data_5DFD
#
_model_server_result.job_id            2S7QG07ng_AzMvRHmlbaFQ 
_model_server_result.datetime_utc      '2025-01-10 12:00:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5DFD 
#
_exptl.entry_id    5DFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              415.445 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl [(4S)-6-(1H-indol-4-yl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]acetate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DFD 
_cell.length_a            32.122 
_cell.length_b            52.439 
_cell.length_c            71.97 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H21 N5 O3' 
_chem_comp.formula_weight    415.445 
_chem_comp.id                59E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl [(4S)-6-(1H-indol-4-yl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]acetate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAV CAT 59E doub 1 n n 
CAW OAU 59E sing 2 n n 
CAT OAU 59E sing 3 n n 
CAT CAS 59E sing 4 n n 
CAS CAI 59E sing 5 n n 
CAI CAJ 59E sing 6 n n 
CAI NAH 59E sing 7 n n 
NAN CAJ 59E doub 8 n y 
NAN NAO 59E sing 9 n y 
CBD CBE 59E doub 10 n y 
CBD NBC 59E sing 11 n y 
CBE CBB 59E sing 12 n y 
CAJ NAK 59E sing 13 n y 
NAH CAG 59E doub 14 n n 
NAO CAP 59E doub 15 n y 
NBC CBA 59E sing 16 n y 
CBB CBA 59E doub 17 n y 
CBB CAQ 59E sing 18 n y 
CAG CAQ 59E sing 19 n n 
CAG CAD 59E sing 20 n n 
NAK CAP 59E sing 21 n y 
NAK CAE 59E sing 22 n n 
CAP CAR 59E sing 23 n n 
CBA CAZ 59E sing 24 n y 
CAQ CAX 59E doub 25 n y 
CAD CAE 59E doub 26 n y 
CAD CAC 59E sing 27 n y 
CAE CAF 59E sing 28 n y 
CAZ CAY 59E doub 29 n y 
CAF CAA 59E doub 30 n y 
CAC CAB 59E doub 31 n y 
CAX CAY 59E sing 32 n y 
CAB CAA 59E sing 33 n y 
CAB OAL 59E sing 34 n n 
OAL CAM 59E sing 35 n n 
CAW H1 59E sing 36 n n 
CAW H2 59E sing 37 n n 
CAW H3 59E sing 38 n n 
CAS H4 59E sing 39 n n 
CAS H5 59E sing 40 n n 
CAI H6 59E sing 41 n n 
CAR H7 59E sing 42 n n 
CAR H8 59E sing 43 n n 
CAR H9 59E sing 44 n n 
CAF H10 59E sing 45 n n 
CAA H11 59E sing 46 n n 
CAM H12 59E sing 47 n n 
CAM H13 59E sing 48 n n 
CAM H14 59E sing 49 n n 
CAC H15 59E sing 50 n n 
CBE H16 59E sing 51 n n 
CBD H17 59E sing 52 n n 
NBC H18 59E sing 53 n n 
CAZ H19 59E sing 54 n n 
CAY H20 59E sing 55 n n 
CAX H21 59E sing 56 n n 
#
_atom_sites.entry_id                     5DFD 
_atom_sites.fract_transf_matrix[1][1]    0.031131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01907 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 59E A 1 501 1 59E LIG . 
C 3 GOL A 1 502 2 GOL GOL . 
D 4 HOH A 1 601 79 HOH HOH . 
D 4 HOH A 2 602 58 HOH HOH . 
D 4 HOH A 3 603 34 HOH HOH . 
D 4 HOH A 4 604 69 HOH HOH . 
D 4 HOH A 5 605 10 HOH HOH . 
D 4 HOH A 6 606 9 HOH HOH . 
D 4 HOH A 7 607 5 HOH HOH . 
D 4 HOH A 8 608 36 HOH HOH . 
D 4 HOH A 9 609 19 HOH HOH . 
D 4 HOH A 10 610 16 HOH HOH . 
D 4 HOH A 11 611 68 HOH HOH . 
D 4 HOH A 12 612 81 HOH HOH . 
D 4 HOH A 13 613 67 HOH HOH . 
D 4 HOH A 14 614 23 HOH HOH . 
D 4 HOH A 15 615 87 HOH HOH . 
D 4 HOH A 16 616 40 HOH HOH . 
D 4 HOH A 17 617 6 HOH HOH . 
D 4 HOH A 18 618 8 HOH HOH . 
D 4 HOH A 19 619 50 HOH HOH . 
D 4 HOH A 20 620 28 HOH HOH . 
D 4 HOH A 21 621 61 HOH HOH . 
D 4 HOH A 22 622 15 HOH HOH . 
D 4 HOH A 23 623 63 HOH HOH . 
D 4 HOH A 24 624 22 HOH HOH . 
D 4 HOH A 25 625 70 HOH HOH . 
D 4 HOH A 26 626 59 HOH HOH . 
D 4 HOH A 27 627 80 HOH HOH . 
D 4 HOH A 28 628 12 HOH HOH . 
D 4 HOH A 29 629 3 HOH HOH . 
D 4 HOH A 30 630 25 HOH HOH . 
D 4 HOH A 31 631 18 HOH HOH . 
D 4 HOH A 32 632 77 HOH HOH . 
D 4 HOH A 33 633 33 HOH HOH . 
D 4 HOH A 34 634 13 HOH HOH . 
D 4 HOH A 35 635 11 HOH HOH . 
D 4 HOH A 36 636 7 HOH HOH . 
D 4 HOH A 37 637 56 HOH HOH . 
D 4 HOH A 38 638 2 HOH HOH . 
D 4 HOH A 39 639 86 HOH HOH . 
D 4 HOH A 40 640 41 HOH HOH . 
D 4 HOH A 41 641 17 HOH HOH . 
D 4 HOH A 42 642 27 HOH HOH . 
D 4 HOH A 43 643 38 HOH HOH . 
D 4 HOH A 44 644 30 HOH HOH . 
D 4 HOH A 45 645 71 HOH HOH . 
D 4 HOH A 46 646 14 HOH HOH . 
D 4 HOH A 47 647 39 HOH HOH . 
D 4 HOH A 48 648 44 HOH HOH . 
D 4 HOH A 49 649 49 HOH HOH . 
D 4 HOH A 50 650 76 HOH HOH . 
D 4 HOH A 51 651 32 HOH HOH . 
D 4 HOH A 52 652 35 HOH HOH . 
D 4 HOH A 53 653 43 HOH HOH . 
D 4 HOH A 54 654 21 HOH HOH . 
D 4 HOH A 55 655 42 HOH HOH . 
D 4 HOH A 56 656 24 HOH HOH . 
D 4 HOH A 57 657 26 HOH HOH . 
D 4 HOH A 58 658 83 HOH HOH . 
D 4 HOH A 59 659 45 HOH HOH . 
D 4 HOH A 60 660 72 HOH HOH . 
D 4 HOH A 61 661 31 HOH HOH . 
D 4 HOH A 62 662 48 HOH HOH . 
D 4 HOH A 63 663 73 HOH HOH . 
D 4 HOH A 64 664 37 HOH HOH . 
D 4 HOH A 65 665 82 HOH HOH . 
D 4 HOH A 66 666 1 HOH HOH . 
D 4 HOH A 67 667 66 HOH HOH . 
D 4 HOH A 68 668 85 HOH HOH . 
D 4 HOH A 69 669 29 HOH HOH . 
D 4 HOH A 70 670 47 HOH HOH . 
D 4 HOH A 71 671 64 HOH HOH . 
D 4 HOH A 72 672 88 HOH HOH . 
D 4 HOH A 73 673 46 HOH HOH . 
D 4 HOH A 74 674 4 HOH HOH . 
D 4 HOH A 75 675 55 HOH HOH . 
D 4 HOH A 76 676 84 HOH HOH . 
D 4 HOH A 77 677 62 HOH HOH . 
D 4 HOH A 78 678 75 HOH HOH . 
D 4 HOH A 79 679 54 HOH HOH . 
D 4 HOH A 80 680 53 HOH HOH . 
D 4 HOH A 81 681 65 HOH HOH . 
D 4 HOH A 82 682 57 HOH HOH . 
D 4 HOH A 83 683 52 HOH HOH . 
D 4 HOH A 84 684 60 HOH HOH . 
D 4 HOH A 85 685 78 HOH HOH . 
D 4 HOH A 86 686 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAW 59E . . . B 2 -5.515 -6.146 -9.308 1 22.21 ? CAW 59E 501 A 1 
HETATM 2 O OAU 59E . . . B 2 -6.453 -7.031 -8.656 1 19.93 ? OAU 59E 501 A 1 
HETATM 3 C CAT 59E . . . B 2 -6.437 -8.303 -9.105 1 19.62 ? CAT 59E 501 A 1 
HETATM 4 O OAV 59E . . . B 2 -5.652 -8.695 -9.973 1 24.8 ? OAV 59E 501 A 1 
HETATM 5 C CAS 59E . . . B 2 -7.495 -9.262 -8.527 1 17.34 ? CAS 59E 501 A 1 
HETATM 6 C CAI 59E . . . B 2 -7.657 -8.969 -7.015 1 15.94 ? CAI 59E 501 A 1 
HETATM 7 N NAH 59E . . . B 2 -6.335 -9.084 -6.309 1 15.64 ? NAH 59E 501 A 1 
HETATM 8 C CAJ 59E . . . B 2 -8.564 -9.842 -6.328 1 15.1 ? CAJ 59E 501 A 1 
HETATM 9 N NAN 59E . . . B 2 -9.134 -10.955 -6.839 1 14.77 ? NAN 59E 501 A 1 
HETATM 10 N NAO 59E . . . B 2 -9.899 -11.521 -5.87 1 13.91 ? NAO 59E 501 A 1 
HETATM 11 C CAP 59E . . . B 2 -9.759 -10.757 -4.792 1 14.61 ? CAP 59E 501 A 1 
HETATM 12 C CAR 59E . . . B 2 -10.45 -11.064 -3.472 1 13.99 ? CAR 59E 501 A 1 
HETATM 13 N NAK 59E . . . B 2 -8.953 -9.685 -5.048 1 14.61 ? NAK 59E 501 A 1 
HETATM 14 C CAE 59E . . . B 2 -8.506 -8.647 -4.268 1 15.72 ? CAE 59E 501 A 1 
HETATM 15 C CAF 59E . . . B 2 -9.473 -8.05 -3.433 1 15.29 ? CAF 59E 501 A 1 
HETATM 16 C CAA 59E . . . B 2 -9.135 -6.999 -2.586 1 15.99 ? CAA 59E 501 A 1 
HETATM 17 C CAB 59E . . . B 2 -7.818 -6.52 -2.586 1 17.06 ? CAB 59E 501 A 1 
HETATM 18 O OAL 59E . . . B 2 -7.379 -5.47 -1.777 1 20.21 ? OAL 59E 501 A 1 
HETATM 19 C CAM 59E . . . B 2 -8.35 -4.707 -1.05 1 21.36 ? CAM 59E 501 A 1 
HETATM 20 C CAC 59E . . . B 2 -6.862 -7.094 -3.422 1 17.37 ? CAC 59E 501 A 1 
HETATM 21 C CAD 59E . . . B 2 -7.186 -8.157 -4.27 1 16.06 ? CAD 59E 501 A 1 
HETATM 22 C CAG 59E . . . B 2 -6.113 -8.646 -5.057 1 16.49 ? CAG 59E 501 A 1 
HETATM 23 C CAQ 59E . . . B 2 -4.779 -8.833 -4.564 1 16.64 ? CAQ 59E 501 A 1 
HETATM 24 C CBB 59E . . . B 2 -3.639 -8.572 -5.279 1 18.24 ? CBB 59E 501 A 1 
HETATM 25 C CBE 59E . . . B 2 -3.425 -8.091 -6.522 1 19.65 ? CBE 59E 501 A 1 
HETATM 26 C CBD 59E . . . B 2 -2.102 -8.04 -6.746 1 20.15 ? CBD 59E 501 A 1 
HETATM 27 N NBC 59E . . . B 2 -1.478 -8.471 -5.652 1 20.4 ? NBC 59E 501 A 1 
HETATM 28 C CBA 59E . . . B 2 -2.412 -8.807 -4.755 1 18.66 ? CBA 59E 501 A 1 
HETATM 29 C CAZ 59E . . . B 2 -2.248 -9.273 -3.507 1 17.98 ? CAZ 59E 501 A 1 
HETATM 30 C CAY 59E . . . B 2 -3.365 -9.555 -2.719 1 17.81 ? CAY 59E 501 A 1 
HETATM 31 C CAX 59E . . . B 2 -4.625 -9.313 -3.252 1 16.68 ? CAX 59E 501 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#