data_5DGN # _model_server_result.job_id ESGGWithAxB0PzJqulyE0Q _model_server_result.datetime_utc '2024-11-21 18:00:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5DGN # _exptl.entry_id 5DGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 299.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-(naphthalen-1-yl)quinoline-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DGN _cell.length_a 110.462 _cell.length_b 110.462 _cell.length_c 76.371 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.462 110.462 38.1855 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H13 N O2' _chem_comp.formula_weight 299.323 _chem_comp.id 59Y _chem_comp.mon_nstd_flag . _chem_comp.name '8-(naphthalen-1-yl)quinoline-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C15 59Y doub 1 n n O23 C15 59Y sing 2 n n C15 C13 59Y sing 3 n n C13 C12 59Y sing 4 n y C13 N14 59Y doub 5 n y C12 C11 59Y doub 6 n y N14 C9 59Y sing 7 n y C11 C10 59Y sing 8 n y C8 C6 59Y doub 9 n y C8 C7 59Y sing 10 n y C6 C16 59Y sing 11 n y C9 C10 59Y doub 12 n y C9 C1 59Y sing 13 n y C7 C5 59Y doub 14 n y C16 C21 59Y doub 15 n y C16 C17 59Y sing 16 n y C10 C4 59Y sing 17 n y C21 C20 59Y sing 18 n y C5 C17 59Y sing 19 n y C5 C1 59Y sing 20 n n C17 C18 59Y doub 21 n y C20 C19 59Y doub 22 n y C1 C2 59Y doub 23 n y C18 C19 59Y sing 24 n y C4 C3 59Y doub 25 n y C2 C3 59Y sing 26 n y C2 H1 59Y sing 27 n n C3 H2 59Y sing 28 n n C11 H3 59Y sing 29 n n C12 H4 59Y sing 30 n n C18 H5 59Y sing 31 n n C19 H6 59Y sing 32 n n C20 H7 59Y sing 33 n n C21 H8 59Y sing 34 n n C4 H9 59Y sing 35 n n C6 H10 59Y sing 36 n n C7 H11 59Y sing 37 n n C8 H12 59Y sing 38 n n O23 H13 59Y sing 39 n n # _atom_sites.entry_id 5DGN _atom_sites.fract_transf_matrix[1][1] 0.009053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 59Y F 1 401 1 59Y LI1 . C 3 HOH F 1 501 61 HOH HOH . C 3 HOH F 2 502 67 HOH HOH . C 3 HOH F 3 503 51 HOH HOH . C 3 HOH F 4 504 34 HOH HOH . C 3 HOH F 5 505 56 HOH HOH . C 3 HOH F 6 506 12 HOH HOH . C 3 HOH F 7 507 5 HOH HOH . C 3 HOH F 8 508 97 HOH HOH . C 3 HOH F 9 509 10 HOH HOH . C 3 HOH F 10 510 43 HOH HOH . C 3 HOH F 11 511 106 HOH HOH . C 3 HOH F 12 512 13 HOH HOH . C 3 HOH F 13 513 38 HOH HOH . C 3 HOH F 14 514 69 HOH HOH . C 3 HOH F 15 515 88 HOH HOH . C 3 HOH F 16 516 2 HOH HOH . C 3 HOH F 17 517 8 HOH HOH . C 3 HOH F 18 518 17 HOH HOH . C 3 HOH F 19 519 19 HOH HOH . C 3 HOH F 20 520 70 HOH HOH . C 3 HOH F 21 521 42 HOH HOH . C 3 HOH F 22 522 22 HOH HOH . C 3 HOH F 23 523 71 HOH HOH . C 3 HOH F 24 524 47 HOH HOH . C 3 HOH F 25 525 64 HOH HOH . C 3 HOH F 26 526 105 HOH HOH . C 3 HOH F 27 527 94 HOH HOH . C 3 HOH F 28 528 100 HOH HOH . C 3 HOH F 29 529 18 HOH HOH . C 3 HOH F 30 530 27 HOH HOH . C 3 HOH F 31 531 98 HOH HOH . C 3 HOH F 32 532 86 HOH HOH . C 3 HOH F 33 533 6 HOH HOH . C 3 HOH F 34 534 96 HOH HOH . C 3 HOH F 35 535 48 HOH HOH . C 3 HOH F 36 536 7 HOH HOH . C 3 HOH F 37 537 55 HOH HOH . C 3 HOH F 38 538 24 HOH HOH . C 3 HOH F 39 539 35 HOH HOH . C 3 HOH F 40 540 89 HOH HOH . C 3 HOH F 41 541 99 HOH HOH . C 3 HOH F 42 542 31 HOH HOH . C 3 HOH F 43 543 21 HOH HOH . C 3 HOH F 44 544 80 HOH HOH . C 3 HOH F 45 545 52 HOH HOH . C 3 HOH F 46 546 101 HOH HOH . C 3 HOH F 47 547 14 HOH HOH . C 3 HOH F 48 548 28 HOH HOH . C 3 HOH F 49 549 39 HOH HOH . C 3 HOH F 50 550 85 HOH HOH . C 3 HOH F 51 551 50 HOH HOH . C 3 HOH F 52 552 11 HOH HOH . C 3 HOH F 53 553 92 HOH HOH . C 3 HOH F 54 554 4 HOH HOH . C 3 HOH F 55 555 53 HOH HOH . C 3 HOH F 56 556 3 HOH HOH . C 3 HOH F 57 557 25 HOH HOH . C 3 HOH F 58 558 75 HOH HOH . C 3 HOH F 59 559 91 HOH HOH . C 3 HOH F 60 560 65 HOH HOH . C 3 HOH F 61 561 41 HOH HOH . C 3 HOH F 62 562 20 HOH HOH . C 3 HOH F 63 563 73 HOH HOH . C 3 HOH F 64 564 78 HOH HOH . C 3 HOH F 65 565 95 HOH HOH . C 3 HOH F 66 566 83 HOH HOH . C 3 HOH F 67 567 40 HOH HOH . C 3 HOH F 68 568 1 HOH HOH . C 3 HOH F 69 569 59 HOH HOH . C 3 HOH F 70 570 58 HOH HOH . C 3 HOH F 71 571 23 HOH HOH . C 3 HOH F 72 572 82 HOH HOH . C 3 HOH F 73 573 74 HOH HOH . C 3 HOH F 74 574 46 HOH HOH . C 3 HOH F 75 575 16 HOH HOH . C 3 HOH F 76 576 72 HOH HOH . C 3 HOH F 77 577 93 HOH HOH . C 3 HOH F 78 578 104 HOH HOH . C 3 HOH F 79 579 29 HOH HOH . C 3 HOH F 80 580 102 HOH HOH . C 3 HOH F 81 581 81 HOH HOH . C 3 HOH F 82 582 54 HOH HOH . C 3 HOH F 83 583 9 HOH HOH . C 3 HOH F 84 584 26 HOH HOH . C 3 HOH F 85 585 66 HOH HOH . C 3 HOH F 86 586 84 HOH HOH . C 3 HOH F 87 587 79 HOH HOH . C 3 HOH F 88 588 57 HOH HOH . C 3 HOH F 89 589 90 HOH HOH . C 3 HOH F 90 590 30 HOH HOH . C 3 HOH F 91 591 63 HOH HOH . C 3 HOH F 92 592 77 HOH HOH . C 3 HOH F 93 593 32 HOH HOH . C 3 HOH F 94 594 36 HOH HOH . C 3 HOH F 95 595 87 HOH HOH . C 3 HOH F 96 596 15 HOH HOH . C 3 HOH F 97 597 60 HOH HOH . C 3 HOH F 98 598 45 HOH HOH . C 3 HOH F 99 599 103 HOH HOH . C 3 HOH F 100 600 44 HOH HOH . C 3 HOH F 101 601 49 HOH HOH . C 3 HOH F 102 602 37 HOH HOH . C 3 HOH F 103 603 62 HOH HOH . C 3 HOH F 104 604 33 HOH HOH . C 3 HOH F 105 605 68 HOH HOH . C 3 HOH F 106 606 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 59Y . . . B 2 3.441 73.447 28.216 1 68.71 ? C1 59Y 401 F 1 HETATM 2 C C2 59Y . . . B 2 3.04 72.651 29.315 1 68.69 ? C2 59Y 401 F 1 HETATM 3 C C3 59Y . . . B 2 3.715 71.46 29.625 1 67.46 ? C3 59Y 401 F 1 HETATM 4 C C11 59Y . . . B 2 6.332 71.471 26.957 1 68.82 ? C11 59Y 401 F 1 HETATM 5 C C12 59Y . . . B 2 6.731 72.272 25.876 1 68.81 ? C12 59Y 401 F 1 HETATM 6 C C13 59Y . . . B 2 6.015 73.447 25.572 1 70.15 ? C13 59Y 401 F 1 HETATM 7 C C15 59Y . . . B 2 6.435 74.313 24.401 1 71.78 ? C15 59Y 401 F 1 HETATM 8 C C16 59Y . . . B 2 2.38 77.102 27.656 1 61.53 ? C16 59Y 401 F 1 HETATM 9 C C17 59Y . . . B 2 3.215 75.999 27.986 1 63 ? C17 59Y 401 F 1 HETATM 10 C C18 59Y . . . B 2 4.546 76.265 28.414 1 58.7 ? C18 59Y 401 F 1 HETATM 11 C C19 59Y . . . B 2 5.051 77.569 28.469 1 54.57 ? C19 59Y 401 F 1 HETATM 12 C C20 59Y . . . B 2 4.204 78.643 28.166 1 55.18 ? C20 59Y 401 F 1 HETATM 13 C C21 59Y . . . B 2 2.885 78.415 27.737 1 56.83 ? C21 59Y 401 F 1 HETATM 14 C C4 59Y . . . B 2 4.805 71.066 28.831 1 67.97 ? C4 59Y 401 F 1 HETATM 15 C C5 59Y . . . B 2 2.667 74.683 27.899 1 66.49 ? C5 59Y 401 F 1 HETATM 16 C C6 59Y . . . B 2 1.043 76.878 27.253 1 62.88 ? C6 59Y 401 F 1 HETATM 17 C C7 59Y . . . B 2 1.325 74.484 27.494 1 65.09 ? C7 59Y 401 F 1 HETATM 18 C C8 59Y . . . B 2 0.51 75.58 27.172 1 63.72 ? C8 59Y 401 F 1 HETATM 19 C C9 59Y . . . B 2 4.537 73.047 27.41 1 69.7 ? C9 59Y 401 F 1 HETATM 20 C C10 59Y . . . B 2 5.222 71.845 27.733 1 69.21 ? C10 59Y 401 F 1 HETATM 21 N N14 59Y . . . B 2 4.94 73.794 26.333 1 68.95 ? N14 59Y 401 F 1 HETATM 22 O O22 59Y . . . B 2 5.51 74.738 23.536 1 70.4 ? O22 59Y 401 F 1 HETATM 23 O O23 59Y . . . B 2 7.617 74.599 24.244 1 74.02 ? O23 59Y 401 F 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #