data_5DF9
#
_model_server_result.job_id            2sSMUbtBGZQcfUcIODRIhQ 
_model_server_result.datetime_utc      '2024-11-25 11:15:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5df9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    5DF9 
#
_exptl.entry_id    5DF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              549.554 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,5R)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-(4-hydroxyphenyl)acetyl]amino}methyl]-5-methyl-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.42 
_cell.angle_gamma         90 
_cell.entry_id            5DF9 
_cell.length_a            176.884 
_cell.length_b            41.264 
_cell.length_c            87.786 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H27 N5 O9 S' 
_chem_comp.formula_weight    549.554 
_chem_comp.id                59J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,5R)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-(4-hydroxyphenyl)acetyl]amino}methyl]-5-methyl-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 N05 59J sing 1 n n 
C19 C23 59J sing 2 n n 
O07 C17 59J doub 3 n n 
N05 C17 59J sing 4 n n 
N05 C13 59J sing 5 n n 
C17 C16 59J sing 6 n n 
C13 C12 59J sing 7 n n 
C12 N04 59J sing 8 n n 
O C22 59J sing 9 n n 
C20 C22 59J doub 10 n y 
C20 C14 59J sing 11 n y 
C16 N04 59J sing 12 n n 
C16 O06 59J doub 13 n n 
N04 C11 59J sing 14 n n 
C22 C21 59J sing 15 n y 
C14 C10 59J doub 16 n y 
C11 O05 59J doub 17 n n 
C11 N03 59J sing 18 n n 
C21 C15 59J doub 19 n y 
N03 CA 59J sing 20 n n 
C10 C15 59J sing 21 n y 
C10 CA 59J sing 22 n n 
CA C06 59J sing 23 n n 
O02 C06 59J doub 24 n n 
C06 N02 59J sing 25 n n 
N02 C02 59J sing 26 n n 
S01 C05 59J sing 27 n n 
S01 C01 59J sing 28 n n 
C05 C04 59J sing 29 n n 
C02 C01 59J sing 30 n n 
C02 C03 59J sing 31 n n 
C01 N01 59J sing 32 n n 
O01 C03 59J doub 33 n n 
C03 O08 59J sing 34 n n 
C04 C07 59J sing 35 n n 
C04 C08 59J sing 36 n n 
N01 C07 59J doub 37 n n 
C07 C09 59J sing 38 n n 
C09 O04 59J doub 39 n n 
C09 O03 59J sing 40 n n 
C12 H1 59J sing 41 n n 
C12 H2 59J sing 42 n n 
C13 H3 59J sing 43 n n 
C13 H4 59J sing 44 n n 
C14 H5 59J sing 45 n n 
C15 H6 59J sing 46 n n 
C19 H7 59J sing 47 n n 
C19 H8 59J sing 48 n n 
C20 H9 59J sing 49 n n 
C21 H10 59J sing 50 n n 
C23 H11 59J sing 51 n n 
C23 H12 59J sing 52 n n 
C23 H13 59J sing 53 n n 
O03 H14 59J sing 54 n n 
O H15 59J sing 55 n n 
N02 H16 59J sing 56 n n 
N03 H17 59J sing 57 n n 
C01 H18 59J sing 58 n n 
C02 H19 59J sing 59 n n 
C04 H20 59J sing 60 n n 
C05 H21 59J sing 61 n n 
C05 H22 59J sing 62 n n 
C08 H23 59J sing 63 n n 
C08 H24 59J sing 64 n n 
C08 H25 59J sing 65 n n 
CA H26 59J sing 66 n n 
O08 H27 59J sing 67 n n 
#
_atom_sites.entry_id                     5DF9 
_atom_sites.fract_transf_matrix[1][1]    0.005653 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002933 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024234 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 601 2 SO4 SO4 . 
C 2 SO4 A 1 602 3 SO4 SO4 . 
D 3 59J A 1 603 1 59J CEH . 
E 4 GOL A 1 604 1 GOL GOL . 
F 5 HOH A 1 701 12 HOH HOH . 
F 5 HOH A 2 702 10 HOH HOH . 
F 5 HOH A 3 703 16 HOH HOH . 
F 5 HOH A 4 704 6 HOH HOH . 
F 5 HOH A 5 705 1 HOH HOH . 
F 5 HOH A 6 706 18 HOH HOH . 
F 5 HOH A 7 707 7 HOH HOH . 
F 5 HOH A 8 708 14 HOH HOH . 
F 5 HOH A 9 709 13 HOH HOH . 
F 5 HOH A 10 710 8 HOH HOH . 
F 5 HOH A 11 711 19 HOH HOH . 
F 5 HOH A 12 712 5 HOH HOH . 
F 5 HOH A 13 713 17 HOH HOH . 
F 5 HOH A 14 714 4 HOH HOH . 
F 5 HOH A 15 715 20 HOH HOH . 
F 5 HOH A 16 716 15 HOH HOH . 
F 5 HOH A 17 717 9 HOH HOH . 
F 5 HOH A 18 718 11 HOH HOH . 
F 5 HOH A 19 719 3 HOH HOH . 
F 5 HOH A 20 720 21 HOH HOH . 
F 5 HOH A 21 721 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 59J . . . D 3 -41.823 -9.862 -40.153 1 70.41 ? C10 59J 603 A 1 
HETATM 2 C C11 59J . . . D 3 -42.359 -6.713 -40.822 1 66.16 ? C11 59J 603 A 1 
HETATM 3 C C12 59J . . . D 3 -42.144 -4.658 -42.3 1 76.07 ? C12 59J 603 A 1 
HETATM 4 C C13 59J . . . D 3 -42.856 -3.284 -42.438 1 77.89 ? C13 59J 603 A 1 
HETATM 5 C C14 59J . . . D 3 -42.322 -10.294 -41.512 1 77.94 ? C14 59J 603 A 1 
HETATM 6 C C15 59J . . . D 3 -40.719 -10.449 -39.612 1 75.4 ? C15 59J 603 A 1 
HETATM 7 C C16 59J . . . D 3 -44.399 -5.597 -41.776 1 75.48 ? C16 59J 603 A 1 
HETATM 8 C C17 59J . . . D 3 -45.002 -4.547 -42.584 1 73.21 ? C17 59J 603 A 1 
HETATM 9 C C19 59J . . . D 3 -44.831 -2.335 -43.73 1 75.01 ? C19 59J 603 A 1 
HETATM 10 C C20 59J . . . D 3 -41.65 -11.29 -42.201 1 80.22 ? C20 59J 603 A 1 
HETATM 11 C C21 59J . . . D 3 -39.994 -11.529 -40.364 1 77.34 ? C21 59J 603 A 1 
HETATM 12 C C22 59J . . . D 3 -40.439 -11.932 -41.606 1 74.03 ? C22 59J 603 A 1 
HETATM 13 C C23 59J . . . D 3 -45.705 -1.448 -42.87 1 73.17 ? C23 59J 603 A 1 
HETATM 14 S S01 59J . . . D 3 -43.364 -13.215 -37.015 1 117.27 ? S01 59J 603 A 1 
HETATM 15 O O01 59J . . . D 3 -43.653 -8.458 -35.19 1 107.78 ? O01 59J 603 A 1 
HETATM 16 O O02 59J . . . D 3 -44.694 -9.117 -38.466 1 58.73 ? O02 59J 603 A 1 
HETATM 17 O O03 59J . . . D 3 -41 -12.636 -32.39 1 78.79 ? O03 59J 603 A 1 
HETATM 18 O O04 59J . . . D 3 -41 -14.807 -32.591 1 80.58 ? O04 59J 603 A 1 
HETATM 19 O O05 59J . . . D 3 -41.144 -6.743 -40.714 1 63.54 ? O05 59J 603 A 1 
HETATM 20 O O06 59J . . . D 3 -45.114 -6.423 -41.226 1 81.29 ? O06 59J 603 A 1 
HETATM 21 O O07 59J . . . D 3 -46.163 -4.663 -42.974 1 79.55 ? O07 59J 603 A 1 
HETATM 22 O O 59J . . . D 3 -39.757 -12.934 -42.293 1 79.2 ? O 59J 603 A 1 
HETATM 23 N N01 59J . . . D 3 -42.625 -12.202 -34.714 1 108.63 ? N01 59J 603 A 1 
HETATM 24 N N02 59J . . . D 3 -43.016 -10.11 -37.189 1 88 ? N02 59J 603 A 1 
HETATM 25 N N03 59J . . . D 3 -43.161 -7.715 -40.159 1 69.79 ? N03 59J 603 A 1 
HETATM 26 N N04 59J . . . D 3 -42.99 -5.661 -41.628 1 70.78 ? N04 59J 603 A 1 
HETATM 27 N N05 59J . . . D 3 -44.246 -3.41 -42.912 1 74.58 ? N05 59J 603 A 1 
HETATM 28 C C01 59J . . . D 3 -43.713 -12.054 -35.717 1 108.48 ? C01 59J 603 A 1 
HETATM 29 C C02 59J . . . D 3 -43.943 -10.626 -36.181 1 94.7 ? C02 59J 603 A 1 
HETATM 30 C C03 59J . . . D 3 -43.857 -9.7 -35.012 1 99.71 ? C03 59J 603 A 1 
HETATM 31 C C07 59J . . . D 3 -42.324 -13.547 -34.162 1 105.84 ? C07 59J 603 A 1 
HETATM 32 C C04 59J . . . D 3 -42.852 -14.667 -34.775 1 121.58 ? C04 59J 603 A 1 
HETATM 33 C C05 59J . . . D 3 -42.937 -14.714 -36.241 1 120.62 ? C05 59J 603 A 1 
HETATM 34 C C06 59J . . . D 3 -43.507 -9.329 -38.324 1 72.67 ? C06 59J 603 A 1 
HETATM 35 C C08 59J . . . D 3 -43.716 -15.593 -33.983 1 113.65 ? C08 59J 603 A 1 
HETATM 36 C CA 59J . . . D 3 -42.525 -8.769 -39.336 1 71.52 ? CA 59J 603 A 1 
HETATM 37 C C09 59J . . . D 3 -41.389 -13.672 -32.981 1 85.78 ? C09 59J 603 A 1 
HETATM 38 O O08 59J . . . D 3 -43.974 -10.152 -33.855 1 104.19 ? O08 59J 603 A 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           483 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           38 
#