data_5DG3
#
_model_server_result.job_id            rQVG9VzBAIDc5dpXm1e5ng 
_model_server_result.datetime_utc      '2024-11-08 03:31:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dg3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":302}' 
#
_entry.id    5DG3 
#
_exptl.entry_id    5DG3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DG3 
_cell.length_a            79.963 
_cell.length_b            83.328 
_cell.length_c            220.369 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DG3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,L,M,N 1 1 
D,I,O 2 1 
F,Q 2 2 
E,J,K,P 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x+1/2,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 39.9815 0 -110.1845 
3 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 -39.9815 -41.664 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 260 n n 
P O2 PO4 sing 261 n n 
P O3 PO4 sing 262 n n 
P O4 PO4 sing 263 n n 
#
_atom_sites.entry_id                     5DG3 
_atom_sites.fract_transf_matrix[1][1]    0.012506 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012001 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004538 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 U21 B 1 301 301 U21 U21 . 
H 2 U21 C 1 301 301 U21 U21 . 
I 2 U21 D 1 301 301 U21 U21 . 
J 2 U21 E 1 301 301 U21 U21 . 
K 3 PO4 E 1 302 302 PO4 PO4 . 
L 4 HOH A 1 301 302 HOH HOH . 
L 4 HOH A 2 302 301 HOH HOH . 
L 4 HOH A 3 303 305 HOH HOH . 
L 4 HOH A 4 304 303 HOH HOH . 
L 4 HOH A 5 305 315 HOH HOH . 
L 4 HOH A 6 306 307 HOH HOH . 
L 4 HOH A 7 307 306 HOH HOH . 
L 4 HOH A 8 308 308 HOH HOH . 
L 4 HOH A 9 309 309 HOH HOH . 
L 4 HOH A 10 310 312 HOH HOH . 
L 4 HOH A 11 311 313 HOH HOH . 
L 4 HOH A 12 312 314 HOH HOH . 
L 4 HOH A 13 313 317 HOH HOH . 
L 4 HOH A 14 314 304 HOH HOH . 
L 4 HOH A 15 315 321 HOH HOH . 
L 4 HOH A 16 316 316 HOH HOH . 
L 4 HOH A 17 317 311 HOH HOH . 
L 4 HOH A 18 318 318 HOH HOH . 
L 4 HOH A 19 319 325 HOH HOH . 
L 4 HOH A 20 320 320 HOH HOH . 
L 4 HOH A 21 321 319 HOH HOH . 
L 4 HOH A 22 322 323 HOH HOH . 
L 4 HOH A 23 323 322 HOH HOH . 
L 4 HOH A 24 324 326 HOH HOH . 
L 4 HOH A 25 325 324 HOH HOH . 
L 4 HOH A 26 326 335 HOH HOH . 
L 4 HOH A 27 327 327 HOH HOH . 
L 4 HOH A 28 328 329 HOH HOH . 
L 4 HOH A 29 329 328 HOH HOH . 
L 4 HOH A 30 330 333 HOH HOH . 
L 4 HOH A 31 331 330 HOH HOH . 
L 4 HOH A 32 332 334 HOH HOH . 
L 4 HOH A 33 333 331 HOH HOH . 
L 4 HOH A 34 334 310 HOH HOH . 
L 4 HOH A 35 335 332 HOH HOH . 
L 4 HOH A 36 336 338 HOH HOH . 
L 4 HOH A 37 337 337 HOH HOH . 
L 4 HOH A 38 338 339 HOH HOH . 
L 4 HOH A 39 339 344 HOH HOH . 
L 4 HOH A 40 340 341 HOH HOH . 
L 4 HOH A 41 341 343 HOH HOH . 
L 4 HOH A 42 342 336 HOH HOH . 
L 4 HOH A 43 343 340 HOH HOH . 
L 4 HOH A 44 344 346 HOH HOH . 
L 4 HOH A 45 345 345 HOH HOH . 
L 4 HOH A 46 346 342 HOH HOH . 
L 4 HOH A 47 347 349 HOH HOH . 
L 4 HOH A 48 348 348 HOH HOH . 
L 4 HOH A 49 349 347 HOH HOH . 
L 4 HOH A 50 350 350 HOH HOH . 
L 4 HOH A 51 351 351 HOH HOH . 
L 4 HOH A 52 352 353 HOH HOH . 
L 4 HOH A 53 353 352 HOH HOH . 
L 4 HOH A 54 354 354 HOH HOH . 
L 4 HOH A 55 355 355 HOH HOH . 
M 4 HOH B 1 401 402 HOH HOH . 
M 4 HOH B 2 402 403 HOH HOH . 
M 4 HOH B 3 403 404 HOH HOH . 
M 4 HOH B 4 404 401 HOH HOH . 
M 4 HOH B 5 405 406 HOH HOH . 
M 4 HOH B 6 406 410 HOH HOH . 
M 4 HOH B 7 407 407 HOH HOH . 
M 4 HOH B 8 408 409 HOH HOH . 
M 4 HOH B 9 409 421 HOH HOH . 
M 4 HOH B 10 410 411 HOH HOH . 
M 4 HOH B 11 411 417 HOH HOH . 
M 4 HOH B 12 412 415 HOH HOH . 
M 4 HOH B 13 413 414 HOH HOH . 
M 4 HOH B 14 414 412 HOH HOH . 
M 4 HOH B 15 415 405 HOH HOH . 
M 4 HOH B 16 416 408 HOH HOH . 
M 4 HOH B 17 417 413 HOH HOH . 
M 4 HOH B 18 418 419 HOH HOH . 
M 4 HOH B 19 419 416 HOH HOH . 
M 4 HOH B 20 420 423 HOH HOH . 
M 4 HOH B 21 421 422 HOH HOH . 
M 4 HOH B 22 422 424 HOH HOH . 
M 4 HOH B 23 423 420 HOH HOH . 
M 4 HOH B 24 424 418 HOH HOH . 
M 4 HOH B 25 425 426 HOH HOH . 
M 4 HOH B 26 426 427 HOH HOH . 
M 4 HOH B 27 427 429 HOH HOH . 
M 4 HOH B 28 428 425 HOH HOH . 
M 4 HOH B 29 429 430 HOH HOH . 
M 4 HOH B 30 430 428 HOH HOH . 
M 4 HOH B 31 431 431 HOH HOH . 
M 4 HOH B 32 432 432 HOH HOH . 
M 4 HOH B 33 433 433 HOH HOH . 
M 4 HOH B 34 434 434 HOH HOH . 
M 4 HOH B 35 435 435 HOH HOH . 
N 4 HOH C 1 401 402 HOH HOH . 
N 4 HOH C 2 402 403 HOH HOH . 
N 4 HOH C 3 403 404 HOH HOH . 
N 4 HOH C 4 404 407 HOH HOH . 
N 4 HOH C 5 405 408 HOH HOH . 
N 4 HOH C 6 406 406 HOH HOH . 
N 4 HOH C 7 407 405 HOH HOH . 
N 4 HOH C 8 408 409 HOH HOH . 
N 4 HOH C 9 409 415 HOH HOH . 
N 4 HOH C 10 410 411 HOH HOH . 
N 4 HOH C 11 411 412 HOH HOH . 
N 4 HOH C 12 412 413 HOH HOH . 
N 4 HOH C 13 413 410 HOH HOH . 
N 4 HOH C 14 414 414 HOH HOH . 
N 4 HOH C 15 415 416 HOH HOH . 
N 4 HOH C 16 416 419 HOH HOH . 
N 4 HOH C 17 417 418 HOH HOH . 
N 4 HOH C 18 418 417 HOH HOH . 
N 4 HOH C 19 419 420 HOH HOH . 
N 4 HOH C 20 420 421 HOH HOH . 
N 4 HOH C 21 421 423 HOH HOH . 
N 4 HOH C 22 422 425 HOH HOH . 
N 4 HOH C 23 423 422 HOH HOH . 
N 4 HOH C 24 424 424 HOH HOH . 
N 4 HOH C 25 425 426 HOH HOH . 
N 4 HOH C 26 426 428 HOH HOH . 
N 4 HOH C 27 427 427 HOH HOH . 
N 4 HOH C 28 428 429 HOH HOH . 
N 4 HOH C 29 429 430 HOH HOH . 
N 4 HOH C 30 430 432 HOH HOH . 
N 4 HOH C 31 431 431 HOH HOH . 
O 4 HOH D 1 401 401 HOH HOH . 
O 4 HOH D 2 402 402 HOH HOH . 
O 4 HOH D 3 403 403 HOH HOH . 
O 4 HOH D 4 404 404 HOH HOH . 
O 4 HOH D 5 405 406 HOH HOH . 
O 4 HOH D 6 406 408 HOH HOH . 
O 4 HOH D 7 407 407 HOH HOH . 
O 4 HOH D 8 408 409 HOH HOH . 
O 4 HOH D 9 409 410 HOH HOH . 
O 4 HOH D 10 410 411 HOH HOH . 
O 4 HOH D 11 411 416 HOH HOH . 
O 4 HOH D 12 412 412 HOH HOH . 
O 4 HOH D 13 413 420 HOH HOH . 
O 4 HOH D 14 414 414 HOH HOH . 
O 4 HOH D 15 415 422 HOH HOH . 
O 4 HOH D 16 416 417 HOH HOH . 
O 4 HOH D 17 417 419 HOH HOH . 
O 4 HOH D 18 418 423 HOH HOH . 
O 4 HOH D 19 419 418 HOH HOH . 
O 4 HOH D 20 420 421 HOH HOH . 
O 4 HOH D 21 421 405 HOH HOH . 
O 4 HOH D 22 422 424 HOH HOH . 
O 4 HOH D 23 423 425 HOH HOH . 
O 4 HOH D 24 424 430 HOH HOH . 
O 4 HOH D 25 425 413 HOH HOH . 
O 4 HOH D 26 426 427 HOH HOH . 
O 4 HOH D 27 427 428 HOH HOH . 
O 4 HOH D 28 428 426 HOH HOH . 
O 4 HOH D 29 429 415 HOH HOH . 
O 4 HOH D 30 430 431 HOH HOH . 
O 4 HOH D 31 431 429 HOH HOH . 
O 4 HOH D 32 432 434 HOH HOH . 
O 4 HOH D 33 433 435 HOH HOH . 
O 4 HOH D 34 434 436 HOH HOH . 
O 4 HOH D 35 435 439 HOH HOH . 
O 4 HOH D 36 436 433 HOH HOH . 
O 4 HOH D 37 437 438 HOH HOH . 
O 4 HOH D 38 438 437 HOH HOH . 
O 4 HOH D 39 439 441 HOH HOH . 
O 4 HOH D 40 440 440 HOH HOH . 
O 4 HOH D 41 441 443 HOH HOH . 
O 4 HOH D 42 442 442 HOH HOH . 
O 4 HOH D 43 443 444 HOH HOH . 
O 4 HOH D 44 444 445 HOH HOH . 
O 4 HOH D 45 445 446 HOH HOH . 
O 4 HOH D 46 446 447 HOH HOH . 
P 4 HOH E 1 401 402 HOH HOH . 
P 4 HOH E 2 402 403 HOH HOH . 
P 4 HOH E 3 403 401 HOH HOH . 
P 4 HOH E 4 404 404 HOH HOH . 
P 4 HOH E 5 405 405 HOH HOH . 
P 4 HOH E 6 406 408 HOH HOH . 
P 4 HOH E 7 407 407 HOH HOH . 
P 4 HOH E 8 408 410 HOH HOH . 
P 4 HOH E 9 409 406 HOH HOH . 
P 4 HOH E 10 410 413 HOH HOH . 
P 4 HOH E 11 411 414 HOH HOH . 
P 4 HOH E 12 412 409 HOH HOH . 
P 4 HOH E 13 413 411 HOH HOH . 
P 4 HOH E 14 414 412 HOH HOH . 
P 4 HOH E 15 415 415 HOH HOH . 
P 4 HOH E 16 416 416 HOH HOH . 
P 4 HOH E 17 417 417 HOH HOH . 
P 4 HOH E 18 418 420 HOH HOH . 
P 4 HOH E 19 419 418 HOH HOH . 
P 4 HOH E 20 420 419 HOH HOH . 
P 4 HOH E 21 421 421 HOH HOH . 
P 4 HOH E 22 422 422 HOH HOH . 
P 4 HOH E 23 423 423 HOH HOH . 
Q 4 HOH F 1 301 301 HOH HOH . 
Q 4 HOH F 2 302 302 HOH HOH . 
Q 4 HOH F 3 303 305 HOH HOH . 
Q 4 HOH F 4 304 303 HOH HOH . 
Q 4 HOH F 5 305 311 HOH HOH . 
Q 4 HOH F 6 306 304 HOH HOH . 
Q 4 HOH F 7 307 307 HOH HOH . 
Q 4 HOH F 8 308 308 HOH HOH . 
Q 4 HOH F 9 309 306 HOH HOH . 
Q 4 HOH F 10 310 314 HOH HOH . 
Q 4 HOH F 11 311 310 HOH HOH . 
Q 4 HOH F 12 312 312 HOH HOH . 
Q 4 HOH F 13 313 319 HOH HOH . 
Q 4 HOH F 14 314 313 HOH HOH . 
Q 4 HOH F 15 315 309 HOH HOH . 
Q 4 HOH F 16 316 318 HOH HOH . 
Q 4 HOH F 17 317 315 HOH HOH . 
Q 4 HOH F 18 318 324 HOH HOH . 
Q 4 HOH F 19 319 316 HOH HOH . 
Q 4 HOH F 20 320 322 HOH HOH . 
Q 4 HOH F 21 321 323 HOH HOH . 
Q 4 HOH F 22 322 321 HOH HOH . 
Q 4 HOH F 23 323 328 HOH HOH . 
Q 4 HOH F 24 324 325 HOH HOH . 
Q 4 HOH F 25 325 317 HOH HOH . 
Q 4 HOH F 26 326 320 HOH HOH . 
Q 4 HOH F 27 327 326 HOH HOH . 
Q 4 HOH F 28 328 327 HOH HOH . 
Q 4 HOH F 29 329 329 HOH HOH . 
Q 4 HOH F 30 330 330 HOH HOH . 
Q 4 HOH F 31 331 331 HOH HOH . 
Q 4 HOH F 32 332 336 HOH HOH . 
Q 4 HOH F 33 333 333 HOH HOH . 
Q 4 HOH F 34 334 334 HOH HOH . 
Q 4 HOH F 35 335 332 HOH HOH . 
Q 4 HOH F 36 336 338 HOH HOH . 
Q 4 HOH F 37 337 335 HOH HOH . 
Q 4 HOH F 38 338 337 HOH HOH . 
Q 4 HOH F 39 339 340 HOH HOH . 
Q 4 HOH F 40 340 339 HOH HOH . 
Q 4 HOH F 41 341 341 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . K 3 52.922 -19.219 2.293 1 50 ? P PO4 302 E 1 
HETATM 2 O O1 PO4 . . . K 3 52.507 -19.453 0.907 1 50 ? O1 PO4 302 E 1 
HETATM 3 O O2 PO4 . . . K 3 54.385 -19.318 2.479 1 50 ? O2 PO4 302 E 1 
HETATM 4 O O3 PO4 . . . K 3 52.252 -20.282 3.06 1 49.82 ? O3 PO4 302 E 1 
HETATM 5 O O4 PO4 . . . K 3 52.465 -17.841 2.6 1 47.35 ? O4 PO4 302 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#