data_5DFP # _model_server_result.job_id CClb8tp7fSQWJYu504zARw _model_server_result.datetime_utc '2024-11-15 16:25:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5DFP # _exptl.entry_id 5DFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DFP _cell.length_a 51.965 _cell.length_b 103.819 _cell.length_c 123.542 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 174 A SER 422 1_555 A N TPO 175 A TPO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 175 A TPO 423 1_555 A N MET 176 A MET 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 156 n n S C1 DMS sing 157 n n S C2 DMS sing 158 n n C1 H11 DMS sing 159 n n C1 H12 DMS sing 160 n n C1 H13 DMS sing 161 n n C2 H21 DMS sing 162 n n C2 H22 DMS sing 163 n n C2 H23 DMS sing 164 n n # _atom_sites.entry_id 5DFP _atom_sites.fract_transf_matrix[1][1] 0.019244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 59U A 1 601 1 59U LIG . C 3 DMS A 1 602 1 DMS DMS . D 4 HOH A 1 701 51 HOH HOH . D 4 HOH A 2 702 138 HOH HOH . D 4 HOH A 3 703 151 HOH HOH . D 4 HOH A 4 704 103 HOH HOH . D 4 HOH A 5 705 304 HOH HOH . D 4 HOH A 6 706 67 HOH HOH . D 4 HOH A 7 707 59 HOH HOH . D 4 HOH A 8 708 156 HOH HOH . D 4 HOH A 9 709 79 HOH HOH . D 4 HOH A 10 710 93 HOH HOH . D 4 HOH A 11 711 96 HOH HOH . D 4 HOH A 12 712 92 HOH HOH . D 4 HOH A 13 713 163 HOH HOH . D 4 HOH A 14 714 302 HOH HOH . D 4 HOH A 15 715 195 HOH HOH . D 4 HOH A 16 716 66 HOH HOH . D 4 HOH A 17 717 72 HOH HOH . D 4 HOH A 18 718 115 HOH HOH . D 4 HOH A 19 719 9 HOH HOH . D 4 HOH A 20 720 18 HOH HOH . D 4 HOH A 21 721 83 HOH HOH . D 4 HOH A 22 722 119 HOH HOH . D 4 HOH A 23 723 64 HOH HOH . D 4 HOH A 24 724 61 HOH HOH . D 4 HOH A 25 725 198 HOH HOH . D 4 HOH A 26 726 85 HOH HOH . D 4 HOH A 27 727 146 HOH HOH . D 4 HOH A 28 728 45 HOH HOH . D 4 HOH A 29 729 125 HOH HOH . D 4 HOH A 30 730 35 HOH HOH . D 4 HOH A 31 731 155 HOH HOH . D 4 HOH A 32 732 57 HOH HOH . D 4 HOH A 33 733 142 HOH HOH . D 4 HOH A 34 734 81 HOH HOH . D 4 HOH A 35 735 95 HOH HOH . D 4 HOH A 36 736 1 HOH HOH . D 4 HOH A 37 737 177 HOH HOH . D 4 HOH A 38 738 56 HOH HOH . D 4 HOH A 39 739 118 HOH HOH . D 4 HOH A 40 740 50 HOH HOH . D 4 HOH A 41 741 15 HOH HOH . D 4 HOH A 42 742 75 HOH HOH . D 4 HOH A 43 743 100 HOH HOH . D 4 HOH A 44 744 68 HOH HOH . D 4 HOH A 45 745 90 HOH HOH . D 4 HOH A 46 746 11 HOH HOH . D 4 HOH A 47 747 3 HOH HOH . D 4 HOH A 48 748 82 HOH HOH . D 4 HOH A 49 749 133 HOH HOH . D 4 HOH A 50 750 191 HOH HOH . D 4 HOH A 51 751 4 HOH HOH . D 4 HOH A 52 752 27 HOH HOH . D 4 HOH A 53 753 47 HOH HOH . D 4 HOH A 54 754 20 HOH HOH . D 4 HOH A 55 755 120 HOH HOH . D 4 HOH A 56 756 2 HOH HOH . D 4 HOH A 57 757 6 HOH HOH . D 4 HOH A 58 758 86 HOH HOH . D 4 HOH A 59 759 106 HOH HOH . D 4 HOH A 60 760 114 HOH HOH . D 4 HOH A 61 761 111 HOH HOH . D 4 HOH A 62 762 173 HOH HOH . D 4 HOH A 63 763 8 HOH HOH . D 4 HOH A 64 764 108 HOH HOH . D 4 HOH A 65 765 176 HOH HOH . D 4 HOH A 66 766 5 HOH HOH . D 4 HOH A 67 767 131 HOH HOH . D 4 HOH A 68 768 48 HOH HOH . D 4 HOH A 69 769 24 HOH HOH . D 4 HOH A 70 770 28 HOH HOH . D 4 HOH A 71 771 63 HOH HOH . D 4 HOH A 72 772 13 HOH HOH . D 4 HOH A 73 773 175 HOH HOH . D 4 HOH A 74 774 89 HOH HOH . D 4 HOH A 75 775 44 HOH HOH . D 4 HOH A 76 776 153 HOH HOH . D 4 HOH A 77 777 70 HOH HOH . D 4 HOH A 78 778 52 HOH HOH . D 4 HOH A 79 779 174 HOH HOH . D 4 HOH A 80 780 32 HOH HOH . D 4 HOH A 81 781 23 HOH HOH . D 4 HOH A 82 782 33 HOH HOH . D 4 HOH A 83 783 17 HOH HOH . D 4 HOH A 84 784 162 HOH HOH . D 4 HOH A 85 785 192 HOH HOH . D 4 HOH A 86 786 43 HOH HOH . D 4 HOH A 87 787 87 HOH HOH . D 4 HOH A 88 788 39 HOH HOH . D 4 HOH A 89 789 104 HOH HOH . D 4 HOH A 90 790 78 HOH HOH . D 4 HOH A 91 791 139 HOH HOH . D 4 HOH A 92 792 159 HOH HOH . D 4 HOH A 93 793 107 HOH HOH . D 4 HOH A 94 794 105 HOH HOH . D 4 HOH A 95 795 148 HOH HOH . D 4 HOH A 96 796 171 HOH HOH . D 4 HOH A 97 797 84 HOH HOH . D 4 HOH A 98 798 25 HOH HOH . D 4 HOH A 99 799 76 HOH HOH . D 4 HOH A 100 800 38 HOH HOH . D 4 HOH A 101 801 307 HOH HOH . D 4 HOH A 102 802 166 HOH HOH . D 4 HOH A 103 803 12 HOH HOH . D 4 HOH A 104 804 112 HOH HOH . D 4 HOH A 105 805 126 HOH HOH . D 4 HOH A 106 806 145 HOH HOH . D 4 HOH A 107 807 42 HOH HOH . D 4 HOH A 108 808 152 HOH HOH . D 4 HOH A 109 809 55 HOH HOH . D 4 HOH A 110 810 123 HOH HOH . D 4 HOH A 111 811 170 HOH HOH . D 4 HOH A 112 812 41 HOH HOH . D 4 HOH A 113 813 80 HOH HOH . D 4 HOH A 114 814 74 HOH HOH . D 4 HOH A 115 815 109 HOH HOH . D 4 HOH A 116 816 305 HOH HOH . D 4 HOH A 117 817 7 HOH HOH . D 4 HOH A 118 818 306 HOH HOH . D 4 HOH A 119 819 130 HOH HOH . D 4 HOH A 120 820 60 HOH HOH . D 4 HOH A 121 821 301 HOH HOH . D 4 HOH A 122 822 110 HOH HOH . D 4 HOH A 123 823 94 HOH HOH . D 4 HOH A 124 824 140 HOH HOH . D 4 HOH A 125 825 16 HOH HOH . D 4 HOH A 126 826 19 HOH HOH . D 4 HOH A 127 827 37 HOH HOH . D 4 HOH A 128 828 14 HOH HOH . D 4 HOH A 129 829 190 HOH HOH . D 4 HOH A 130 830 121 HOH HOH . D 4 HOH A 131 831 21 HOH HOH . D 4 HOH A 132 832 193 HOH HOH . D 4 HOH A 133 833 29 HOH HOH . D 4 HOH A 134 834 88 HOH HOH . D 4 HOH A 135 835 30 HOH HOH . D 4 HOH A 136 836 141 HOH HOH . D 4 HOH A 137 837 169 HOH HOH . D 4 HOH A 138 838 117 HOH HOH . D 4 HOH A 139 839 91 HOH HOH . D 4 HOH A 140 840 143 HOH HOH . D 4 HOH A 141 841 99 HOH HOH . D 4 HOH A 142 842 161 HOH HOH . D 4 HOH A 143 843 137 HOH HOH . D 4 HOH A 144 844 180 HOH HOH . D 4 HOH A 145 845 69 HOH HOH . D 4 HOH A 146 846 22 HOH HOH . D 4 HOH A 147 847 54 HOH HOH . D 4 HOH A 148 848 10 HOH HOH . D 4 HOH A 149 849 113 HOH HOH . D 4 HOH A 150 850 58 HOH HOH . D 4 HOH A 151 851 77 HOH HOH . D 4 HOH A 152 852 36 HOH HOH . D 4 HOH A 153 853 129 HOH HOH . D 4 HOH A 154 854 62 HOH HOH . D 4 HOH A 155 855 49 HOH HOH . D 4 HOH A 156 856 181 HOH HOH . D 4 HOH A 157 857 172 HOH HOH . D 4 HOH A 158 858 102 HOH HOH . D 4 HOH A 159 859 200 HOH HOH . D 4 HOH A 160 860 178 HOH HOH . D 4 HOH A 161 861 135 HOH HOH . D 4 HOH A 162 862 164 HOH HOH . D 4 HOH A 163 863 73 HOH HOH . D 4 HOH A 164 864 182 HOH HOH . D 4 HOH A 165 865 34 HOH HOH . D 4 HOH A 166 866 122 HOH HOH . D 4 HOH A 167 867 71 HOH HOH . D 4 HOH A 168 868 201 HOH HOH . D 4 HOH A 169 869 132 HOH HOH . D 4 HOH A 170 870 184 HOH HOH . D 4 HOH A 171 871 147 HOH HOH . D 4 HOH A 172 872 136 HOH HOH . D 4 HOH A 173 873 98 HOH HOH . D 4 HOH A 174 874 303 HOH HOH . D 4 HOH A 175 875 186 HOH HOH . D 4 HOH A 176 876 101 HOH HOH . D 4 HOH A 177 877 196 HOH HOH . D 4 HOH A 178 878 124 HOH HOH . D 4 HOH A 179 879 26 HOH HOH . D 4 HOH A 180 880 134 HOH HOH . D 4 HOH A 181 881 40 HOH HOH . D 4 HOH A 182 882 97 HOH HOH . D 4 HOH A 183 883 167 HOH HOH . D 4 HOH A 184 884 127 HOH HOH . D 4 HOH A 185 885 187 HOH HOH . D 4 HOH A 186 886 144 HOH HOH . D 4 HOH A 187 887 150 HOH HOH . D 4 HOH A 188 888 168 HOH HOH . D 4 HOH A 189 889 128 HOH HOH . D 4 HOH A 190 890 46 HOH HOH . D 4 HOH A 191 891 31 HOH HOH . D 4 HOH A 192 892 116 HOH HOH . D 4 HOH A 193 893 185 HOH HOH . D 4 HOH A 194 894 165 HOH HOH . D 4 HOH A 195 895 158 HOH HOH . D 4 HOH A 196 896 179 HOH HOH . D 4 HOH A 197 897 197 HOH HOH . D 4 HOH A 198 898 183 HOH HOH . D 4 HOH A 199 899 65 HOH HOH . D 4 HOH A 200 900 154 HOH HOH . D 4 HOH A 201 901 189 HOH HOH . D 4 HOH A 202 902 157 HOH HOH . D 4 HOH A 203 903 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 4.914 33.149 -15.039 1 53.94 ? S DMS 602 A 1 HETATM 2 O O DMS . . . C 3 4.67 34.317 -15.908 1 45.89 ? O DMS 602 A 1 HETATM 3 C C1 DMS . . . C 3 6.62 32.959 -14.616 1 15.18 ? C1 DMS 602 A 1 HETATM 4 C C2 DMS . . . C 3 4.342 31.698 -15.861 1 21.54 ? C2 DMS 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #