data_5DGS # _model_server_result.job_id imY3P3kvuviMz9suzSxxNw _model_server_result.datetime_utc '2024-11-22 22:49:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5DGS # _exptl.entry_id 5DGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.382 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(E)-2-[6-(acetylamino)-8-(naphthalen-1-yl)quinolin-2-yl]ethenyl}phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DGS _cell.length_a 110.962 _cell.length_b 110.962 _cell.length_c 74.772 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.962 110.962 37.386 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H19 N2 O4 P' _chem_comp.formula_weight 418.382 _chem_comp.id 5A7 _chem_comp.mon_nstd_flag . _chem_comp.name '{(E)-2-[6-(acetylamino)-8-(naphthalen-1-yl)quinolin-2-yl]ethenyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P2 5A7 doub 1 n n O4 P2 5A7 sing 2 n n P2 O3 5A7 sing 3 n n P2 C27 5A7 sing 4 n n C27 C26 5A7 doub 5 e n C26 C23 5A7 sing 6 n n C23 C22 5A7 doub 7 n y C23 N24 5A7 sing 8 n y C6 C7 5A7 doub 9 n y C6 C5 5A7 sing 10 n y C7 C10 5A7 sing 11 n y C22 C21 5A7 sing 12 n y N24 C19 5A7 doub 13 n y C5 C8 5A7 doub 14 n y C10 C11 5A7 doub 15 n y C10 C9 5A7 sing 16 n y C11 C12 5A7 sing 17 n y C8 C9 5A7 sing 18 n y C8 C15 5A7 sing 19 n n C21 C20 5A7 doub 20 n y C19 C20 5A7 sing 21 n y C19 C15 5A7 sing 22 n y C9 C14 5A7 doub 23 n y C12 C13 5A7 doub 24 n y C20 C18 5A7 sing 25 n y C15 C16 5A7 doub 26 n y C14 C13 5A7 sing 27 n y C18 C17 5A7 doub 28 n y C16 C17 5A7 sing 29 n y C17 N25 5A7 sing 30 n n N25 C28 5A7 sing 31 n n O30 C28 5A7 doub 32 n n C28 C29 5A7 sing 33 n n O3 H1 5A7 sing 34 n n C11 H2 5A7 sing 35 n n C12 H3 5A7 sing 36 n n C13 H4 5A7 sing 37 n n C14 H5 5A7 sing 38 n n C16 H6 5A7 sing 39 n n C18 H7 5A7 sing 40 n n C21 H8 5A7 sing 41 n n C22 H9 5A7 sing 42 n n C26 H10 5A7 sing 43 n n C27 H11 5A7 sing 44 n n C29 H12 5A7 sing 45 n n C29 H13 5A7 sing 46 n n C29 H14 5A7 sing 47 n n O4 H15 5A7 sing 48 n n C5 H16 5A7 sing 49 n n C6 H17 5A7 sing 50 n n C7 H18 5A7 sing 51 n n N25 H19 5A7 sing 52 n n # _atom_sites.entry_id 5DGS _atom_sites.fract_transf_matrix[1][1] 0.009012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5A7 F 1 401 1 5A7 LI1 . C 3 HOH F 1 501 37 HOH HOH . C 3 HOH F 2 502 2 HOH HOH . C 3 HOH F 3 503 9 HOH HOH . C 3 HOH F 4 504 16 HOH HOH . C 3 HOH F 5 505 25 HOH HOH . C 3 HOH F 6 506 36 HOH HOH . C 3 HOH F 7 507 35 HOH HOH . C 3 HOH F 8 508 15 HOH HOH . C 3 HOH F 9 509 23 HOH HOH . C 3 HOH F 10 510 30 HOH HOH . C 3 HOH F 11 511 22 HOH HOH . C 3 HOH F 12 512 5 HOH HOH . C 3 HOH F 13 513 32 HOH HOH . C 3 HOH F 14 514 45 HOH HOH . C 3 HOH F 15 515 39 HOH HOH . C 3 HOH F 16 516 27 HOH HOH . C 3 HOH F 17 517 7 HOH HOH . C 3 HOH F 18 518 4 HOH HOH . C 3 HOH F 19 519 10 HOH HOH . C 3 HOH F 20 520 18 HOH HOH . C 3 HOH F 21 521 46 HOH HOH . C 3 HOH F 22 522 11 HOH HOH . C 3 HOH F 23 523 38 HOH HOH . C 3 HOH F 24 524 41 HOH HOH . C 3 HOH F 25 525 40 HOH HOH . C 3 HOH F 26 526 14 HOH HOH . C 3 HOH F 27 527 19 HOH HOH . C 3 HOH F 28 528 21 HOH HOH . C 3 HOH F 29 529 48 HOH HOH . C 3 HOH F 30 530 47 HOH HOH . C 3 HOH F 31 531 12 HOH HOH . C 3 HOH F 32 532 42 HOH HOH . C 3 HOH F 33 533 44 HOH HOH . C 3 HOH F 34 534 13 HOH HOH . C 3 HOH F 35 535 1 HOH HOH . C 3 HOH F 36 536 8 HOH HOH . C 3 HOH F 37 537 17 HOH HOH . C 3 HOH F 38 538 28 HOH HOH . C 3 HOH F 39 539 26 HOH HOH . C 3 HOH F 40 540 6 HOH HOH . C 3 HOH F 41 541 43 HOH HOH . C 3 HOH F 42 542 20 HOH HOH . C 3 HOH F 43 543 3 HOH HOH . C 3 HOH F 44 544 33 HOH HOH . C 3 HOH F 45 545 29 HOH HOH . C 3 HOH F 46 546 34 HOH HOH . C 3 HOH F 47 547 31 HOH HOH . C 3 HOH F 48 548 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 5A7 . . . B 2 8.233 73.576 20.844 1 58.87 ? O1 5A7 401 F 1 HETATM 2 O O3 5A7 . . . B 2 9 75.138 22.655 1 59.16 ? O3 5A7 401 F 1 HETATM 3 C C11 5A7 . . . B 2 2.909 78.527 26.671 1 58.02 ? C11 5A7 401 F 1 HETATM 4 C C12 5A7 . . . B 2 4.138 78.75 27.321 1 59.08 ? C12 5A7 401 F 1 HETATM 5 C C13 5A7 . . . B 2 4.847 77.672 27.875 1 59.74 ? C13 5A7 401 F 1 HETATM 6 C C14 5A7 . . . B 2 4.308 76.378 27.811 1 61.49 ? C14 5A7 401 F 1 HETATM 7 C C15 5A7 . . . B 2 3.105 73.589 27.643 1 65.34 ? C15 5A7 401 F 1 HETATM 8 C C16 5A7 . . . B 2 2.488 72.922 28.711 1 66.09 ? C16 5A7 401 F 1 HETATM 9 C C17 5A7 . . . B 2 3.006 71.728 29.251 1 66.34 ? C17 5A7 401 F 1 HETATM 10 C C18 5A7 . . . B 2 4.194 71.209 28.708 1 64.98 ? C18 5A7 401 F 1 HETATM 11 C C19 5A7 . . . B 2 4.27 73.029 27.086 1 66.33 ? C19 5A7 401 F 1 HETATM 12 C C20 5A7 . . . B 2 4.821 71.84 27.627 1 65.25 ? C20 5A7 401 F 1 HETATM 13 C C21 5A7 . . . B 2 6.011 71.332 27.084 1 63.61 ? C21 5A7 401 F 1 HETATM 14 C C22 5A7 . . . B 2 6.602 71.986 25.995 1 64.37 ? C22 5A7 401 F 1 HETATM 15 C C23 5A7 . . . B 2 6.018 73.164 25.487 1 64.74 ? C23 5A7 401 F 1 HETATM 16 C C26 5A7 . . . B 2 6.632 73.965 24.359 1 60.69 ? C26 5A7 401 F 1 HETATM 17 C C27 5A7 . . . B 2 6.996 73.43 23.201 1 58.22 ? C27 5A7 401 F 1 HETATM 18 C C28 5A7 . . . B 2 2.482 69.891 30.897 1 63.78 ? C28 5A7 401 F 1 HETATM 19 C C29 5A7 . . . B 2 1.632 69.537 32.096 1 60.79 ? C29 5A7 401 F 1 HETATM 20 P P2 5A7 . . . B 2 7.671 74.553 21.97 1 58.11 ? P2 5A7 401 F 1 HETATM 21 O O4 5A7 . . . B 2 6.657 75.533 21.512 1 57.82 ? O4 5A7 401 F 1 HETATM 22 C C5 5A7 . . . B 2 1.245 74.659 26.432 1 60.94 ? C5 5A7 401 F 1 HETATM 23 C C6 5A7 . . . B 2 0.564 75.755 25.882 1 59.33 ? C6 5A7 401 F 1 HETATM 24 C C7 5A7 . . . B 2 1.124 77.037 25.972 1 58.84 ? C7 5A7 401 F 1 HETATM 25 C C8 5A7 . . . B 2 2.486 74.829 27.079 1 63.07 ? C8 5A7 401 F 1 HETATM 26 C C9 5A7 . . . B 2 3.066 76.127 27.169 1 61.89 ? C9 5A7 401 F 1 HETATM 27 C C10 5A7 . . . B 2 2.364 77.233 26.607 1 59.31 ? C10 5A7 401 F 1 HETATM 28 N N24 5A7 . . . B 2 4.872 73.642 26.035 1 65.67 ? N24 5A7 401 F 1 HETATM 29 N N25 5A7 . . . B 2 2.34 71.133 30.376 1 65.8 ? N25 5A7 401 F 1 HETATM 30 O O30 5A7 . . . B 2 3.246 69.049 30.458 1 66.16 ? O30 5A7 401 F 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #