data_5DGW
#
_model_server_result.job_id            O-QBGCtsAMrjR6d1Hter9Q 
_model_server_result.datetime_utc      '2024-10-10 18:20:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dgw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5DGW 
#
_exptl.entry_id    5DGW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DGW 
_cell.length_a            58.677 
_cell.length_b            86.055 
_cell.length_c            46.003 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DGW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 60 A ASP 60 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc2 D NA NA . A NA 202 1_555 H O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc3 D NA NA . A NA 202 1_555 H O HOH . A HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc4 D NA NA . A NA 202 1_555 H O HOH . A HOH 1028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc5 D NA NA . A NA 202 1_555 H O HOH . A HOH 1039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc6 D NA NA . A NA 202 1_555 H O HOH . A HOH 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5DGW 
_atom_sites.fract_transf_matrix[1][1]    0.017042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01162 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021738 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5B5 A 1 201 201 5B5 G10 . 
D 3 NA A 1 202 501 NA NA . 
E 4 CL A 1 203 511 CL CL . 
F 4 CL B 1 101 512 CL CL . 
G 4 CL B 1 102 513 CL CL . 
H 5 HOH A 1 1001 1001 HOH HOH . 
H 5 HOH A 2 1002 1025 HOH HOH . 
H 5 HOH A 3 1003 1020 HOH HOH . 
H 5 HOH A 4 1004 1084 HOH HOH . 
H 5 HOH A 5 1005 1091 HOH HOH . 
H 5 HOH A 6 1006 1058 HOH HOH . 
H 5 HOH A 7 1007 1090 HOH HOH . 
H 5 HOH A 8 1008 1062 HOH HOH . 
H 5 HOH A 9 1009 1066 HOH HOH . 
H 5 HOH A 10 1010 1131 HOH HOH . 
H 5 HOH A 11 1011 1094 HOH HOH . 
H 5 HOH A 12 1012 1016 HOH HOH . 
H 5 HOH A 13 1013 1036 HOH HOH . 
H 5 HOH A 14 1014 1006 HOH HOH . 
H 5 HOH A 15 1015 1033 HOH HOH . 
H 5 HOH A 16 1016 1052 HOH HOH . 
H 5 HOH A 17 1017 1042 HOH HOH . 
H 5 HOH A 18 1018 1004 HOH HOH . 
H 5 HOH A 19 1019 1003 HOH HOH . 
H 5 HOH A 20 1020 1069 HOH HOH . 
H 5 HOH A 21 1021 1021 HOH HOH . 
H 5 HOH A 22 1022 1114 HOH HOH . 
H 5 HOH A 23 1023 1018 HOH HOH . 
H 5 HOH A 24 1024 1017 HOH HOH . 
H 5 HOH A 25 1025 1028 HOH HOH . 
H 5 HOH A 26 1026 1056 HOH HOH . 
H 5 HOH A 27 1027 1032 HOH HOH . 
H 5 HOH A 28 1028 1106 HOH HOH . 
H 5 HOH A 29 1029 1038 HOH HOH . 
H 5 HOH A 30 1030 1089 HOH HOH . 
H 5 HOH A 31 1031 1093 HOH HOH . 
H 5 HOH A 32 1032 1070 HOH HOH . 
H 5 HOH A 33 1033 1095 HOH HOH . 
H 5 HOH A 34 1034 1129 HOH HOH . 
H 5 HOH A 35 1035 1125 HOH HOH . 
H 5 HOH A 36 1036 1044 HOH HOH . 
H 5 HOH A 37 1037 1121 HOH HOH . 
H 5 HOH A 38 1038 1097 HOH HOH . 
H 5 HOH A 39 1039 1002 HOH HOH . 
H 5 HOH A 40 1040 1049 HOH HOH . 
H 5 HOH A 41 1041 1014 HOH HOH . 
H 5 HOH A 42 1042 1063 HOH HOH . 
H 5 HOH A 43 1043 1085 HOH HOH . 
H 5 HOH A 44 1044 1022 HOH HOH . 
H 5 HOH A 45 1045 1005 HOH HOH . 
H 5 HOH A 46 1046 1057 HOH HOH . 
H 5 HOH A 47 1047 1015 HOH HOH . 
H 5 HOH A 48 1048 1128 HOH HOH . 
H 5 HOH A 49 1049 1030 HOH HOH . 
H 5 HOH A 50 1050 1133 HOH HOH . 
H 5 HOH A 51 1051 1011 HOH HOH . 
H 5 HOH A 52 1052 1103 HOH HOH . 
H 5 HOH A 53 1053 1075 HOH HOH . 
H 5 HOH A 54 1054 1115 HOH HOH . 
H 5 HOH A 55 1055 1112 HOH HOH . 
H 5 HOH A 56 1056 1110 HOH HOH . 
H 5 HOH A 57 1057 1116 HOH HOH . 
H 5 HOH A 58 1058 1105 HOH HOH . 
H 5 HOH A 59 1059 1083 HOH HOH . 
H 5 HOH A 60 1060 1035 HOH HOH . 
H 5 HOH A 61 1061 1099 HOH HOH . 
H 5 HOH A 62 1062 1118 HOH HOH . 
H 5 HOH A 63 1063 1098 HOH HOH . 
H 5 HOH A 64 1064 1126 HOH HOH . 
H 5 HOH A 65 1065 1113 HOH HOH . 
H 5 HOH A 66 1066 1108 HOH HOH . 
H 5 HOH A 67 1067 1135 HOH HOH . 
H 5 HOH A 68 1068 1119 HOH HOH . 
I 5 HOH B 1 1101 1101 HOH HOH . 
I 5 HOH B 2 1102 1080 HOH HOH . 
I 5 HOH B 3 1103 1059 HOH HOH . 
I 5 HOH B 4 1104 1136 HOH HOH . 
I 5 HOH B 5 1105 1117 HOH HOH . 
I 5 HOH B 6 1106 1088 HOH HOH . 
I 5 HOH B 7 1107 1041 HOH HOH . 
I 5 HOH B 8 1108 1068 HOH HOH . 
I 5 HOH B 9 1109 1023 HOH HOH . 
I 5 HOH B 10 1110 1048 HOH HOH . 
I 5 HOH B 11 1111 1130 HOH HOH . 
I 5 HOH B 12 1112 1046 HOH HOH . 
I 5 HOH B 13 1113 1043 HOH HOH . 
I 5 HOH B 14 1114 1120 HOH HOH . 
I 5 HOH B 15 1115 1051 HOH HOH . 
I 5 HOH B 16 1116 1009 HOH HOH . 
I 5 HOH B 17 1117 1050 HOH HOH . 
I 5 HOH B 18 1118 1053 HOH HOH . 
I 5 HOH B 19 1119 1079 HOH HOH . 
I 5 HOH B 20 1120 1123 HOH HOH . 
I 5 HOH B 21 1121 1100 HOH HOH . 
I 5 HOH B 22 1122 1102 HOH HOH . 
I 5 HOH B 23 1123 1107 HOH HOH . 
I 5 HOH B 24 1124 1008 HOH HOH . 
I 5 HOH B 25 1125 1086 HOH HOH . 
I 5 HOH B 26 1126 1027 HOH HOH . 
I 5 HOH B 27 1127 1071 HOH HOH . 
I 5 HOH B 28 1128 1124 HOH HOH . 
I 5 HOH B 29 1129 1127 HOH HOH . 
I 5 HOH B 30 1130 1019 HOH HOH . 
I 5 HOH B 31 1131 1061 HOH HOH . 
I 5 HOH B 32 1132 1029 HOH HOH . 
I 5 HOH B 33 1133 1065 HOH HOH . 
I 5 HOH B 34 1134 1076 HOH HOH . 
I 5 HOH B 35 1135 1139 HOH HOH . 
I 5 HOH B 36 1136 1067 HOH HOH . 
I 5 HOH B 37 1137 1082 HOH HOH . 
I 5 HOH B 38 1138 1137 HOH HOH . 
I 5 HOH B 39 1139 1072 HOH HOH . 
I 5 HOH B 40 1140 1078 HOH HOH . 
I 5 HOH B 41 1141 1047 HOH HOH . 
I 5 HOH B 42 1142 1111 HOH HOH . 
I 5 HOH B 43 1143 1064 HOH HOH . 
I 5 HOH B 44 1144 1007 HOH HOH . 
I 5 HOH B 45 1145 1045 HOH HOH . 
I 5 HOH B 46 1146 1104 HOH HOH . 
I 5 HOH B 47 1147 1081 HOH HOH . 
I 5 HOH B 48 1148 1077 HOH HOH . 
I 5 HOH B 49 1149 1031 HOH HOH . 
I 5 HOH B 50 1150 1054 HOH HOH . 
I 5 HOH B 51 1151 1039 HOH HOH . 
I 5 HOH B 52 1152 1026 HOH HOH . 
I 5 HOH B 53 1153 1109 HOH HOH . 
I 5 HOH B 54 1154 1024 HOH HOH . 
I 5 HOH B 55 1155 1012 HOH HOH . 
I 5 HOH B 56 1156 1034 HOH HOH . 
I 5 HOH B 57 1157 1087 HOH HOH . 
I 5 HOH B 58 1158 1132 HOH HOH . 
I 5 HOH B 59 1159 1010 HOH HOH . 
I 5 HOH B 60 1160 1073 HOH HOH . 
I 5 HOH B 61 1161 1040 HOH HOH . 
I 5 HOH B 62 1162 1060 HOH HOH . 
I 5 HOH B 63 1163 1122 HOH HOH . 
I 5 HOH B 64 1164 1096 HOH HOH . 
I 5 HOH B 65 1165 1055 HOH HOH . 
I 5 HOH B 66 1166 1037 HOH HOH . 
I 5 HOH B 67 1167 1092 HOH HOH . 
I 5 HOH B 68 1168 1138 HOH HOH . 
I 5 HOH B 69 1169 1074 HOH HOH . 
I 5 HOH B 70 1170 1134 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               24.202 
_atom_site.Cartn_y               39.914 
_atom_site.Cartn_z               1.316 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.31 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#