data_5DFM
#
_model_server_result.job_id            g3HaGgfQChKIMoy7rW_fuQ 
_model_server_result.datetime_utc      '2025-04-12 23:30:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":605}' 
#
_entry.id    5DFM 
#
_exptl.entry_id    5DFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DFM 
_cell.length_a            150.6 
_cell.length_b            150.6 
_cell.length_c            150.6 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,U 1 1 
B,D,K,L,M,N,O,P,Q,R,S,T,V 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 3 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_478 z-1/2,-x+5/2,-y+3 0 0 1 -1 0 0 0 -1 0 -75.3 376.5 451.8 
3 'crystal symmetry operation' 12_785 -y+5/2,-z+3,x+1/2 0 -1 0 0 0 -1 1 0 0 376.5 451.8 75.3 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   GLC 
_pdbx_entity_branch_link.comp_id_2                   GLC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C GLC 1 C 1 GLC C 1 MAL 
2 n C GLC 2 C 2 GLC C 1 MAL 
2 n D GLC 1 D 1 GLC C 2 MAL 
2 n D GLC 2 D 2 GLC C 2 MAL 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 sing 
covale ? covale2 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 327 n n 
S O2 SO4 doub 328 n n 
S O3 SO4 sing 329 n n 
S O4 SO4 sing 330 n n 
#
_atom_sites.entry_id                     5DFM 
_atom_sites.fract_transf_matrix[1][1]    0.00664 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00664 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00664 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 602 2 SO4 SO4 . 
F 3 SO4 A 1 603 3 SO4 SO4 . 
G 3 SO4 A 1 604 6 SO4 SO4 . 
H 3 SO4 A 1 605 9 SO4 SO4 . 
I 3 SO4 A 1 606 14 SO4 SO4 . 
J 4 GOL A 1 607 1 GOL GOL . 
K 3 SO4 B 1 602 1 SO4 SO4 . 
L 3 SO4 B 1 603 4 SO4 SO4 . 
M 3 SO4 B 1 604 5 SO4 SO4 . 
N 3 SO4 B 1 605 7 SO4 SO4 . 
O 3 SO4 B 1 606 8 SO4 SO4 . 
P 3 SO4 B 1 607 11 SO4 SO4 . 
Q 3 SO4 B 1 608 12 SO4 SO4 . 
R 3 SO4 B 1 609 13 SO4 SO4 . 
S 3 SO4 B 1 610 15 SO4 SO4 . 
T 3 SO4 B 1 611 16 SO4 SO4 . 
U 5 HOH A 1 701 58 HOH HOH . 
U 5 HOH A 2 702 52 HOH HOH . 
U 5 HOH A 3 703 68 HOH HOH . 
U 5 HOH A 4 704 3 HOH HOH . 
U 5 HOH A 5 705 42 HOH HOH . 
U 5 HOH A 6 706 61 HOH HOH . 
U 5 HOH A 7 707 12 HOH HOH . 
U 5 HOH A 8 708 9 HOH HOH . 
U 5 HOH A 9 709 79 HOH HOH . 
U 5 HOH A 10 710 2 HOH HOH . 
U 5 HOH A 11 711 50 HOH HOH . 
U 5 HOH A 12 712 45 HOH HOH . 
U 5 HOH A 13 713 5 HOH HOH . 
U 5 HOH A 14 714 23 HOH HOH . 
U 5 HOH A 15 715 47 HOH HOH . 
U 5 HOH A 16 716 57 HOH HOH . 
U 5 HOH A 17 717 13 HOH HOH . 
U 5 HOH A 18 718 63 HOH HOH . 
U 5 HOH A 19 719 15 HOH HOH . 
U 5 HOH A 20 720 31 HOH HOH . 
U 5 HOH A 21 721 19 HOH HOH . 
U 5 HOH A 22 722 38 HOH HOH . 
U 5 HOH A 23 723 28 HOH HOH . 
U 5 HOH A 24 724 46 HOH HOH . 
U 5 HOH A 25 725 65 HOH HOH . 
U 5 HOH A 26 726 55 HOH HOH . 
U 5 HOH A 27 727 27 HOH HOH . 
U 5 HOH A 28 728 24 HOH HOH . 
U 5 HOH A 29 729 69 HOH HOH . 
U 5 HOH A 30 730 25 HOH HOH . 
U 5 HOH A 31 731 17 HOH HOH . 
U 5 HOH A 32 732 74 HOH HOH . 
U 5 HOH A 33 733 11 HOH HOH . 
U 5 HOH A 34 734 21 HOH HOH . 
U 5 HOH A 35 735 70 HOH HOH . 
U 5 HOH A 36 736 43 HOH HOH . 
U 5 HOH A 37 737 36 HOH HOH . 
U 5 HOH A 38 738 34 HOH HOH . 
U 5 HOH A 39 739 77 HOH HOH . 
U 5 HOH A 40 740 76 HOH HOH . 
U 5 HOH A 41 741 60 HOH HOH . 
U 5 HOH A 42 742 48 HOH HOH . 
U 5 HOH A 43 743 1 HOH HOH . 
U 5 HOH A 44 744 10 HOH HOH . 
U 5 HOH A 45 745 75 HOH HOH . 
V 5 HOH B 1 701 33 HOH HOH . 
V 5 HOH B 2 702 54 HOH HOH . 
V 5 HOH B 3 703 56 HOH HOH . 
V 5 HOH B 4 704 64 HOH HOH . 
V 5 HOH B 5 705 72 HOH HOH . 
V 5 HOH B 6 706 22 HOH HOH . 
V 5 HOH B 7 707 4 HOH HOH . 
V 5 HOH B 8 708 8 HOH HOH . 
V 5 HOH B 9 709 14 HOH HOH . 
V 5 HOH B 10 710 30 HOH HOH . 
V 5 HOH B 11 711 29 HOH HOH . 
V 5 HOH B 12 712 41 HOH HOH . 
V 5 HOH B 13 713 51 HOH HOH . 
V 5 HOH B 14 714 37 HOH HOH . 
V 5 HOH B 15 715 44 HOH HOH . 
V 5 HOH B 16 716 18 HOH HOH . 
V 5 HOH B 17 717 32 HOH HOH . 
V 5 HOH B 18 718 16 HOH HOH . 
V 5 HOH B 19 719 40 HOH HOH . 
V 5 HOH B 20 720 20 HOH HOH . 
V 5 HOH B 21 721 66 HOH HOH . 
V 5 HOH B 22 722 6 HOH HOH . 
V 5 HOH B 23 723 26 HOH HOH . 
V 5 HOH B 24 724 49 HOH HOH . 
V 5 HOH B 25 725 7 HOH HOH . 
V 5 HOH B 26 726 35 HOH HOH . 
V 5 HOH B 27 727 62 HOH HOH . 
V 5 HOH B 28 728 39 HOH HOH . 
V 5 HOH B 29 729 71 HOH HOH . 
V 5 HOH B 30 730 73 HOH HOH . 
V 5 HOH B 31 731 59 HOH HOH . 
V 5 HOH B 32 732 78 HOH HOH . 
V 5 HOH B 33 733 53 HOH HOH . 
V 5 HOH B 34 734 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . N 3 184.942 175.775 270.736 1 106.14 ? S SO4 605 B 1 
HETATM 2 O O1 SO4 . . . N 3 185.735 176.463 269.717 1 100.14 ? O1 SO4 605 B 1 
HETATM 3 O O2 SO4 . . . N 3 183.735 175.219 270.131 1 106.72 ? O2 SO4 605 B 1 
HETATM 4 O O3 SO4 . . . N 3 185.742 174.703 271.321 1 103.61 ? O3 SO4 605 B 1 
HETATM 5 O O4 SO4 . . . N 3 184.548 176.707 271.789 1 106.88 ? O4 SO4 605 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#