data_5DGZ
#
_model_server_result.job_id            T8y2BehUy-TFud4CwHcHRw 
_model_server_result.datetime_utc      '2024-12-02 11:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5DGZ 
#
_exptl.entry_id    5DGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              397.472 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H-INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5DGZ 
_cell.length_a            98.396 
_cell.length_b            98.396 
_cell.length_c            80.181 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H23 N5 O' 
_chem_comp.formula_weight    397.472 
_chem_comp.id                L20 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H-INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 L20 sing 173 n n 
C1 H1C1 L20 sing 174 n n 
C1 H1C2 L20 sing 175 n n 
C1 H1C3 L20 sing 176 n n 
C2 N3 L20 doub 177 n y 
C2 C11 L20 sing 178 n y 
N3 N4 L20 sing 179 n y 
N4 C6 L20 sing 180 n y 
N4 H4 L20 sing 181 n n 
C6 C7 L20 doub 182 n y 
C6 C11 L20 sing 183 n y 
C7 C8 L20 sing 184 n y 
C7 H7 L20 sing 185 n n 
C8 C9 L20 doub 186 n y 
C8 H8 L20 sing 187 n n 
C9 C10 L20 sing 188 n y 
C9 C12 L20 sing 189 n y 
C10 C11 L20 doub 190 n y 
C10 H10 L20 sing 191 n n 
C12 C13 L20 sing 192 n y 
C12 C36 L20 doub 193 n y 
C13 N14 L20 doub 194 n y 
C13 H13 L20 sing 195 n n 
N14 C15 L20 sing 196 n y 
C15 C16 L20 doub 197 n y 
C15 H15 L20 sing 198 n n 
C16 O17 L20 sing 199 n n 
C16 C36 L20 sing 200 n y 
O17 C18 L20 sing 201 n n 
C18 C19 L20 sing 202 n n 
C18 H181 L20 sing 203 n n 
C18 H182 L20 sing 204 n n 
C19 N21 L20 sing 205 n n 
C19 C25 L20 sing 206 n n 
C19 H19 L20 sing 207 n n 
N21 H211 L20 sing 208 n n 
N21 H212 L20 sing 209 n n 
C25 C26 L20 sing 210 n n 
C25 H251 L20 sing 211 n n 
C25 H252 L20 sing 212 n n 
C26 C27 L20 doub 213 n y 
C26 C35 L20 sing 214 n y 
C27 N28 L20 sing 215 n y 
C27 H27 L20 sing 216 n n 
N28 C30 L20 sing 217 n y 
N28 H28 L20 sing 218 n n 
C30 C31 L20 doub 219 n y 
C30 C35 L20 sing 220 n y 
C31 C32 L20 sing 221 n y 
C31 H31 L20 sing 222 n n 
C32 C33 L20 doub 223 n y 
C32 H32 L20 sing 224 n n 
C33 C34 L20 sing 225 n y 
C33 H33 L20 sing 226 n n 
C34 C35 L20 doub 227 n y 
C34 H34 L20 sing 228 n n 
C36 H36 L20 sing 229 n n 
#
_atom_sites.entry_id                     5DGZ 
_atom_sites.fract_transf_matrix[1][1]    0.010163 
_atom_sites.fract_transf_matrix[1][2]    0.005868 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011735 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012472 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 L20 A 1 401 1 L20 ZZZ . 
C 3 PO4 A 1 402 1 PO4 PO4 . 
D 3 PO4 A 1 403 2 PO4 PO4 . 
E 4 HOH A 1 501 61 HOH HOH . 
E 4 HOH A 2 502 59 HOH HOH . 
E 4 HOH A 3 503 25 HOH HOH . 
E 4 HOH A 4 504 3 HOH HOH . 
E 4 HOH A 5 505 45 HOH HOH . 
E 4 HOH A 6 506 64 HOH HOH . 
E 4 HOH A 7 507 95 HOH HOH . 
E 4 HOH A 8 508 29 HOH HOH . 
E 4 HOH A 9 509 38 HOH HOH . 
E 4 HOH A 10 510 10 HOH HOH . 
E 4 HOH A 11 511 35 HOH HOH . 
E 4 HOH A 12 512 12 HOH HOH . 
E 4 HOH A 13 513 91 HOH HOH . 
E 4 HOH A 14 514 27 HOH HOH . 
E 4 HOH A 15 515 66 HOH HOH . 
E 4 HOH A 16 516 5 HOH HOH . 
E 4 HOH A 17 517 107 HOH HOH . 
E 4 HOH A 18 518 1 HOH HOH . 
E 4 HOH A 19 519 9 HOH HOH . 
E 4 HOH A 20 520 15 HOH HOH . 
E 4 HOH A 21 521 16 HOH HOH . 
E 4 HOH A 22 522 11 HOH HOH . 
E 4 HOH A 23 523 48 HOH HOH . 
E 4 HOH A 24 524 78 HOH HOH . 
E 4 HOH A 25 525 31 HOH HOH . 
E 4 HOH A 26 526 40 HOH HOH . 
E 4 HOH A 27 527 74 HOH HOH . 
E 4 HOH A 28 528 94 HOH HOH . 
E 4 HOH A 29 529 26 HOH HOH . 
E 4 HOH A 30 530 2 HOH HOH . 
E 4 HOH A 31 531 7 HOH HOH . 
E 4 HOH A 32 532 13 HOH HOH . 
E 4 HOH A 33 533 54 HOH HOH . 
E 4 HOH A 34 534 87 HOH HOH . 
E 4 HOH A 35 535 96 HOH HOH . 
E 4 HOH A 36 536 52 HOH HOH . 
E 4 HOH A 37 537 21 HOH HOH . 
E 4 HOH A 38 538 37 HOH HOH . 
E 4 HOH A 39 539 108 HOH HOH . 
E 4 HOH A 40 540 85 HOH HOH . 
E 4 HOH A 41 541 50 HOH HOH . 
E 4 HOH A 42 542 80 HOH HOH . 
E 4 HOH A 43 543 67 HOH HOH . 
E 4 HOH A 44 544 56 HOH HOH . 
E 4 HOH A 45 545 41 HOH HOH . 
E 4 HOH A 46 546 4 HOH HOH . 
E 4 HOH A 47 547 23 HOH HOH . 
E 4 HOH A 48 548 6 HOH HOH . 
E 4 HOH A 49 549 55 HOH HOH . 
E 4 HOH A 50 550 33 HOH HOH . 
E 4 HOH A 51 551 17 HOH HOH . 
E 4 HOH A 52 552 109 HOH HOH . 
E 4 HOH A 53 553 42 HOH HOH . 
E 4 HOH A 54 554 69 HOH HOH . 
E 4 HOH A 55 555 44 HOH HOH . 
E 4 HOH A 56 556 79 HOH HOH . 
E 4 HOH A 57 557 19 HOH HOH . 
E 4 HOH A 58 558 101 HOH HOH . 
E 4 HOH A 59 559 47 HOH HOH . 
E 4 HOH A 60 560 46 HOH HOH . 
E 4 HOH A 61 561 82 HOH HOH . 
E 4 HOH A 62 562 28 HOH HOH . 
E 4 HOH A 63 563 84 HOH HOH . 
E 4 HOH A 64 564 99 HOH HOH . 
E 4 HOH A 65 565 97 HOH HOH . 
E 4 HOH A 66 566 8 HOH HOH . 
E 4 HOH A 67 567 104 HOH HOH . 
E 4 HOH A 68 568 92 HOH HOH . 
E 4 HOH A 69 569 51 HOH HOH . 
E 4 HOH A 70 570 73 HOH HOH . 
E 4 HOH A 71 571 88 HOH HOH . 
E 4 HOH A 72 572 57 HOH HOH . 
E 4 HOH A 73 573 39 HOH HOH . 
E 4 HOH A 74 574 86 HOH HOH . 
E 4 HOH A 75 575 71 HOH HOH . 
E 4 HOH A 76 576 36 HOH HOH . 
E 4 HOH A 77 577 34 HOH HOH . 
E 4 HOH A 78 578 70 HOH HOH . 
E 4 HOH A 79 579 32 HOH HOH . 
E 4 HOH A 80 580 72 HOH HOH . 
E 4 HOH A 81 581 76 HOH HOH . 
E 4 HOH A 82 582 106 HOH HOH . 
E 4 HOH A 83 583 90 HOH HOH . 
E 4 HOH A 84 584 102 HOH HOH . 
E 4 HOH A 85 585 65 HOH HOH . 
E 4 HOH A 86 586 77 HOH HOH . 
E 4 HOH A 87 587 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 L20 . . . B 2 44.598 -1.11 -1.034 1 35.76 ? C1 L20 401 A 1 
HETATM 2 C C2 L20 . . . B 2 44.271 -1.451 0.377 1 34.81 ? C2 L20 401 A 1 
HETATM 3 N N3 L20 . . . B 2 45.101 -1.41 1.331 1 36.54 ? N3 L20 401 A 1 
HETATM 4 N N4 L20 . . . B 2 44.487 -1.788 2.483 1 37.37 ? N4 L20 401 A 1 
HETATM 5 C C6 L20 . . . B 2 43.204 -2.089 2.241 1 33.67 ? C6 L20 401 A 1 
HETATM 6 C C7 L20 . . . B 2 42.187 -2.511 3.04 1 28.87 ? C7 L20 401 A 1 
HETATM 7 C C8 L20 . . . B 2 40.987 -2.737 2.506 1 29.38 ? C8 L20 401 A 1 
HETATM 8 C C9 L20 . . . B 2 40.752 -2.546 1.157 1 32.51 ? C9 L20 401 A 1 
HETATM 9 C C10 L20 . . . B 2 41.766 -2.129 0.348 1 32.47 ? C10 L20 401 A 1 
HETATM 10 C C11 L20 . . . B 2 43.007 -1.895 0.892 1 32.57 ? C11 L20 401 A 1 
HETATM 11 C C12 L20 . . . B 2 39.412 -2.831 0.634 1 31.57 ? C12 L20 401 A 1 
HETATM 12 C C13 L20 . . . B 2 38.327 -2.587 1.425 1 31.89 ? C13 L20 401 A 1 
HETATM 13 N N14 L20 . . . B 2 37.145 -2.836 1.009 1 33.79 ? N14 L20 401 A 1 
HETATM 14 C C15 L20 . . . B 2 36.943 -3.341 -0.162 1 33.88 ? C15 L20 401 A 1 
HETATM 15 C C16 L20 . . . B 2 37.951 -3.636 -1.029 1 34.86 ? C16 L20 401 A 1 
HETATM 16 O O17 L20 . . . B 2 37.648 -4.149 -2.218 1 35.49 ? O17 L20 401 A 1 
HETATM 17 C C18 L20 . . . B 2 38.551 -4.995 -2.876 1 33.38 ? C18 L20 401 A 1 
HETATM 18 C C19 L20 . . . B 2 37.905 -5.547 -4.129 1 35.42 ? C19 L20 401 A 1 
HETATM 19 N N21 L20 . . . B 2 36.735 -6.286 -3.714 1 33.07 ? N21 L20 401 A 1 
HETATM 20 C C25 L20 . . . B 2 37.5 -4.423 -5.086 1 38.05 ? C25 L20 401 A 1 
HETATM 21 C C26 L20 . . . B 2 38.693 -3.689 -5.62 1 42.45 ? C26 L20 401 A 1 
HETATM 22 C C27 L20 . . . B 2 39.365 -3.944 -6.725 1 41.53 ? C27 L20 401 A 1 
HETATM 23 N N28 L20 . . . B 2 40.387 -3.087 -6.858 1 41.58 ? N28 L20 401 A 1 
HETATM 24 C C30 L20 . . . B 2 40.406 -2.231 -5.822 1 44.41 ? C30 L20 401 A 1 
HETATM 25 C C31 L20 . . . B 2 41.227 -1.185 -5.496 1 43.78 ? C31 L20 401 A 1 
HETATM 26 C C32 L20 . . . B 2 40.981 -0.5 -4.355 1 44.68 ? C32 L20 401 A 1 
HETATM 27 C C33 L20 . . . B 2 39.924 -0.83 -3.551 1 45.77 ? C33 L20 401 A 1 
HETATM 28 C C34 L20 . . . B 2 39.112 -1.858 -3.857 1 43.99 ? C34 L20 401 A 1 
HETATM 29 C C35 L20 . . . B 2 39.344 -2.568 -5.002 1 44.05 ? C35 L20 401 A 1 
HETATM 30 C C36 L20 . . . B 2 39.228 -3.38 -0.621 1 33.08 ? C36 L20 401 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           30 
#