data_5DFC # _model_server_result.job_id 63js8qmQ1YHnxMRFQASz-Q _model_server_result.datetime_utc '2025-01-10 07:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5DFC # _exptl.entry_id 5DFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DFC _cell.length_a 32.029 _cell.length_b 52.677 _cell.length_c 71.031 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 5DFC _atom_sites.fract_transf_matrix[1][1] 0.031222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 2PE A 1 502 2 2PE 2PE . D 4 EAM A 1 503 3 EAM LIG . E 5 NI A 1 504 4 NI Ni . F 6 HOH A 1 601 63 HOH HOH . F 6 HOH A 2 602 16 HOH HOH . F 6 HOH A 3 603 2 HOH HOH . F 6 HOH A 4 604 82 HOH HOH . F 6 HOH A 5 605 42 HOH HOH . F 6 HOH A 6 606 12 HOH HOH . F 6 HOH A 7 607 29 HOH HOH . F 6 HOH A 8 608 19 HOH HOH . F 6 HOH A 9 609 4 HOH HOH . F 6 HOH A 10 610 75 HOH HOH . F 6 HOH A 11 611 43 HOH HOH . F 6 HOH A 12 612 57 HOH HOH . F 6 HOH A 13 613 8 HOH HOH . F 6 HOH A 14 614 32 HOH HOH . F 6 HOH A 15 615 24 HOH HOH . F 6 HOH A 16 616 6 HOH HOH . F 6 HOH A 17 617 9 HOH HOH . F 6 HOH A 18 618 15 HOH HOH . F 6 HOH A 19 619 84 HOH HOH . F 6 HOH A 20 620 30 HOH HOH . F 6 HOH A 21 621 56 HOH HOH . F 6 HOH A 22 622 10 HOH HOH . F 6 HOH A 23 623 7 HOH HOH . F 6 HOH A 24 624 49 HOH HOH . F 6 HOH A 25 625 35 HOH HOH . F 6 HOH A 26 626 47 HOH HOH . F 6 HOH A 27 627 14 HOH HOH . F 6 HOH A 28 628 41 HOH HOH . F 6 HOH A 29 629 40 HOH HOH . F 6 HOH A 30 630 3 HOH HOH . F 6 HOH A 31 631 54 HOH HOH . F 6 HOH A 32 632 20 HOH HOH . F 6 HOH A 33 633 73 HOH HOH . F 6 HOH A 34 634 5 HOH HOH . F 6 HOH A 35 635 34 HOH HOH . F 6 HOH A 36 636 61 HOH HOH . F 6 HOH A 37 637 26 HOH HOH . F 6 HOH A 38 638 50 HOH HOH . F 6 HOH A 39 639 46 HOH HOH . F 6 HOH A 40 640 48 HOH HOH . F 6 HOH A 41 641 76 HOH HOH . F 6 HOH A 42 642 27 HOH HOH . F 6 HOH A 43 643 28 HOH HOH . F 6 HOH A 44 644 18 HOH HOH . F 6 HOH A 45 645 13 HOH HOH . F 6 HOH A 46 646 31 HOH HOH . F 6 HOH A 47 647 17 HOH HOH . F 6 HOH A 48 648 79 HOH HOH . F 6 HOH A 49 649 65 HOH HOH . F 6 HOH A 50 650 77 HOH HOH . F 6 HOH A 51 651 59 HOH HOH . F 6 HOH A 52 652 37 HOH HOH . F 6 HOH A 53 653 11 HOH HOH . F 6 HOH A 54 654 69 HOH HOH . F 6 HOH A 55 655 22 HOH HOH . F 6 HOH A 56 656 36 HOH HOH . F 6 HOH A 57 657 60 HOH HOH . F 6 HOH A 58 658 70 HOH HOH . F 6 HOH A 59 659 1 HOH HOH . F 6 HOH A 60 660 78 HOH HOH . F 6 HOH A 61 661 25 HOH HOH . F 6 HOH A 62 662 83 HOH HOH . F 6 HOH A 63 663 21 HOH HOH . F 6 HOH A 64 664 64 HOH HOH . F 6 HOH A 65 665 52 HOH HOH . F 6 HOH A 66 666 66 HOH HOH . F 6 HOH A 67 667 23 HOH HOH . F 6 HOH A 68 668 51 HOH HOH . F 6 HOH A 69 669 53 HOH HOH . F 6 HOH A 70 670 45 HOH HOH . F 6 HOH A 71 671 80 HOH HOH . F 6 HOH A 72 672 33 HOH HOH . F 6 HOH A 73 673 71 HOH HOH . F 6 HOH A 74 674 72 HOH HOH . F 6 HOH A 75 675 81 HOH HOH . F 6 HOH A 76 676 67 HOH HOH . F 6 HOH A 77 677 62 HOH HOH . F 6 HOH A 78 678 38 HOH HOH . F 6 HOH A 79 679 58 HOH HOH . F 6 HOH A 80 680 44 HOH HOH . F 6 HOH A 81 681 55 HOH HOH . F 6 HOH A 82 682 74 HOH HOH . F 6 HOH A 83 683 39 HOH HOH . F 6 HOH A 84 684 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . C 3 -23.524 -16.083 19.173 1 16.53 ? O1 2PE 502 A 1 HETATM 2 C C2 2PE . . . C 3 -23.312 -14.708 19.517 1 17.83 ? C2 2PE 502 A 1 HETATM 3 C C3 2PE . . . C 3 -24.648 -14.017 19.816 1 18.75 ? C3 2PE 502 A 1 HETATM 4 O O4 2PE . . . C 3 -25.48 -14.783 20.688 1 20.27 ? O4 2PE 502 A 1 HETATM 5 C C5 2PE . . . C 3 -24.962 -14.934 22.009 1 21.25 ? C5 2PE 502 A 1 HETATM 6 C C6 2PE . . . C 3 -26.024 -15.527 22.919 1 22.33 ? C6 2PE 502 A 1 HETATM 7 O O7 2PE . . . C 3 -26.41 -16.804 22.401 1 23.5 ? O7 2PE 502 A 1 HETATM 8 C C8 2PE . . . C 3 -27.433 -17.47 23.133 1 25.62 ? C8 2PE 502 A 1 HETATM 9 C C9 2PE . . . C 3 -28.029 -18.604 22.287 1 26.4 ? C9 2PE 502 A 1 HETATM 10 O O10 2PE . . . C 3 -28.281 -18.131 20.958 1 27.91 ? O10 2PE 502 A 1 HETATM 11 C C11 2PE . . . C 3 -29.161 -18.901 20.111 1 28.55 ? C11 2PE 502 A 1 HETATM 12 C C12 2PE . . . C 3 -28.407 -19.535 18.934 1 27.66 ? C12 2PE 502 A 1 HETATM 13 O O13 2PE . . . C 3 -28.431 -18.775 17.726 1 27.12 ? O13 2PE 502 A 1 HETATM 14 C C14 2PE . . . C 3 -27.394 -19.092 16.765 1 26.01 ? C14 2PE 502 A 1 HETATM 15 C C15 2PE . . . C 3 -26.701 -17.777 16.461 1 24.02 ? C15 2PE 502 A 1 HETATM 16 O O16 2PE . . . C 3 -25.524 -17.845 15.663 1 26.27 ? O16 2PE 502 A 1 HETATM 17 C C17 2PE . . . C 3 -24.651 -16.737 15.891 1 24.92 ? C17 2PE 502 A 1 HETATM 18 C C18 2PE . . . C 3 -25.299 -15.445 15.427 1 25.23 ? C18 2PE 502 A 1 HETATM 19 O O19 2PE . . . C 3 -24.567 -14.312 15.872 1 29.04 ? O19 2PE 502 A 1 HETATM 20 C C20 2PE . . . C 3 -25.238 -13.096 15.522 1 31.32 ? C20 2PE 502 A 1 HETATM 21 C C21 2PE . . . C 3 -26.403 -12.816 16.47 1 32.4 ? C21 2PE 502 A 1 HETATM 22 O O22 2PE . . . C 3 -27.534 -12.352 15.733 1 36.69 ? O22 2PE 502 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #