH A 80 780 187 HOH HOH . H 7 HOH A 81 781 177 HOH HOH . H 7 HOH A 82 782 46 HOH HOH . H 7 HOH A 83 783 55 HOH HOH . H 7 HOH A 84 784 91 HOH HOH . H 7 HOH A 85 785 38 HOH HOH . H 7 HOH A 86 786 110 HOH HOH . H 7 HOH A 87 787 80 HOH HOH . H 7 HOH A 88 788 166 HOH HOH . H 7 HOH A 89 789 44 HOH HOH . H 7 HOH A 90 790 64 HOH HOH . H 7 HOH A 91 791 152 HOH HOH . H 7 HOH A 92 792 109 HOH HOH . H 7 HOH A 93 793 132 HOH HOH . H 7 HOH A 94 794 92 HOH HOH . H 7 HOH A 95 795 67 HOH HOH . H 7 HOH A 96 796 190 HOH HOH . H 7 HOH A 97 797 22 HOH HOH . H 7 HOH A 98 798 99 HOH HOH . H 7 HOH A 99 799 88 HOH HOH . H 7 HOH A 100 800 131 HOH HOH . H 7 HOH A 101 801 24 HOH HOH . H 7 HOH A 102 802 45 HOH HOH . H 7 HOH A 103 803 96 HOH HOH . H 7 HOH A 104 804 150 HOH HOH . H 7 HOH A 105 805 136 HOH HOH . H 7 HOH A 106 806 168 HOH HOH . H 7 HOH A 107 807 58 HOH HOH . H 7 HOH A 108 808 65 HOH HOH . H 7 HOH A 109 809 79 HOH HOH . H 7 HOH A 110 810 70 HOH HOH . H 7 HOH A 111 811 123 HOH HOH . H 7 HOH A 112 812 107 HOH HOH . H 7 HOH A 113 813 176 HOH HOH . H 7 HOH A 114 814 135 HOH HOH . H 7 HOH A 115 815 106 HOH HOH . H 7 HOH A 116 816 165 HOH HOH . H 7 HOH A 117 817 113 HOH HOH . H 7 HOH A 118 818 125 HOH HOH . H 7 HOH A 119 819 52 HOH HOH . H 7 HOH A 120 820 50 HOH HOH . H 7 HOH A 121 821 155 HOH HOH . H 7 HOH A 122 822 163 HOH HOH . H 7 HOH A 123 823 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . F 6 22.227 38.923 -10.081 1 76.24 ? N1 LDA 605 A 1 HETATM 2 O O1 LDA . . . F 6 21.033 38.903 -9.723 1 77.79 ? O1 LDA 605 A 1 HETATM 3 C CM1 LDA . . . F 6 22.664 40.309 -9.838 1 76.96 ? CM1 LDA 605 A 1 HETATM 4 C CM2 LDA . . . F 6 22.935 37.929 -9.246 1 77.68 ? CM2 LDA 605 A 1 HETATM 5 C C1 LDA . . . F 6 22.23 38.604 -11.504 1 72.43 ? C1 LDA 605 A 1 HETATM 6 C C2 LDA . . . F 6 23.615 38.46 -12.129 1 69.05 ? C2 LDA 605 A 1 HETATM 7 C C3 LDA . . . F 6 23.431 37.913 -13.546 1 68.1 ? C3 LDA 605 A 1 HETATM 8 C C4 LDA . . . F 6 24.75 37.751 -14.3 1 66.82 ? C4 LDA 605 A 1 HETATM 9 C C5 LDA . . . F 6 24.562 36.971 -15.602 1 64.31 ? C5 LDA 605 A 1 HETATM 10 C C6 LDA . . . F 6 25.279 37.622 -16.786 1 64.81 ? C6 LDA 605 A 1 HETATM 11 C C7 LDA . . . F 6 25.923 36.612 -17.734 1 66.38 ? C7 LDA 605 A 1 HETATM 12 C C8 LDA . . . F 6 27.186 37.177 -18.382 1 68.51 ? C8 LDA 605 A 1 HETATM 13 C C9 LDA . . . F 6 26.894 38.39 -19.259 1 71.23 ? C9 LDA 605 A 1 HETATM 14 C C10 LDA . . . F 6 27.421 38.179 -20.676 1 72.76 ? C10 LDA 605 A 1 HETATM 15 C C11 LDA . . . F 6 26.653 37.087 -21.421 1 73.02 ? C11 LDA 605 A 1 HETATM 16 C C12 LDA . . . F 6 25.628 37.638 -22.408 1 72.85 ? C12 LDA 605 A 1 HETATM 17 H HM11 LDA . . . F 6 21.834 40.885 -9.429 1 92.36 ? HM11 LDA 605 A 1 HETATM 18 H HM12 LDA . . . F 6 22.99 40.757 -10.777 1 92.36 ? HM12 LDA 605 A 1 HETATM 19 H HM13 LDA . . . F 6 23.492 40.31 -9.129 1 92.36 ? HM13 LDA 605 A 1 HETATM 20 H HM21 LDA . . . F 6 22.228 37.462 -8.56 1 93.22 ? HM21 LDA 605 A 1 HETATM 21 H HM22 LDA . . . F 6 23.72 38.427 -8.677 1 93.22 ? HM22 LDA 605 A 1 HETATM 22 H HM23 LDA . . . F 6 23.378 37.166 -9.887 1 93.22 ? HM23 LDA 605 A 1 HETATM 23 H H11 LDA . . . F 6 21.683 37.674 -11.653 1 86.92 ? H11 LDA 605 A 1 HETATM 24 H H12 LDA . . . F 6 21.688 39.385 -12.036 1 86.92 ? H12 LDA 605 A 1 HETATM 25 H H21 LDA . . . F 6 24.114 39.429 -12.163 1 82.86 ? H21 LDA 605 A 1 HETATM 26 H H22 LDA . . . F 6 24.224 37.776 -11.539 1 82.86 ? H22 LDA 605 A 1 HETATM 27 H H31 LDA . . . F 6 22.931 36.946 -13.492 1 81.72 ? H31 LDA 605 A 1 HETATM 28 H H32 LDA . . . F 6 22.782 38.587 -14.106 1 81.72 ? H32 LDA 605 A 1 HETATM 29 H H41 LDA . . . F 6 25.16 38.735 -14.525 1 80.19 ? H41 LDA 605 A 1 HETATM 30 H H42 LDA . . . F 6 25.466 37.229 -13.666 1 80.19 ? H42 LDA 605 A 1 HETATM 31 H H51 LDA . . . F 6 24.94 35.957 -15.468 1 77.18 ? H51 LDA 605 A 1 HETATM 32 H H52 LDA . . . F 6 23.497 36.898 -15.825 1 77.18 ? H52 LDA 605 A 1 HETATM 33 H H61 LDA . . . F 6 26.05 38.294 -16.407 1 77.78 ? H61 LDA 605 A 1 HETATM 34 H H62 LDA . . . F 6 24.564 38.227 -17.344 1 77.78 ? H62 LDA 605 A 1 HETATM 35 H H71 LDA . . . F 6 25.209 36.341 -18.512 1 79.66 ? H71 LDA 605 A 1 HETATM 36 H H72 LDA . . . F 6 26.174 35.707 -17.182 1 79.66 ? H72 LDA 605 A 1 HETATM 37 H H81 LDA . . . F 6 27.656 36.402 -18.987 1 82.22 ? H81 LDA 605 A 1 HETATM 38 H H82 LDA . . . F 6 27.893 37.461 -17.602 1 82.22 ? H82 LDA 605 A 1 HETATM 39 H H91 LDA . . . F 6 25.819 38.564 -19.294 1 85.48 ? H91 LDA 605 A 1 HETATM 40 H H92 LDA . . . F 6 27.363 39.274 -18.825 1 85.48 ? H92 LDA 605 A 1 HETATM 41 H H101 LDA . . . F 6 27.344 39.114 -21.23 1 87.32 ? H101 LDA 605 A 1 HETATM 42 H H102 LDA . . . F 6 28.476 37.908 -20.629 1 87.32 ? H102 LDA 605 A 1 HETATM 43 H H111 LDA . . . F 6 27.363 36.459 -21.959 1 87.63 ? H111 LDA 605 A 1 HETATM 44 H H112 LDA . . . F 6 26.142 36.454 -20.695 1 87.63 ? H112 LDA 605 A 1 HETATM 45 H H121 LDA . . . F 6 25.649 38.727 -22.383 1 87.42 ? H121 LDA 605 A 1 HETATM 46 H H122 LDA . . . F 6 24.633 37.287 -22.132 1 87.42 ? H122 LDA 605 A 1 HETATM 47 H H123 LDA . . . F 6 25.869 37.292 -23.413 1 87.42 ? H123 LDA 605 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #