data_5DF9 # _model_server_result.job_id GQEc24pDr2oNBtIgh6Dz2Q _model_server_result.datetime_utc '2024-11-02 12:30:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5df9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5DF9 # _exptl.entry_id 5DF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.42 _cell.angle_gamma 90 _cell.entry_id 5DF9 _cell.length_a 176.884 _cell.length_b 41.264 _cell.length_c 87.786 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 5DF9 _atom_sites.fract_transf_matrix[1][1] 0.005653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002933 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 2 SO4 SO4 . C 2 SO4 A 1 602 3 SO4 SO4 . D 3 59J A 1 603 1 59J CEH . E 4 GOL A 1 604 1 GOL GOL . F 5 HOH A 1 701 12 HOH HOH . F 5 HOH A 2 702 10 HOH HOH . F 5 HOH A 3 703 16 HOH HOH . F 5 HOH A 4 704 6 HOH HOH . F 5 HOH A 5 705 1 HOH HOH . F 5 HOH A 6 706 18 HOH HOH . F 5 HOH A 7 707 7 HOH HOH . F 5 HOH A 8 708 14 HOH HOH . F 5 HOH A 9 709 13 HOH HOH . F 5 HOH A 10 710 8 HOH HOH . F 5 HOH A 11 711 19 HOH HOH . F 5 HOH A 12 712 5 HOH HOH . F 5 HOH A 13 713 17 HOH HOH . F 5 HOH A 14 714 4 HOH HOH . F 5 HOH A 15 715 20 HOH HOH . F 5 HOH A 16 716 15 HOH HOH . F 5 HOH A 17 717 9 HOH HOH . F 5 HOH A 18 718 11 HOH HOH . F 5 HOH A 19 719 3 HOH HOH . F 5 HOH A 20 720 21 HOH HOH . F 5 HOH A 21 721 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -31.599 0.338 -31.582 1 73.7 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . E 4 -32.261 0.282 -30.312 1 79.74 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . E 4 -30.941 -0.999 -31.893 1 68.13 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . E 4 -30.052 -0.833 -33.007 1 74.67 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . E 4 -30.196 -1.495 -30.656 1 61.81 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . E 4 -28.962 -2.125 -31.011 1 70.04 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #