data_5DH3
#
_model_server_result.job_id            ew-e2DhuEWbNpxChBAHj-g 
_model_server_result.datetime_utc      '2024-10-28 02:31:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dh3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    5DH3 
#
_exptl.entry_id    5DH3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              416.477 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(5,10-dimethyl-6-oxo-6,10-dihydro-5H-pyrimido[5,4-b]thieno[3,2-e][1,4]diazepin-2-yl)amino]benzenesulfonamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5DH3 
_cell.length_a            89.871 
_cell.length_b            98.462 
_cell.length_c            166.771 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DH3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 175 A ASP 173 1_555 A N TPO 176 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C TPO 176 A TPO 174 1_555 A N MET 177 A MET 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C ASN 181 A ASN 179 1_555 A N TPO 182 A TPO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C TPO 182 A TPO 180 1_555 A N VAL 183 A VAL 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 B C ASP 175 B ASP 173 1_555 B N TPO 176 B TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale6 B C TPO 176 B TPO 174 1_555 B N MET 177 B MET 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 B C ASN 181 B ASN 179 1_555 B N TPO 182 B TPO 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 B C TPO 182 B TPO 180 1_555 B N VAL 183 B VAL 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C17 H16 N6 O3 S2' 
_chem_comp.formula_weight    416.477 
_chem_comp.id                5BS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(5,10-dimethyl-6-oxo-6,10-dihydro-5H-pyrimido[5,4-b]thieno[3,2-e][1,4]diazepin-2-yl)amino]benzenesulfonamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C5 5BS doub 1 n y 
C4 N3 5BS sing 2 n y 
C4 NBA 5BS sing 3 n n 
C5 C6 5BS sing 4 n y 
C5 NAZ 5BS sing 5 n n 
C6 N1 5BS doub 6 n y 
N1 C2 5BS sing 7 n y 
N3 C2 5BS doub 8 n y 
CAA NAZ 5BS sing 9 n n 
NAZ CAU 5BS sing 10 n n 
CAU OAD 5BS doub 11 n n 
CAU CAY 5BS sing 12 n n 
CAY SAQ 5BS sing 13 n y 
CAY CAW 5BS doub 14 n y 
SAQ CAG 5BS sing 15 n y 
CAG CAL 5BS doub 16 n y 
CAL CAW 5BS sing 17 n y 
CAW NBA 5BS sing 18 n n 
NBA CAB 5BS sing 19 n n 
C2 NAP 5BS sing 20 n n 
NAP CAR 5BS sing 21 n n 
CAR CAH 5BS doub 22 n y 
CAR CAI 5BS sing 23 n y 
CAH CAJ 5BS sing 24 n y 
CAJ CAT 5BS doub 25 n y 
CAT SBB 5BS sing 26 n n 
CAT CAK 5BS sing 27 n y 
SBB OAE 5BS doub 28 n n 
SBB OAF 5BS doub 29 n n 
SBB NAC 5BS sing 30 n n 
CAK CAI 5BS doub 31 n y 
C6 H1 5BS sing 32 n n 
CAA H2 5BS sing 33 n n 
CAA H3 5BS sing 34 n n 
CAA H4 5BS sing 35 n n 
CAG H7 5BS sing 36 n n 
CAL H8 5BS sing 37 n n 
CAB H9 5BS sing 38 n n 
CAB H10 5BS sing 39 n n 
CAB H11 5BS sing 40 n n 
NAP H12 5BS sing 41 n n 
CAH H13 5BS sing 42 n n 
CAJ H14 5BS sing 43 n n 
NAC H15 5BS sing 44 n n 
NAC H16 5BS sing 45 n n 
CAK H17 5BS sing 46 n n 
CAI H18 5BS sing 47 n n 
#
_atom_sites.entry_id                     5DH3 
_atom_sites.fract_transf_matrix[1][1]    0.011127 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010156 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005996 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5BS A 1 401 1 5BS DRG . 
D 3 CL A 1 402 1 CL CL . 
E 2 5BS B 1 401 1 5BS DRG . 
F 4 SO4 B 1 402 1 SO4 SO4 . 
G 5 HOH A 1 501 88 HOH HOH . 
G 5 HOH A 2 502 96 HOH HOH . 
G 5 HOH A 3 503 90 HOH HOH . 
G 5 HOH A 4 504 53 HOH HOH . 
G 5 HOH A 5 505 89 HOH HOH . 
G 5 HOH A 6 506 118 HOH HOH . 
G 5 HOH A 7 507 129 HOH HOH . 
G 5 HOH A 8 508 93 HOH HOH . 
G 5 HOH A 9 509 81 HOH HOH . 
G 5 HOH A 10 510 14 HOH HOH . 
G 5 HOH A 11 511 4 HOH HOH . 
G 5 HOH A 12 512 8 HOH HOH . 
G 5 HOH A 13 513 19 HOH HOH . 
G 5 HOH A 14 514 3 HOH HOH . 
G 5 HOH A 15 515 1 HOH HOH . 
G 5 HOH A 16 516 2 HOH HOH . 
G 5 HOH A 17 517 12 HOH HOH . 
G 5 HOH A 18 518 75 HOH HOH . 
G 5 HOH A 19 519 78 HOH HOH . 
G 5 HOH A 20 520 45 HOH HOH . 
G 5 HOH A 21 521 82 HOH HOH . 
G 5 HOH A 22 522 13 HOH HOH . 
G 5 HOH A 23 523 95 HOH HOH . 
G 5 HOH A 24 524 44 HOH HOH . 
G 5 HOH A 25 525 41 HOH HOH . 
G 5 HOH A 26 526 97 HOH HOH . 
G 5 HOH A 27 527 5 HOH HOH . 
G 5 HOH A 28 528 43 HOH HOH . 
G 5 HOH A 29 529 132 HOH HOH . 
G 5 HOH A 30 530 79 HOH HOH . 
G 5 HOH A 31 531 128 HOH HOH . 
G 5 HOH A 32 532 98 HOH HOH . 
G 5 HOH A 33 533 120 HOH HOH . 
G 5 HOH A 34 534 50 HOH HOH . 
G 5 HOH A 35 535 116 HOH HOH . 
G 5 HOH A 36 536 21 HOH HOH . 
G 5 HOH A 37 537 87 HOH HOH . 
G 5 HOH A 38 538 47 HOH HOH . 
G 5 HOH A 39 539 16 HOH HOH . 
G 5 HOH A 40 540 57 HOH HOH . 
G 5 HOH A 41 541 39 HOH HOH . 
G 5 HOH A 42 542 91 HOH HOH . 
G 5 HOH A 43 543 7 HOH HOH . 
G 5 HOH A 44 544 76 HOH HOH . 
G 5 HOH A 45 545 127 HOH HOH . 
G 5 HOH A 46 546 52 HOH HOH . 
G 5 HOH A 47 547 86 HOH HOH . 
G 5 HOH A 48 548 42 HOH HOH . 
G 5 HOH A 49 549 117 HOH HOH . 
G 5 HOH A 50 550 38 HOH HOH . 
G 5 HOH A 51 551 40 HOH HOH . 
G 5 HOH A 52 552 55 HOH HOH . 
G 5 HOH A 53 553 9 HOH HOH . 
G 5 HOH A 54 554 130 HOH HOH . 
G 5 HOH A 55 555 83 HOH HOH . 
G 5 HOH A 56 556 94 HOH HOH . 
G 5 HOH A 57 557 119 HOH HOH . 
G 5 HOH A 58 558 121 HOH HOH . 
G 5 HOH A 59 559 80 HOH HOH . 
G 5 HOH A 60 560 18 HOH HOH . 
G 5 HOH A 61 561 56 HOH HOH . 
G 5 HOH A 62 562 46 HOH HOH . 
G 5 HOH A 63 563 36 HOH HOH . 
G 5 HOH A 64 564 51 HOH HOH . 
G 5 HOH A 65 565 20 HOH HOH . 
G 5 HOH A 66 566 54 HOH HOH . 
G 5 HOH A 67 567 85 HOH HOH . 
G 5 HOH A 68 568 58 HOH HOH . 
G 5 HOH A 69 569 15 HOH HOH . 
G 5 HOH A 70 570 115 HOH HOH . 
G 5 HOH A 71 571 131 HOH HOH . 
H 5 HOH B 1 501 107 HOH HOH . 
H 5 HOH B 2 502 74 HOH HOH . 
H 5 HOH B 3 503 111 HOH HOH . 
H 5 HOH B 4 504 34 HOH HOH . 
H 5 HOH B 5 505 71 HOH HOH . 
H 5 HOH B 6 506 102 HOH HOH . 
H 5 HOH B 7 507 110 HOH HOH . 
H 5 HOH B 8 508 77 HOH HOH . 
H 5 HOH B 9 509 24 HOH HOH . 
H 5 HOH B 10 510 30 HOH HOH . 
H 5 HOH B 11 511 65 HOH HOH . 
H 5 HOH B 12 512 100 HOH HOH . 
H 5 HOH B 13 513 23 HOH HOH . 
H 5 HOH B 14 514 64 HOH HOH . 
H 5 HOH B 15 515 104 HOH HOH . 
H 5 HOH B 16 516 62 HOH HOH . 
H 5 HOH B 17 517 114 HOH HOH . 
H 5 HOH B 18 518 27 HOH HOH . 
H 5 HOH B 19 519 125 HOH HOH . 
H 5 HOH B 20 520 59 HOH HOH . 
H 5 HOH B 21 521 109 HOH HOH . 
H 5 HOH B 22 522 6 HOH HOH . 
H 5 HOH B 23 523 113 HOH HOH . 
H 5 HOH B 24 524 22 HOH HOH . 
H 5 HOH B 25 525 73 HOH HOH . 
H 5 HOH B 26 526 32 HOH HOH . 
H 5 HOH B 27 527 67 HOH HOH . 
H 5 HOH B 28 528 31 HOH HOH . 
H 5 HOH B 29 529 124 HOH HOH . 
H 5 HOH B 30 530 37 HOH HOH . 
H 5 HOH B 31 531 134 HOH HOH . 
H 5 HOH B 32 532 35 HOH HOH . 
H 5 HOH B 33 533 69 HOH HOH . 
H 5 HOH B 34 534 72 HOH HOH . 
H 5 HOH B 35 535 133 HOH HOH . 
H 5 HOH B 36 536 126 HOH HOH . 
H 5 HOH B 37 537 66 HOH HOH . 
H 5 HOH B 38 538 33 HOH HOH . 
H 5 HOH B 39 539 122 HOH HOH . 
H 5 HOH B 40 540 106 HOH HOH . 
H 5 HOH B 41 541 25 HOH HOH . 
H 5 HOH B 42 542 123 HOH HOH . 
H 5 HOH B 43 543 68 HOH HOH . 
H 5 HOH B 44 544 112 HOH HOH . 
H 5 HOH B 45 545 135 HOH HOH . 
H 5 HOH B 46 546 29 HOH HOH . 
H 5 HOH B 47 547 103 HOH HOH . 
H 5 HOH B 48 548 70 HOH HOH . 
H 5 HOH B 49 549 61 HOH HOH . 
H 5 HOH B 50 550 26 HOH HOH . 
H 5 HOH B 51 551 105 HOH HOH . 
H 5 HOH B 52 552 48 HOH HOH . 
H 5 HOH B 53 553 63 HOH HOH . 
H 5 HOH B 54 554 99 HOH HOH . 
H 5 HOH B 55 555 28 HOH HOH . 
H 5 HOH B 56 556 108 HOH HOH . 
H 5 HOH B 57 557 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 5BS . . . E 2 21.752 14.468 4.185 1 49.7 ? C4 5BS 401 B 1 
HETATM 2 C C5 5BS . . . E 2 22.197 15.513 4.962 1 51.02 ? C5 5BS 401 B 1 
HETATM 3 C C6 5BS . . . E 2 21.431 16.64 5.088 1 47.76 ? C6 5BS 401 B 1 
HETATM 4 N N1 5BS . . . E 2 20.233 16.665 4.409 1 49.53 ? N1 5BS 401 B 1 
HETATM 5 N N3 5BS . . . E 2 20.579 14.544 3.543 1 50.73 ? N3 5BS 401 B 1 
HETATM 6 C CAA 5BS . . . E 2 23.329 16.566 6.791 1 52.55 ? CAA 5BS 401 B 1 
HETATM 7 N NAZ 5BS . . . E 2 23.325 15.618 5.658 1 56.5 ? NAZ 5BS 401 B 1 
HETATM 8 C CAU 5BS . . . E 2 24.456 14.961 5.396 1 59.04 ? CAU 5BS 401 B 1 
HETATM 9 O OAD 5BS . . . E 2 25.385 15.196 6.151 1 59.9 ? OAD 5BS 401 B 1 
HETATM 10 C CAY 5BS . . . E 2 24.64 14.074 4.429 1 55.64 ? CAY 5BS 401 B 1 
HETATM 11 S SAQ 5BS . . . E 2 26.087 13.725 3.851 1 59.58 ? SAQ 5BS 401 B 1 
HETATM 12 C CAG 5BS . . . E 2 25.623 12.634 2.777 1 49.4 ? CAG 5BS 401 B 1 
HETATM 13 C CAL 5BS . . . E 2 24.299 12.536 2.87 1 53.07 ? CAL 5BS 401 B 1 
HETATM 14 C CAW 5BS . . . E 2 23.744 13.327 3.794 1 59.03 ? CAW 5BS 401 B 1 
HETATM 15 N NBA 5BS . . . E 2 22.418 13.339 3.975 1 53.51 ? NBA 5BS 401 B 1 
HETATM 16 C CAB 5BS . . . E 2 21.657 12.075 3.927 1 48.04 ? CAB 5BS 401 B 1 
HETATM 17 C C2 5BS . . . E 2 19.829 15.644 3.66 1 43.81 ? C2 5BS 401 B 1 
HETATM 18 N NAP 5BS . . . E 2 18.659 15.815 3.07 1 51.04 ? NAP 5BS 401 B 1 
HETATM 19 C CAR 5BS . . . E 2 18.16 14.98 2.169 1 56.67 ? CAR 5BS 401 B 1 
HETATM 20 C CAH 5BS . . . E 2 16.919 15.299 1.647 1 57.49 ? CAH 5BS 401 B 1 
HETATM 21 C CAJ 5BS . . . E 2 16.302 14.498 0.707 1 52.96 ? CAJ 5BS 401 B 1 
HETATM 22 C CAT 5BS . . . E 2 16.936 13.352 0.278 1 58.05 ? CAT 5BS 401 B 1 
HETATM 23 S SBB 5BS . . . E 2 16.159 12.363 -0.894 1 75.79 ? SBB 5BS 401 B 1 
HETATM 24 O OAE 5BS . . . E 2 16.021 10.936 -0.358 1 70.5 ? OAE 5BS 401 B 1 
HETATM 25 O OAF 5BS . . . E 2 14.767 12.936 -1.174 1 73.77 ? OAF 5BS 401 B 1 
HETATM 26 N NAC 5BS . . . E 2 17.032 12.348 -2.27 1 53.86 ? NAC 5BS 401 B 1 
HETATM 27 C CAK 5BS . . . E 2 18.183 13.027 0.795 1 58.24 ? CAK 5BS 401 B 1 
HETATM 28 C CAI 5BS . . . E 2 18.804 13.835 1.741 1 51.75 ? CAI 5BS 401 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#