data_5DGZ # _model_server_result.job_id 6QmrSb0-t6I4NMz6LzelEQ _model_server_result.datetime_utc '2024-10-17 13:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5DGZ # _exptl.entry_id 5DGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DGZ _cell.length_a 98.396 _cell.length_b 98.396 _cell.length_c 80.181 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 317 n n P O2 PO4 sing 318 n n P O3 PO4 sing 319 n n P O4 PO4 sing 320 n n # _atom_sites.entry_id 5DGZ _atom_sites.fract_transf_matrix[1][1] 0.010163 _atom_sites.fract_transf_matrix[1][2] 0.005868 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L20 A 1 401 1 L20 ZZZ . C 3 PO4 A 1 402 1 PO4 PO4 . D 3 PO4 A 1 403 2 PO4 PO4 . E 4 HOH A 1 501 61 HOH HOH . E 4 HOH A 2 502 59 HOH HOH . E 4 HOH A 3 503 25 HOH HOH . E 4 HOH A 4 504 3 HOH HOH . E 4 HOH A 5 505 45 HOH HOH . E 4 HOH A 6 506 64 HOH HOH . E 4 HOH A 7 507 95 HOH HOH . E 4 HOH A 8 508 29 HOH HOH . E 4 HOH A 9 509 38 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 35 HOH HOH . E 4 HOH A 12 512 12 HOH HOH . E 4 HOH A 13 513 91 HOH HOH . E 4 HOH A 14 514 27 HOH HOH . E 4 HOH A 15 515 66 HOH HOH . E 4 HOH A 16 516 5 HOH HOH . E 4 HOH A 17 517 107 HOH HOH . E 4 HOH A 18 518 1 HOH HOH . E 4 HOH A 19 519 9 HOH HOH . E 4 HOH A 20 520 15 HOH HOH . E 4 HOH A 21 521 16 HOH HOH . E 4 HOH A 22 522 11 HOH HOH . E 4 HOH A 23 523 48 HOH HOH . E 4 HOH A 24 524 78 HOH HOH . E 4 HOH A 25 525 31 HOH HOH . E 4 HOH A 26 526 40 HOH HOH . E 4 HOH A 27 527 74 HOH HOH . E 4 HOH A 28 528 94 HOH HOH . E 4 HOH A 29 529 26 HOH HOH . E 4 HOH A 30 530 2 HOH HOH . E 4 HOH A 31 531 7 HOH HOH . E 4 HOH A 32 532 13 HOH HOH . E 4 HOH A 33 533 54 HOH HOH . E 4 HOH A 34 534 87 HOH HOH . E 4 HOH A 35 535 96 HOH HOH . E 4 HOH A 36 536 52 HOH HOH . E 4 HOH A 37 537 21 HOH HOH . E 4 HOH A 38 538 37 HOH HOH . E 4 HOH A 39 539 108 HOH HOH . E 4 HOH A 40 540 85 HOH HOH . E 4 HOH A 41 541 50 HOH HOH . E 4 HOH A 42 542 80 HOH HOH . E 4 HOH A 43 543 67 HOH HOH . E 4 HOH A 44 544 56 HOH HOH . E 4 HOH A 45 545 41 HOH HOH . E 4 HOH A 46 546 4 HOH HOH . E 4 HOH A 47 547 23 HOH HOH . E 4 HOH A 48 548 6 HOH HOH . E 4 HOH A 49 549 55 HOH HOH . E 4 HOH A 50 550 33 HOH HOH . E 4 HOH A 51 551 17 HOH HOH . E 4 HOH A 52 552 109 HOH HOH . E 4 HOH A 53 553 42 HOH HOH . E 4 HOH A 54 554 69 HOH HOH . E 4 HOH A 55 555 44 HOH HOH . E 4 HOH A 56 556 79 HOH HOH . E 4 HOH A 57 557 19 HOH HOH . E 4 HOH A 58 558 101 HOH HOH . E 4 HOH A 59 559 47 HOH HOH . E 4 HOH A 60 560 46 HOH HOH . E 4 HOH A 61 561 82 HOH HOH . E 4 HOH A 62 562 28 HOH HOH . E 4 HOH A 63 563 84 HOH HOH . E 4 HOH A 64 564 99 HOH HOH . E 4 HOH A 65 565 97 HOH HOH . E 4 HOH A 66 566 8 HOH HOH . E 4 HOH A 67 567 104 HOH HOH . E 4 HOH A 68 568 92 HOH HOH . E 4 HOH A 69 569 51 HOH HOH . E 4 HOH A 70 570 73 HOH HOH . E 4 HOH A 71 571 88 HOH HOH . E 4 HOH A 72 572 57 HOH HOH . E 4 HOH A 73 573 39 HOH HOH . E 4 HOH A 74 574 86 HOH HOH . E 4 HOH A 75 575 71 HOH HOH . E 4 HOH A 76 576 36 HOH HOH . E 4 HOH A 77 577 34 HOH HOH . E 4 HOH A 78 578 70 HOH HOH . E 4 HOH A 79 579 32 HOH HOH . E 4 HOH A 80 580 72 HOH HOH . E 4 HOH A 81 581 76 HOH HOH . E 4 HOH A 82 582 106 HOH HOH . E 4 HOH A 83 583 90 HOH HOH . E 4 HOH A 84 584 102 HOH HOH . E 4 HOH A 85 585 65 HOH HOH . E 4 HOH A 86 586 77 HOH HOH . E 4 HOH A 87 587 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 50.969 -37.258 -14.411 1 139.36 ? P PO4 402 A 1 HETATM 2 O O1 PO4 . . . C 3 51.285 -36.447 -15.643 1 144.55 ? O1 PO4 402 A 1 HETATM 3 O O2 PO4 . . . C 3 50.507 -36.347 -13.302 1 144.17 ? O2 PO4 402 A 1 HETATM 4 O O3 PO4 . . . C 3 52.213 -37.987 -13.971 1 144.04 ? O3 PO4 402 A 1 HETATM 5 O O4 PO4 . . . C 3 49.885 -38.255 -14.739 1 140.07 ? O4 PO4 402 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #