data_5DFB
#
_model_server_result.job_id            BTPY2OOwVNurN-jtUpHJhQ 
_model_server_result.datetime_utc      '2025-01-25 07:40:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dfb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5DFB 
#
_exptl.entry_id    5DFB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              414.488 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NONAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DFB 
_cell.length_a            32.118 
_cell.length_b            52.731 
_cell.length_c            71.464 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DFB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -52.731 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H38 O10' 
_chem_comp.formula_weight    414.488 
_chem_comp.id                2PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NONAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 2PE sing 1 n n 
O1 HO1 2PE sing 2 n n 
C2 C3 2PE sing 3 n n 
C2 H21 2PE sing 4 n n 
C2 H22 2PE sing 5 n n 
C3 O4 2PE sing 6 n n 
C3 H31 2PE sing 7 n n 
C3 H32 2PE sing 8 n n 
O4 C5 2PE sing 9 n n 
C5 C6 2PE sing 10 n n 
C5 H51 2PE sing 11 n n 
C5 H52 2PE sing 12 n n 
C6 O7 2PE sing 13 n n 
C6 H61 2PE sing 14 n n 
C6 H62 2PE sing 15 n n 
O7 C8 2PE sing 16 n n 
C8 C9 2PE sing 17 n n 
C8 H81 2PE sing 18 n n 
C8 H82 2PE sing 19 n n 
C9 O10 2PE sing 20 n n 
C9 H91 2PE sing 21 n n 
C9 H92 2PE sing 22 n n 
O10 C11 2PE sing 23 n n 
C11 C12 2PE sing 24 n n 
C11 H111 2PE sing 25 n n 
C11 H112 2PE sing 26 n n 
C12 O13 2PE sing 27 n n 
C12 H121 2PE sing 28 n n 
C12 H122 2PE sing 29 n n 
O13 C14 2PE sing 30 n n 
C14 C15 2PE sing 31 n n 
C14 H141 2PE sing 32 n n 
C14 H142 2PE sing 33 n n 
C15 O16 2PE sing 34 n n 
C15 H151 2PE sing 35 n n 
C15 H152 2PE sing 36 n n 
O16 C17 2PE sing 37 n n 
C17 C18 2PE sing 38 n n 
C17 H171 2PE sing 39 n n 
C17 H172 2PE sing 40 n n 
C18 O19 2PE sing 41 n n 
C18 H181 2PE sing 42 n n 
C18 H182 2PE sing 43 n n 
O19 C20 2PE sing 44 n n 
C20 C21 2PE sing 45 n n 
C20 H201 2PE sing 46 n n 
C20 H202 2PE sing 47 n n 
C21 O22 2PE sing 48 n n 
C21 H211 2PE sing 49 n n 
C21 H212 2PE sing 50 n n 
O22 C23 2PE sing 51 n n 
C23 C24 2PE sing 52 n n 
C23 H231 2PE sing 53 n n 
C23 H232 2PE sing 54 n n 
C24 O25 2PE sing 55 n n 
C24 H241 2PE sing 56 n n 
C24 H242 2PE sing 57 n n 
O25 C26 2PE sing 58 n n 
C26 C27 2PE sing 59 n n 
C26 H261 2PE sing 60 n n 
C26 H262 2PE sing 61 n n 
C27 O28 2PE sing 62 n n 
C27 H271 2PE sing 63 n n 
C27 H272 2PE sing 64 n n 
O28 HO2 2PE sing 65 n n 
#
_atom_sites.entry_id                     5DFB 
_atom_sites.fract_transf_matrix[1][1]    0.031135 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013993 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 501 1 NI Ni . 
C 3 2PE A 1 502 2 2PE 2PE . 
D 4 GOL A 1 503 3 GOL GOL . 
E 5 HOH A 1 601 61 HOH HOH . 
E 5 HOH A 2 602 25 HOH HOH . 
E 5 HOH A 3 603 59 HOH HOH . 
E 5 HOH A 4 604 16 HOH HOH . 
E 5 HOH A 5 605 15 HOH HOH . 
E 5 HOH A 6 606 2 HOH HOH . 
E 5 HOH A 7 607 31 HOH HOH . 
E 5 HOH A 8 608 13 HOH HOH . 
E 5 HOH A 9 609 20 HOH HOH . 
E 5 HOH A 10 610 54 HOH HOH . 
E 5 HOH A 11 611 36 HOH HOH . 
E 5 HOH A 12 612 57 HOH HOH . 
E 5 HOH A 13 613 4 HOH HOH . 
E 5 HOH A 14 614 42 HOH HOH . 
E 5 HOH A 15 615 39 HOH HOH . 
E 5 HOH A 16 616 72 HOH HOH . 
E 5 HOH A 17 617 60 HOH HOH . 
E 5 HOH A 18 618 5 HOH HOH . 
E 5 HOH A 19 619 73 HOH HOH . 
E 5 HOH A 20 620 27 HOH HOH . 
E 5 HOH A 21 621 48 HOH HOH . 
E 5 HOH A 22 622 19 HOH HOH . 
E 5 HOH A 23 623 75 HOH HOH . 
E 5 HOH A 24 624 7 HOH HOH . 
E 5 HOH A 25 625 46 HOH HOH . 
E 5 HOH A 26 626 14 HOH HOH . 
E 5 HOH A 27 627 3 HOH HOH . 
E 5 HOH A 28 628 17 HOH HOH . 
E 5 HOH A 29 629 38 HOH HOH . 
E 5 HOH A 30 630 18 HOH HOH . 
E 5 HOH A 31 631 32 HOH HOH . 
E 5 HOH A 32 632 76 HOH HOH . 
E 5 HOH A 33 633 21 HOH HOH . 
E 5 HOH A 34 634 8 HOH HOH . 
E 5 HOH A 35 635 53 HOH HOH . 
E 5 HOH A 36 636 26 HOH HOH . 
E 5 HOH A 37 637 9 HOH HOH . 
E 5 HOH A 38 638 70 HOH HOH . 
E 5 HOH A 39 639 22 HOH HOH . 
E 5 HOH A 40 640 34 HOH HOH . 
E 5 HOH A 41 641 11 HOH HOH . 
E 5 HOH A 42 642 6 HOH HOH . 
E 5 HOH A 43 643 35 HOH HOH . 
E 5 HOH A 44 644 40 HOH HOH . 
E 5 HOH A 45 645 37 HOH HOH . 
E 5 HOH A 46 646 74 HOH HOH . 
E 5 HOH A 47 647 64 HOH HOH . 
E 5 HOH A 48 648 67 HOH HOH . 
E 5 HOH A 49 649 10 HOH HOH . 
E 5 HOH A 50 650 44 HOH HOH . 
E 5 HOH A 51 651 58 HOH HOH . 
E 5 HOH A 52 652 24 HOH HOH . 
E 5 HOH A 53 653 30 HOH HOH . 
E 5 HOH A 54 654 55 HOH HOH . 
E 5 HOH A 55 655 29 HOH HOH . 
E 5 HOH A 56 656 69 HOH HOH . 
E 5 HOH A 57 657 33 HOH HOH . 
E 5 HOH A 58 658 1 HOH HOH . 
E 5 HOH A 59 659 71 HOH HOH . 
E 5 HOH A 60 660 12 HOH HOH . 
E 5 HOH A 61 661 28 HOH HOH . 
E 5 HOH A 62 662 23 HOH HOH . 
E 5 HOH A 63 663 49 HOH HOH . 
E 5 HOH A 64 664 45 HOH HOH . 
E 5 HOH A 65 665 47 HOH HOH . 
E 5 HOH A 66 666 63 HOH HOH . 
E 5 HOH A 67 667 52 HOH HOH . 
E 5 HOH A 68 668 56 HOH HOH . 
E 5 HOH A 69 669 65 HOH HOH . 
E 5 HOH A 70 670 62 HOH HOH . 
E 5 HOH A 71 671 68 HOH HOH . 
E 5 HOH A 72 672 66 HOH HOH . 
E 5 HOH A 73 673 50 HOH HOH . 
E 5 HOH A 74 674 51 HOH HOH . 
E 5 HOH A 75 675 41 HOH HOH . 
E 5 HOH A 76 676 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 2PE . . . C 3 -26.612 -12.897 16.358 1 33.77 ? O1 2PE 502 A 1 
HETATM 2 C C2 2PE . . . C 3 -25.538 -13.049 15.42 1 30.31 ? C2 2PE 502 A 1 
HETATM 3 C C3 2PE . . . C 3 -24.652 -14.229 15.812 1 27.54 ? C3 2PE 502 A 1 
HETATM 4 O O4 2PE . . . C 3 -25.433 -15.41 15.696 1 26.04 ? O4 2PE 502 A 1 
HETATM 5 C C5 2PE . . . C 3 -24.662 -16.594 15.855 1 23 ? C5 2PE 502 A 1 
HETATM 6 C C6 2PE . . . C 3 -25.518 -17.807 15.663 1 22.06 ? C6 2PE 502 A 1 
HETATM 7 O O7 2PE . . . C 3 -26.578 -17.845 16.616 1 22.12 ? O7 2PE 502 A 1 
HETATM 8 C C8 2PE . . . C 3 -27.364 -19.025 16.493 1 23.52 ? C8 2PE 502 A 1 
HETATM 9 C C9 2PE . . . C 3 -28.594 -18.851 17.366 1 23.57 ? C9 2PE 502 A 1 
HETATM 10 O O10 2PE . . . C 3 -28.207 -19.103 18.706 1 25.43 ? O10 2PE 502 A 1 
HETATM 11 C C11 2PE . . . C 3 -29.328 -19.174 19.599 1 25.78 ? C11 2PE 502 A 1 
HETATM 12 C C12 2PE . . . C 3 -28.834 -19.609 20.958 1 26.54 ? C12 2PE 502 A 1 
HETATM 13 O O13 2PE . . . C 3 -28.175 -18.47 21.507 1 26.88 ? O13 2PE 502 A 1 
HETATM 14 C C14 2PE . . . C 3 -27.753 -18.724 22.835 1 24.56 ? C14 2PE 502 A 1 
HETATM 15 C C15 2PE . . . C 3 -27.302 -17.423 23.476 1 23.49 ? C15 2PE 502 A 1 
HETATM 16 O O16 2PE . . . C 3 -26.221 -16.911 22.715 1 21.95 ? O16 2PE 502 A 1 
HETATM 17 C C17 2PE . . . C 3 -25.845 -15.604 23.17 1 20.62 ? C17 2PE 502 A 1 
HETATM 18 C C18 2PE . . . C 3 -24.823 -15.043 22.179 1 19.73 ? C18 2PE 502 A 1 
HETATM 19 O O19 2PE . . . C 3 -25.435 -14.815 20.913 1 20.75 ? O19 2PE 502 A 1 
HETATM 20 C C20 2PE . . . C 3 -24.642 -14.035 20.024 1 19.2 ? C20 2PE 502 A 1 
HETATM 21 C C21 2PE . . . C 3 -23.33 -14.709 19.629 1 17.68 ? C21 2PE 502 A 1 
HETATM 22 O O22 2PE . . . C 3 -23.538 -16.066 19.236 1 16.87 ? O22 2PE 502 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#