data_5DFC # _model_server_result.job_id Y2zNbzmG6ns4bMxh-iohNg _model_server_result.datetime_utc '2025-01-25 07:22:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5DFC # _exptl.entry_id 5DFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.895 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DFC _cell.length_a 32.029 _cell.length_b 52.677 _cell.length_c 71.031 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H22 Cl N5 O2' _chem_comp.formula_weight 423.895 _chem_comp.id EAM _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C10 EAM sing 148 n n C10 C9 EAM doub 149 n y C10 C11 EAM sing 150 n y C9 C8 EAM sing 151 n y C8 C7 EAM doub 152 n y C11 C12 EAM doub 153 n y C12 C7 EAM sing 154 n y C7 C6 EAM sing 155 n n C6 N2 EAM doub 156 n n C6 C13 EAM sing 157 n n N2 C5 EAM sing 158 n n C13 C19 EAM doub 159 n y C13 C14 EAM sing 160 n y C19 C18 EAM sing 161 n y C19 N3 EAM sing 162 n y C18 C17 EAM doub 163 n y C17 C15 EAM sing 164 n y C15 O2 EAM sing 165 n n C15 C14 EAM doub 166 n y O2 C16 EAM sing 167 n n N3 C22 EAM sing 168 n y N3 C20 EAM sing 169 n y C22 N5 EAM doub 170 n y C22 C5 EAM sing 171 n n N5 N4 EAM sing 172 n y N4 C20 EAM doub 173 n y C20 C21 EAM sing 174 n n C5 C4 EAM sing 175 n n C4 C3 EAM sing 176 n n C3 O1 EAM doub 177 n n C3 N1 EAM sing 178 n n N1 C2 EAM sing 179 n n C2 C1 EAM sing 180 n n C9 H9 EAM sing 181 n n C8 H8 EAM sing 182 n n C11 H11 EAM sing 183 n n C12 H12 EAM sing 184 n n C18 H18 EAM sing 185 n n C17 H17 EAM sing 186 n n C16 H16 EAM sing 187 n n C16 H16A EAM sing 188 n n C16 H16B EAM sing 189 n n C14 H14 EAM sing 190 n n C21 H21 EAM sing 191 n n C21 H21A EAM sing 192 n n C21 H21B EAM sing 193 n n C5 H5 EAM sing 194 n n C4 H4 EAM sing 195 n n C4 H4A EAM sing 196 n n N1 HN1 EAM sing 197 n n C2 H2 EAM sing 198 n n C2 H2A EAM sing 199 n n C1 H1 EAM sing 200 n n C1 H1A EAM sing 201 n n C1 H1B EAM sing 202 n n # _atom_sites.entry_id 5DFC _atom_sites.fract_transf_matrix[1][1] 0.031222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 2PE A 1 502 2 2PE 2PE . D 4 EAM A 1 503 3 EAM LIG . E 5 NI A 1 504 4 NI Ni . F 6 HOH A 1 601 63 HOH HOH . F 6 HOH A 2 602 16 HOH HOH . F 6 HOH A 3 603 2 HOH HOH . F 6 HOH A 4 604 82 HOH HOH . F 6 HOH A 5 605 42 HOH HOH . F 6 HOH A 6 606 12 HOH HOH . F 6 HOH A 7 607 29 HOH HOH . F 6 HOH A 8 608 19 HOH HOH . F 6 HOH A 9 609 4 HOH HOH . F 6 HOH A 10 610 75 HOH HOH . F 6 HOH A 11 611 43 HOH HOH . F 6 HOH A 12 612 57 HOH HOH . F 6 HOH A 13 613 8 HOH HOH . F 6 HOH A 14 614 32 HOH HOH . F 6 HOH A 15 615 24 HOH HOH . F 6 HOH A 16 616 6 HOH HOH . F 6 HOH A 17 617 9 HOH HOH . F 6 HOH A 18 618 15 HOH HOH . F 6 HOH A 19 619 84 HOH HOH . F 6 HOH A 20 620 30 HOH HOH . F 6 HOH A 21 621 56 HOH HOH . F 6 HOH A 22 622 10 HOH HOH . F 6 HOH A 23 623 7 HOH HOH . F 6 HOH A 24 624 49 HOH HOH . F 6 HOH A 25 625 35 HOH HOH . F 6 HOH A 26 626 47 HOH HOH . F 6 HOH A 27 627 14 HOH HOH . F 6 HOH A 28 628 41 HOH HOH . F 6 HOH A 29 629 40 HOH HOH . F 6 HOH A 30 630 3 HOH HOH . F 6 HOH A 31 631 54 HOH HOH . F 6 HOH A 32 632 20 HOH HOH . F 6 HOH A 33 633 73 HOH HOH . F 6 HOH A 34 634 5 HOH HOH . F 6 HOH A 35 635 34 HOH HOH . F 6 HOH A 36 636 61 HOH HOH . F 6 HOH A 37 637 26 HOH HOH . F 6 HOH A 38 638 50 HOH HOH . F 6 HOH A 39 639 46 HOH HOH . F 6 HOH A 40 640 48 HOH HOH . F 6 HOH A 41 641 76 HOH HOH . F 6 HOH A 42 642 27 HOH HOH . F 6 HOH A 43 643 28 HOH HOH . F 6 HOH A 44 644 18 HOH HOH . F 6 HOH A 45 645 13 HOH HOH . F 6 HOH A 46 646 31 HOH HOH . F 6 HOH A 47 647 17 HOH HOH . F 6 HOH A 48 648 79 HOH HOH . F 6 HOH A 49 649 65 HOH HOH . F 6 HOH A 50 650 77 HOH HOH . F 6 HOH A 51 651 59 HOH HOH . F 6 HOH A 52 652 37 HOH HOH . F 6 HOH A 53 653 11 HOH HOH . F 6 HOH A 54 654 69 HOH HOH . F 6 HOH A 55 655 22 HOH HOH . F 6 HOH A 56 656 36 HOH HOH . F 6 HOH A 57 657 60 HOH HOH . F 6 HOH A 58 658 70 HOH HOH . F 6 HOH A 59 659 1 HOH HOH . F 6 HOH A 60 660 78 HOH HOH . F 6 HOH A 61 661 25 HOH HOH . F 6 HOH A 62 662 83 HOH HOH . F 6 HOH A 63 663 21 HOH HOH . F 6 HOH A 64 664 64 HOH HOH . F 6 HOH A 65 665 52 HOH HOH . F 6 HOH A 66 666 66 HOH HOH . F 6 HOH A 67 667 23 HOH HOH . F 6 HOH A 68 668 51 HOH HOH . F 6 HOH A 69 669 53 HOH HOH . F 6 HOH A 70 670 45 HOH HOH . F 6 HOH A 71 671 80 HOH HOH . F 6 HOH A 72 672 33 HOH HOH . F 6 HOH A 73 673 71 HOH HOH . F 6 HOH A 74 674 72 HOH HOH . F 6 HOH A 75 675 81 HOH HOH . F 6 HOH A 76 676 67 HOH HOH . F 6 HOH A 77 677 62 HOH HOH . F 6 HOH A 78 678 38 HOH HOH . F 6 HOH A 79 679 58 HOH HOH . F 6 HOH A 80 680 44 HOH HOH . F 6 HOH A 81 681 55 HOH HOH . F 6 HOH A 82 682 74 HOH HOH . F 6 HOH A 83 683 39 HOH HOH . F 6 HOH A 84 684 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL EAM . . . D 4 -0.561 -9.537 -2.454 1 28.56 ? CL EAM 503 A 1 HETATM 2 C C10 EAM . . . D 4 -2.142 -9.269 -3.15 1 22.61 ? C10 EAM 503 A 1 HETATM 3 C C9 EAM . . . D 4 -2.29 -8.909 -4.489 1 23.08 ? C9 EAM 503 A 1 HETATM 4 C C8 EAM . . . D 4 -3.569 -8.692 -5.013 1 21.52 ? C8 EAM 503 A 1 HETATM 5 C C11 EAM . . . D 4 -3.267 -9.399 -2.352 1 22.79 ? C11 EAM 503 A 1 HETATM 6 C C12 EAM . . . D 4 -4.528 -9.178 -2.873 1 20.96 ? C12 EAM 503 A 1 HETATM 7 C C7 EAM . . . D 4 -4.705 -8.826 -4.208 1 20.22 ? C7 EAM 503 A 1 HETATM 8 C C6 EAM . . . D 4 -5.993 -8.629 -4.744 1 19.5 ? C6 EAM 503 A 1 HETATM 9 N N2 EAM . . . D 4 -6.168 -9.051 -6.003 1 18.64 ? N2 EAM 503 A 1 HETATM 10 C C13 EAM . . . D 4 -7.075 -8.133 -3.995 1 18.96 ? C13 EAM 503 A 1 HETATM 11 C C19 EAM . . . D 4 -8.389 -8.627 -4.054 1 18.21 ? C19 EAM 503 A 1 HETATM 12 C C18 EAM . . . D 4 -9.383 -8.03 -3.251 1 18.06 ? C18 EAM 503 A 1 HETATM 13 C C17 EAM . . . D 4 -9.05 -6.985 -2.39 1 18.85 ? C17 EAM 503 A 1 HETATM 14 C C15 EAM . . . D 4 -7.733 -6.509 -2.329 1 20.17 ? C15 EAM 503 A 1 HETATM 15 O O2 EAM . . . D 4 -7.318 -5.482 -1.51 1 22.28 ? O2 EAM 503 A 1 HETATM 16 C C16 EAM . . . D 4 -8.333 -4.786 -0.761 1 23.95 ? C16 EAM 503 A 1 HETATM 17 C C14 EAM . . . D 4 -6.754 -7.086 -3.126 1 20.02 ? C14 EAM 503 A 1 HETATM 18 N N3 EAM . . . D 4 -8.803 -9.64 -4.879 1 16.91 ? N3 EAM 503 A 1 HETATM 19 C C22 EAM . . . D 4 -8.361 -9.774 -6.146 1 18.17 ? C22 EAM 503 A 1 HETATM 20 N N5 EAM . . . D 4 -8.923 -10.851 -6.708 1 17.88 ? N5 EAM 503 A 1 HETATM 21 N N4 EAM . . . D 4 -9.735 -11.435 -5.789 1 16.2 ? N4 EAM 503 A 1 HETATM 22 C C20 EAM . . . D 4 -9.632 -10.691 -4.673 1 16.89 ? C20 EAM 503 A 1 HETATM 23 C C21 EAM . . . D 4 -10.382 -10.978 -3.359 1 16.9 ? C21 EAM 503 A 1 HETATM 24 C C5 EAM . . . D 4 -7.436 -8.913 -6.777 1 18.73 ? C5 EAM 503 A 1 HETATM 25 C C4 EAM . . . D 4 -7.119 -9.123 -8.268 1 19.93 ? C4 EAM 503 A 1 HETATM 26 C C3 EAM . . . D 4 -6.063 -8.035 -8.631 1 21.88 ? C3 EAM 503 A 1 HETATM 27 O O1 EAM . . . D 4 -6.332 -6.84 -8.477 1 21.8 ? O1 EAM 503 A 1 HETATM 28 N N1 EAM . . . D 4 -4.853 -8.472 -9.031 1 24.55 ? N1 EAM 503 A 1 HETATM 29 C C2 EAM . . . D 4 -3.753 -7.528 -9.372 1 25.73 ? C2 EAM 503 A 1 HETATM 30 C C1 EAM . . . D 4 -2.418 -8.27 -9.473 1 27.34 ? C1 EAM 503 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #