data_5DFD
#
_model_server_result.job_id            QCgnqyZFR-9oD8EVDIW7VQ 
_model_server_result.datetime_utc      '2025-01-25 10:28:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    5DFD 
#
_exptl.entry_id    5DFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DFD 
_cell.length_a            32.122 
_cell.length_b            52.439 
_cell.length_c            71.97 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 185 n n 
C1 C2 GOL sing 186 n n 
C1 H11 GOL sing 187 n n 
C1 H12 GOL sing 188 n n 
O1 HO1 GOL sing 189 n n 
C2 O2 GOL sing 190 n n 
C2 C3 GOL sing 191 n n 
C2 H2 GOL sing 192 n n 
O2 HO2 GOL sing 193 n n 
C3 O3 GOL sing 194 n n 
C3 H31 GOL sing 195 n n 
C3 H32 GOL sing 196 n n 
O3 HO3 GOL sing 197 n n 
#
_atom_sites.entry_id                     5DFD 
_atom_sites.fract_transf_matrix[1][1]    0.031131 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01907 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 59E A 1 501 1 59E LIG . 
C 3 GOL A 1 502 2 GOL GOL . 
D 4 HOH A 1 601 79 HOH HOH . 
D 4 HOH A 2 602 58 HOH HOH . 
D 4 HOH A 3 603 34 HOH HOH . 
D 4 HOH A 4 604 69 HOH HOH . 
D 4 HOH A 5 605 10 HOH HOH . 
D 4 HOH A 6 606 9 HOH HOH . 
D 4 HOH A 7 607 5 HOH HOH . 
D 4 HOH A 8 608 36 HOH HOH . 
D 4 HOH A 9 609 19 HOH HOH . 
D 4 HOH A 10 610 16 HOH HOH . 
D 4 HOH A 11 611 68 HOH HOH . 
D 4 HOH A 12 612 81 HOH HOH . 
D 4 HOH A 13 613 67 HOH HOH . 
D 4 HOH A 14 614 23 HOH HOH . 
D 4 HOH A 15 615 87 HOH HOH . 
D 4 HOH A 16 616 40 HOH HOH . 
D 4 HOH A 17 617 6 HOH HOH . 
D 4 HOH A 18 618 8 HOH HOH . 
D 4 HOH A 19 619 50 HOH HOH . 
D 4 HOH A 20 620 28 HOH HOH . 
D 4 HOH A 21 621 61 HOH HOH . 
D 4 HOH A 22 622 15 HOH HOH . 
D 4 HOH A 23 623 63 HOH HOH . 
D 4 HOH A 24 624 22 HOH HOH . 
D 4 HOH A 25 625 70 HOH HOH . 
D 4 HOH A 26 626 59 HOH HOH . 
D 4 HOH A 27 627 80 HOH HOH . 
D 4 HOH A 28 628 12 HOH HOH . 
D 4 HOH A 29 629 3 HOH HOH . 
D 4 HOH A 30 630 25 HOH HOH . 
D 4 HOH A 31 631 18 HOH HOH . 
D 4 HOH A 32 632 77 HOH HOH . 
D 4 HOH A 33 633 33 HOH HOH . 
D 4 HOH A 34 634 13 HOH HOH . 
D 4 HOH A 35 635 11 HOH HOH . 
D 4 HOH A 36 636 7 HOH HOH . 
D 4 HOH A 37 637 56 HOH HOH . 
D 4 HOH A 38 638 2 HOH HOH . 
D 4 HOH A 39 639 86 HOH HOH . 
D 4 HOH A 40 640 41 HOH HOH . 
D 4 HOH A 41 641 17 HOH HOH . 
D 4 HOH A 42 642 27 HOH HOH . 
D 4 HOH A 43 643 38 HOH HOH . 
D 4 HOH A 44 644 30 HOH HOH . 
D 4 HOH A 45 645 71 HOH HOH . 
D 4 HOH A 46 646 14 HOH HOH . 
D 4 HOH A 47 647 39 HOH HOH . 
D 4 HOH A 48 648 44 HOH HOH . 
D 4 HOH A 49 649 49 HOH HOH . 
D 4 HOH A 50 650 76 HOH HOH . 
D 4 HOH A 51 651 32 HOH HOH . 
D 4 HOH A 52 652 35 HOH HOH . 
D 4 HOH A 53 653 43 HOH HOH . 
D 4 HOH A 54 654 21 HOH HOH . 
D 4 HOH A 55 655 42 HOH HOH . 
D 4 HOH A 56 656 24 HOH HOH . 
D 4 HOH A 57 657 26 HOH HOH . 
D 4 HOH A 58 658 83 HOH HOH . 
D 4 HOH A 59 659 45 HOH HOH . 
D 4 HOH A 60 660 72 HOH HOH . 
D 4 HOH A 61 661 31 HOH HOH . 
D 4 HOH A 62 662 48 HOH HOH . 
D 4 HOH A 63 663 73 HOH HOH . 
D 4 HOH A 64 664 37 HOH HOH . 
D 4 HOH A 65 665 82 HOH HOH . 
D 4 HOH A 66 666 1 HOH HOH . 
D 4 HOH A 67 667 66 HOH HOH . 
D 4 HOH A 68 668 85 HOH HOH . 
D 4 HOH A 69 669 29 HOH HOH . 
D 4 HOH A 70 670 47 HOH HOH . 
D 4 HOH A 71 671 64 HOH HOH . 
D 4 HOH A 72 672 88 HOH HOH . 
D 4 HOH A 73 673 46 HOH HOH . 
D 4 HOH A 74 674 4 HOH HOH . 
D 4 HOH A 75 675 55 HOH HOH . 
D 4 HOH A 76 676 84 HOH HOH . 
D 4 HOH A 77 677 62 HOH HOH . 
D 4 HOH A 78 678 75 HOH HOH . 
D 4 HOH A 79 679 54 HOH HOH . 
D 4 HOH A 80 680 53 HOH HOH . 
D 4 HOH A 81 681 65 HOH HOH . 
D 4 HOH A 82 682 57 HOH HOH . 
D 4 HOH A 83 683 52 HOH HOH . 
D 4 HOH A 84 684 60 HOH HOH . 
D 4 HOH A 85 685 78 HOH HOH . 
D 4 HOH A 86 686 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 0.621 -15.793 0.751 1 28.55 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . C 3 0.077 -15.372 2.015 1 25.93 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . C 3 1.974 -15.14 0.459 1 31.68 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . C 3 2.815 -15.141 1.625 1 30.36 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . C 3 2.673 -15.856 -0.706 1 32.59 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . C 3 4.032 -16.214 -0.388 1 35.8 ? O3 GOL 502 A 1 
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_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
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