data_5DG5 # _model_server_result.job_id M5Ker355o1M2Ycg7UxRafg _model_server_result.datetime_utc '2024-11-13 06:22:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dg5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1401}' # _entry.id 5DG5 # _exptl.entry_id 5DG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.464 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "N-(2,5-difluoro-4-{[2-(1-methyl-1H-pyrazol-4-yl)pyridin-4-yl]oxy}phenyl)-N'-(4-fluorophenyl)cyclopropane-1,1-dicarboxam ide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.92 _cell.angle_gamma 90 _cell.entry_id 5DG5 _cell.length_a 37.13 _cell.length_b 115.88 _cell.length_c 90.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H20 F3 N5 O3' _chem_comp.formula_weight 507.464 _chem_comp.id 5B4 _chem_comp.mon_nstd_flag . _chem_comp.name "N-(2,5-difluoro-4-{[2-(1-methyl-1H-pyrazol-4-yl)pyridin-4-yl]oxy}phenyl)-N'-(4-fluorophenyl)cyclopropane-1,1-dicarboxam ide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ALTIRATINIB ANALOG DP-4157' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C35 C36 5B4 doub 1 n y C35 C34 5B4 sing 2 n y F37 C34 5B4 sing 3 n n C36 C31 5B4 sing 4 n y C34 C33 5B4 doub 5 n y C31 N30 5B4 sing 6 n n C31 C32 5B4 doub 7 n y C33 C32 5B4 sing 8 n y N30 C26 5B4 sing 9 n n C28 C25 5B4 sing 10 n n C28 C29 5B4 sing 11 n n C26 C25 5B4 sing 12 n n C26 O27 5B4 doub 13 n n C25 C29 5B4 sing 14 n n C25 C23 5B4 sing 15 n n C23 N22 5B4 sing 16 n n C23 O24 5B4 doub 17 n n N22 C5 5B4 sing 18 n n F8 C4 5B4 sing 19 n n C5 C4 5B4 doub 20 n y C5 C6 5B4 sing 21 n y C4 C3 5B4 sing 22 n y C6 C1 5B4 doub 23 n y C3 C2 5B4 doub 24 n y C1 C2 5B4 sing 25 n y C1 F7 5B4 sing 26 n n C2 O9 5B4 sing 27 n n O9 C10 5B4 sing 28 n n C10 C11 5B4 doub 29 n y C10 C15 5B4 sing 30 n y C11 C12 5B4 sing 31 n y C15 C14 5B4 doub 32 n y C17 N18 5B4 doub 33 n y C17 C16 5B4 sing 34 n y C12 C16 5B4 sing 35 n n C12 N13 5B4 doub 36 n y N18 N19 5B4 sing 37 n y C14 N13 5B4 sing 38 n y C16 C20 5B4 doub 39 n y N19 C20 5B4 sing 40 n y N19 C21 5B4 sing 41 n n C3 H1 5B4 sing 42 n n C11 H2 5B4 sing 43 n n C14 H3 5B4 sing 44 n n C15 H4 5B4 sing 45 n n C33 H5 5B4 sing 46 n n C32 H6 5B4 sing 47 n n C35 H7 5B4 sing 48 n n C36 H8 5B4 sing 49 n n N30 H9 5B4 sing 50 n n C29 H10 5B4 sing 51 n n C29 H11 5B4 sing 52 n n C28 H12 5B4 sing 53 n n C28 H13 5B4 sing 54 n n N22 H14 5B4 sing 55 n n C6 H15 5B4 sing 56 n n C20 H16 5B4 sing 57 n n C21 H17 5B4 sing 58 n n C21 H18 5B4 sing 59 n n C21 H19 5B4 sing 60 n n C17 H20 5B4 sing 61 n n # _atom_sites.entry_id 5DG5 _atom_sites.fract_transf_matrix[1][1] 0.026932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001372 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5B4 A 1 1401 1 5B4 157 . D 2 5B4 B 1 1401 2 5B4 157 . E 3 HOH A 1 1501 14 HOH HOH . E 3 HOH A 2 1502 17 HOH HOH . E 3 HOH A 3 1503 23 HOH HOH . E 3 HOH A 4 1504 2 HOH HOH . E 3 HOH A 5 1505 28 HOH HOH . E 3 HOH A 6 1506 27 HOH HOH . E 3 HOH A 7 1507 18 HOH HOH . E 3 HOH A 8 1508 24 HOH HOH . E 3 HOH A 9 1509 15 HOH HOH . E 3 HOH A 10 1510 1 HOH HOH . E 3 HOH A 11 1511 6 HOH HOH . E 3 HOH A 12 1512 3 HOH HOH . E 3 HOH A 13 1513 13 HOH HOH . E 3 HOH A 14 1514 25 HOH HOH . E 3 HOH A 15 1515 5 HOH HOH . E 3 HOH A 16 1516 4 HOH HOH . E 3 HOH A 17 1517 21 HOH HOH . E 3 HOH A 18 1518 8 HOH HOH . E 3 HOH A 19 1519 7 HOH HOH . E 3 HOH A 20 1520 26 HOH HOH . E 3 HOH A 21 1521 22 HOH HOH . E 3 HOH A 22 1522 16 HOH HOH . E 3 HOH A 23 1523 29 HOH HOH . F 3 HOH B 1 1501 10 HOH HOH . F 3 HOH B 2 1502 20 HOH HOH . F 3 HOH B 3 1503 31 HOH HOH . F 3 HOH B 4 1504 30 HOH HOH . F 3 HOH B 5 1505 32 HOH HOH . F 3 HOH B 6 1506 33 HOH HOH . F 3 HOH B 7 1507 19 HOH HOH . F 3 HOH B 8 1508 11 HOH HOH . F 3 HOH B 9 1509 9 HOH HOH . F 3 HOH B 10 1510 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5B4 . . . D 2 -19.072 41.028 -40.545 1 31.36 ? C1 5B4 1401 B 1 HETATM 2 C C2 5B4 . . . D 2 -19.344 42.387 -40.369 1 31.27 ? C2 5B4 1401 B 1 HETATM 3 C C3 5B4 . . . D 2 -18.724 43.338 -41.168 1 30.39 ? C3 5B4 1401 B 1 HETATM 4 C C4 5B4 . . . D 2 -17.811 42.942 -42.131 1 30.35 ? C4 5B4 1401 B 1 HETATM 5 C C5 5B4 . . . D 2 -17.511 41.527 -42.324 1 30.78 ? C5 5B4 1401 B 1 HETATM 6 O O9 5B4 . . . D 2 -20.277 42.765 -39.427 1 31.26 ? O9 5B4 1401 B 1 HETATM 7 C C10 5B4 . . . D 2 -20.086 43.827 -38.57 1 30.8 ? C10 5B4 1401 B 1 HETATM 8 C C11 5B4 . . . D 2 -21.164 44.621 -38.208 1 30.37 ? C11 5B4 1401 B 1 HETATM 9 C C12 5B4 . . . D 2 -20.976 45.665 -37.317 1 30.59 ? C12 5B4 1401 B 1 HETATM 10 C C14 5B4 . . . D 2 -18.686 45.174 -37.171 1 29.59 ? C14 5B4 1401 B 1 HETATM 11 C C16 5B4 . . . D 2 -22.106 46.558 -36.95 1 31.47 ? C16 5B4 1401 B 1 HETATM 12 C C15 5B4 . . . D 2 -18.838 44.101 -38.038 1 29.61 ? C15 5B4 1401 B 1 HETATM 13 F F37 5B4 . . . D 2 -10.303 45.209 -47.571 1 40.19 ? F37 5B4 1401 B 1 HETATM 14 C C34 5B4 . . . D 2 -11.038 44.166 -47.15 1 35.62 ? C34 5B4 1401 B 1 HETATM 15 C C33 5B4 . . . D 2 -11.658 44.213 -45.928 1 33.5 ? C33 5B4 1401 B 1 HETATM 16 C C32 5B4 . . . D 2 -12.41 43.139 -45.492 1 34.67 ? C32 5B4 1401 B 1 HETATM 17 C C35 5B4 . . . D 2 -11.157 43.044 -47.945 1 36.47 ? C35 5B4 1401 B 1 HETATM 18 C C36 5B4 . . . D 2 -11.912 41.966 -47.519 1 35.61 ? C36 5B4 1401 B 1 HETATM 19 C C31 5B4 . . . D 2 -12.54 42.003 -46.289 1 34.26 ? C31 5B4 1401 B 1 HETATM 20 N N30 5B4 . . . D 2 -13.341 40.965 -45.933 1 33.8 ? N30 5B4 1401 B 1 HETATM 21 C C26 5B4 . . . D 2 -14.284 41.09 -44.977 1 33.54 ? C26 5B4 1401 B 1 HETATM 22 O O27 5B4 . . . D 2 -14.497 42.13 -44.392 1 33.01 ? O27 5B4 1401 B 1 HETATM 23 C C25 5B4 . . . D 2 -15.08 39.83 -44.591 1 33.37 ? C25 5B4 1401 B 1 HETATM 24 C C29 5B4 . . . D 2 -14.363 38.487 -44.685 1 33.06 ? C29 5B4 1401 B 1 HETATM 25 C C28 5B4 . . . D 2 -15.382 38.887 -45.757 1 33.21 ? C28 5B4 1401 B 1 HETATM 26 C C23 5B4 . . . D 2 -16.243 39.952 -43.614 1 32.75 ? C23 5B4 1401 B 1 HETATM 27 O O24 5B4 . . . D 2 -16.741 38.949 -43.137 1 31.96 ? O24 5B4 1401 B 1 HETATM 28 N N22 5B4 . . . D 2 -16.617 41.208 -43.311 1 32.26 ? N22 5B4 1401 B 1 HETATM 29 C C6 5B4 . . . D 2 -18.16 40.591 -41.522 1 30.46 ? C6 5B4 1401 B 1 HETATM 30 F F7 5B4 . . . D 2 -19.691 40.131 -39.754 1 32.17 ? F7 5B4 1401 B 1 HETATM 31 F F8 5B4 . . . D 2 -17.206 43.844 -42.906 1 30.9 ? F8 5B4 1401 B 1 HETATM 32 N N13 5B4 . . . D 2 -19.738 45.929 -36.831 1 30.04 ? N13 5B4 1401 B 1 HETATM 33 C C20 5B4 . . . D 2 -22.061 47.56 -36 1 32.41 ? C20 5B4 1401 B 1 HETATM 34 N N19 5B4 . . . D 2 -23.241 48.152 -36.022 1 33.55 ? N19 5B4 1401 B 1 HETATM 35 C C21 5B4 . . . D 2 -23.818 49.266 -35.253 1 34.63 ? C21 5B4 1401 B 1 HETATM 36 N N18 5B4 . . . D 2 -24.086 47.596 -36.968 1 32.57 ? N18 5B4 1401 B 1 HETATM 37 C C17 5B4 . . . D 2 -23.374 46.602 -37.557 1 32.41 ? C17 5B4 1401 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #