data_5DEX
#
_model_server_result.job_id            5d7VCQ0xwv2UQKfbDIbWKg 
_model_server_result.datetime_utc      '2024-11-08 05:47:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dex 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    5DEX 
#
_exptl.entry_id    5DEX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DEX 
_cell.length_a            54.629 
_cell.length_b            87.302 
_cell.length_c            122.572 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DEX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf4 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 154 n n 
N H GLY sing 155 n n 
N H2 GLY sing 156 n n 
CA C GLY sing 157 n n 
CA HA2 GLY sing 158 n n 
CA HA3 GLY sing 159 n n 
C O GLY doub 160 n n 
C OXT GLY sing 161 n n 
OXT HXT GLY sing 162 n n 
#
_atom_sites.entry_id                     5DEX 
_atom_sites.fract_transf_matrix[1][1]    0.018305 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011454 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008158 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GLY A 1 1001 1001 GLY GLY . 
D 4 5E0 B 1 301 286 5E0 FR1 . 
E 5 HOH A 1 1101 1033 HOH HOH . 
E 5 HOH A 2 1102 1044 HOH HOH . 
E 5 HOH A 3 1103 1021 HOH HOH . 
E 5 HOH A 4 1104 1030 HOH HOH . 
E 5 HOH A 5 1105 1048 HOH HOH . 
E 5 HOH A 6 1106 1005 HOH HOH . 
E 5 HOH A 7 1107 1077 HOH HOH . 
E 5 HOH A 8 1108 1019 HOH HOH . 
E 5 HOH A 9 1109 1058 HOH HOH . 
E 5 HOH A 10 1110 1009 HOH HOH . 
E 5 HOH A 11 1111 1014 HOH HOH . 
E 5 HOH A 12 1112 1059 HOH HOH . 
E 5 HOH A 13 1113 1051 HOH HOH . 
E 5 HOH A 14 1114 1022 HOH HOH . 
E 5 HOH A 15 1115 1070 HOH HOH . 
E 5 HOH A 16 1116 1026 HOH HOH . 
E 5 HOH A 17 1117 1069 HOH HOH . 
E 5 HOH A 18 1118 1066 HOH HOH . 
E 5 HOH A 19 1119 1041 HOH HOH . 
E 5 HOH A 20 1120 1008 HOH HOH . 
E 5 HOH A 21 1121 1052 HOH HOH . 
E 5 HOH A 22 1122 1007 HOH HOH . 
E 5 HOH A 23 1123 1025 HOH HOH . 
E 5 HOH A 24 1124 1062 HOH HOH . 
E 5 HOH A 25 1125 1013 HOH HOH . 
E 5 HOH A 26 1126 1078 HOH HOH . 
E 5 HOH A 27 1127 1031 HOH HOH . 
E 5 HOH A 28 1128 1045 HOH HOH . 
E 5 HOH A 29 1129 1064 HOH HOH . 
E 5 HOH A 30 1130 1065 HOH HOH . 
E 5 HOH A 31 1131 1040 HOH HOH . 
E 5 HOH A 32 1132 1003 HOH HOH . 
E 5 HOH A 33 1133 1063 HOH HOH . 
E 5 HOH A 34 1134 1015 HOH HOH . 
E 5 HOH A 35 1135 1037 HOH HOH . 
E 5 HOH A 36 1136 1024 HOH HOH . 
E 5 HOH A 37 1137 1043 HOH HOH . 
E 5 HOH A 38 1138 1028 HOH HOH . 
E 5 HOH A 39 1139 1057 HOH HOH . 
E 5 HOH A 40 1140 1054 HOH HOH . 
E 5 HOH A 41 1141 1035 HOH HOH . 
E 5 HOH A 42 1142 1067 HOH HOH . 
E 5 HOH A 43 1143 1016 HOH HOH . 
E 5 HOH A 44 1144 1036 HOH HOH . 
E 5 HOH A 45 1145 1049 HOH HOH . 
E 5 HOH A 46 1146 1020 HOH HOH . 
E 5 HOH A 47 1147 1012 HOH HOH . 
E 5 HOH A 48 1148 1068 HOH HOH . 
E 5 HOH A 49 1149 1010 HOH HOH . 
E 5 HOH A 50 1150 1038 HOH HOH . 
E 5 HOH A 51 1151 1053 HOH HOH . 
E 5 HOH A 52 1152 1017 HOH HOH . 
E 5 HOH A 53 1153 1074 HOH HOH . 
E 5 HOH A 54 1154 1004 HOH HOH . 
E 5 HOH A 55 1155 1046 HOH HOH . 
E 5 HOH A 56 1156 1027 HOH HOH . 
E 5 HOH A 57 1157 1042 HOH HOH . 
E 5 HOH A 58 1158 1071 HOH HOH . 
E 5 HOH A 59 1159 1023 HOH HOH . 
E 5 HOH A 60 1160 1029 HOH HOH . 
E 5 HOH A 61 1161 1055 HOH HOH . 
E 5 HOH A 62 1162 1061 HOH HOH . 
E 5 HOH A 63 1163 1018 HOH HOH . 
E 5 HOH A 64 1164 1047 HOH HOH . 
E 5 HOH A 65 1165 1056 HOH HOH . 
E 5 HOH A 66 1166 1075 HOH HOH . 
E 5 HOH A 67 1167 1079 HOH HOH . 
E 5 HOH A 68 1168 1050 HOH HOH . 
E 5 HOH A 69 1169 1039 HOH HOH . 
E 5 HOH A 70 1170 1060 HOH HOH . 
E 5 HOH A 71 1171 1073 HOH HOH . 
E 5 HOH A 72 1172 1032 HOH HOH . 
E 5 HOH A 73 1173 1076 HOH HOH . 
E 5 HOH A 74 1174 1080 HOH HOH . 
E 5 HOH A 75 1175 1011 HOH HOH . 
E 5 HOH A 76 1176 1072 HOH HOH . 
E 5 HOH A 77 1177 1034 HOH HOH . 
F 5 HOH B 1 401 328 HOH HOH . 
F 5 HOH B 2 402 351 HOH HOH . 
F 5 HOH B 3 403 341 HOH HOH . 
F 5 HOH B 4 404 342 HOH HOH . 
F 5 HOH B 5 405 309 HOH HOH . 
F 5 HOH B 6 406 354 HOH HOH . 
F 5 HOH B 7 407 324 HOH HOH . 
F 5 HOH B 8 408 303 HOH HOH . 
F 5 HOH B 9 409 315 HOH HOH . 
F 5 HOH B 10 410 291 HOH HOH . 
F 5 HOH B 11 411 329 HOH HOH . 
F 5 HOH B 12 412 304 HOH HOH . 
F 5 HOH B 13 413 311 HOH HOH . 
F 5 HOH B 14 414 322 HOH HOH . 
F 5 HOH B 15 415 298 HOH HOH . 
F 5 HOH B 16 416 332 HOH HOH . 
F 5 HOH B 17 417 335 HOH HOH . 
F 5 HOH B 18 418 350 HOH HOH . 
F 5 HOH B 19 419 313 HOH HOH . 
F 5 HOH B 20 420 299 HOH HOH . 
F 5 HOH B 21 421 302 HOH HOH . 
F 5 HOH B 22 422 326 HOH HOH . 
F 5 HOH B 23 423 346 HOH HOH . 
F 5 HOH B 24 424 297 HOH HOH . 
F 5 HOH B 25 425 314 HOH HOH . 
F 5 HOH B 26 426 292 HOH HOH . 
F 5 HOH B 27 427 288 HOH HOH . 
F 5 HOH B 28 428 349 HOH HOH . 
F 5 HOH B 29 429 290 HOH HOH . 
F 5 HOH B 30 430 343 HOH HOH . 
F 5 HOH B 31 431 308 HOH HOH . 
F 5 HOH B 32 432 295 HOH HOH . 
F 5 HOH B 33 433 340 HOH HOH . 
F 5 HOH B 34 434 301 HOH HOH . 
F 5 HOH B 35 435 330 HOH HOH . 
F 5 HOH B 36 436 333 HOH HOH . 
F 5 HOH B 37 437 310 HOH HOH . 
F 5 HOH B 38 438 336 HOH HOH . 
F 5 HOH B 39 439 318 HOH HOH . 
F 5 HOH B 40 440 334 HOH HOH . 
F 5 HOH B 41 441 331 HOH HOH . 
F 5 HOH B 42 442 344 HOH HOH . 
F 5 HOH B 43 443 307 HOH HOH . 
F 5 HOH B 44 444 319 HOH HOH . 
F 5 HOH B 45 445 289 HOH HOH . 
F 5 HOH B 46 446 305 HOH HOH . 
F 5 HOH B 47 447 293 HOH HOH . 
F 5 HOH B 48 448 355 HOH HOH . 
F 5 HOH B 49 449 348 HOH HOH . 
F 5 HOH B 50 450 287 HOH HOH . 
F 5 HOH B 51 451 347 HOH HOH . 
F 5 HOH B 52 452 320 HOH HOH . 
F 5 HOH B 53 453 312 HOH HOH . 
F 5 HOH B 54 454 321 HOH HOH . 
F 5 HOH B 55 455 353 HOH HOH . 
F 5 HOH B 56 456 325 HOH HOH . 
F 5 HOH B 57 457 1006 HOH HOH . 
F 5 HOH B 58 458 316 HOH HOH . 
F 5 HOH B 59 459 339 HOH HOH . 
F 5 HOH B 60 460 300 HOH HOH . 
F 5 HOH B 61 461 338 HOH HOH . 
F 5 HOH B 62 462 345 HOH HOH . 
F 5 HOH B 63 463 352 HOH HOH . 
F 5 HOH B 64 464 327 HOH HOH . 
F 5 HOH B 65 465 337 HOH HOH . 
F 5 HOH B 66 466 296 HOH HOH . 
F 5 HOH B 67 467 317 HOH HOH . 
F 5 HOH B 68 468 294 HOH HOH . 
F 5 HOH B 69 469 306 HOH HOH . 
F 5 HOH B 70 470 356 HOH HOH . 
F 5 HOH B 71 471 1002 HOH HOH . 
F 5 HOH B 72 472 323 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . C 3 -10.069 12.443 -37.251 1 15.37 ? N GLY 1001 A 1 
HETATM 2 C CA GLY . . . C 3 -9.995 11.564 -38.39 1 15.85 ? CA GLY 1001 A 1 
HETATM 3 C C GLY . . . C 3 -9.557 10.172 -38.027 1 17.02 ? C GLY 1001 A 1 
HETATM 4 O O GLY . . . C 3 -9.695 9.214 -38.782 1 20.47 ? O GLY 1001 A 1 
HETATM 5 O OXT GLY . . . C 3 -9.051 9.942 -36.952 1 17.58 ? OXT GLY 1001 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#