data_5DH5 # _model_server_result.job_id DKCieUmjbdWndOJ97FFf7Q _model_server_result.datetime_utc '2024-10-11 02:18:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 5DH5 # _exptl.entry_id 5DH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DH5 _cell.length_a 50.51 _cell.length_b 81.78 _cell.length_c 158.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 A HIS 519 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A NE2 HIS 119 A HIS 553 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 A OD2 ASP 120 A ASP 554 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 A OD1 ASP 120 A ASP 554 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 A OD1 ASP 230 A ASP 664 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc7 D MG MG . A MG 802 1_555 I O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc8 D MG MG . A MG 802 1_555 I O HOH . A HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc9 D MG MG . A MG 802 1_555 I O HOH . A HOH 937 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc10 D MG MG . A MG 802 1_555 I O HOH . A HOH 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc11 D MG MG . A MG 802 1_555 I O HOH . A HOH 966 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc12 B NE2 HIS 85 B HIS 519 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 B NE2 HIS 119 B HIS 553 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc14 B OD2 ASP 120 B ASP 554 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc15 B OD1 ASP 120 B ASP 554 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc16 B OD1 ASP 230 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc17 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc18 G MG MG . B MG 802 1_555 J O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc21 G MG MG . B MG 802 1_555 J O HOH . B HOH 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc22 G MG MG . B MG 802 1_555 J O HOH . B HOH 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5DH5 _atom_sites.fract_transf_matrix[1][1] 0.019798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 1 ZN ZN . D 3 MG A 1 802 2 MG MG . E 4 5AY A 1 803 2 5AY MRK . F 2 ZN B 1 801 3 ZN ZN . G 3 MG B 1 802 4 MG MG . H 4 5AY B 1 803 1 5AY MRK . I 5 HOH A 1 901 129 HOH HOH . I 5 HOH A 2 902 65 HOH HOH . I 5 HOH A 3 903 152 HOH HOH . I 5 HOH A 4 904 126 HOH HOH . I 5 HOH A 5 905 78 HOH HOH . I 5 HOH A 6 906 68 HOH HOH . I 5 HOH A 7 907 141 HOH HOH . I 5 HOH A 8 908 13 HOH HOH . I 5 HOH A 9 909 94 HOH HOH . I 5 HOH A 10 910 105 HOH HOH . I 5 HOH A 11 911 97 HOH HOH . I 5 HOH A 12 912 5 HOH HOH . I 5 HOH A 13 913 145 HOH HOH . I 5 HOH A 14 914 61 HOH HOH . I 5 HOH A 15 915 7 HOH HOH . I 5 HOH A 16 916 80 HOH HOH . I 5 HOH A 17 917 16 HOH HOH . I 5 HOH A 18 918 128 HOH HOH . I 5 HOH A 19 919 166 HOH HOH . I 5 HOH A 20 920 149 HOH HOH . I 5 HOH A 21 921 21 HOH HOH . I 5 HOH A 22 922 92 HOH HOH . I 5 HOH A 23 923 12 HOH HOH . I 5 HOH A 24 924 118 HOH HOH . I 5 HOH A 25 925 36 HOH HOH . I 5 HOH A 26 926 26 HOH HOH . I 5 HOH A 27 927 79 HOH HOH . I 5 HOH A 28 928 10 HOH HOH . I 5 HOH A 29 929 117 HOH HOH . I 5 HOH A 30 930 33 HOH HOH . I 5 HOH A 31 931 42 HOH HOH . I 5 HOH A 32 932 109 HOH HOH . I 5 HOH A 33 933 125 HOH HOH . I 5 HOH A 34 934 70 HOH HOH . I 5 HOH A 35 935 6 HOH HOH . I 5 HOH A 36 936 100 HOH HOH . I 5 HOH A 37 937 93 HOH HOH . I 5 HOH A 38 938 107 HOH HOH . I 5 HOH A 39 939 85 HOH HOH . I 5 HOH A 40 940 135 HOH HOH . I 5 HOH A 41 941 25 HOH HOH . I 5 HOH A 42 942 8 HOH HOH . I 5 HOH A 43 943 32 HOH HOH . I 5 HOH A 44 944 47 HOH HOH . I 5 HOH A 45 945 57 HOH HOH . I 5 HOH A 46 946 162 HOH HOH . I 5 HOH A 47 947 84 HOH HOH . I 5 HOH A 48 948 71 HOH HOH . I 5 HOH A 49 949 29 HOH HOH . I 5 HOH A 50 950 60 HOH HOH . I 5 HOH A 51 951 53 HOH HOH . I 5 HOH A 52 952 50 HOH HOH . I 5 HOH A 53 953 1 HOH HOH . I 5 HOH A 54 954 18 HOH HOH . I 5 HOH A 55 955 96 HOH HOH . I 5 HOH A 56 956 153 HOH HOH . I 5 HOH A 57 957 48 HOH HOH . I 5 HOH A 58 958 56 HOH HOH . I 5 HOH A 59 959 9 HOH HOH . I 5 HOH A 60 960 115 HOH HOH . I 5 HOH A 61 961 156 HOH HOH . I 5 HOH A 62 962 49 HOH HOH . I 5 HOH A 63 963 40 HOH HOH . I 5 HOH A 64 964 51 HOH HOH . I 5 HOH A 65 965 58 HOH HOH . I 5 HOH A 66 966 95 HOH HOH . I 5 HOH A 67 967 46 HOH HOH . I 5 HOH A 68 968 54 HOH HOH . I 5 HOH A 69 969 41 HOH HOH . I 5 HOH A 70 970 82 HOH HOH . I 5 HOH A 71 971 83 HOH HOH . I 5 HOH A 72 972 44 HOH HOH . I 5 HOH A 73 973 73 HOH HOH . I 5 HOH A 74 974 39 HOH HOH . I 5 HOH A 75 975 148 HOH HOH . I 5 HOH A 76 976 119 HOH HOH . I 5 HOH A 77 977 143 HOH HOH . I 5 HOH A 78 978 157 HOH HOH . I 5 HOH A 79 979 113 HOH HOH . I 5 HOH A 80 980 146 HOH HOH . I 5 HOH A 81 981 111 HOH HOH . J 5 HOH B 1 901 90 HOH HOH . J 5 HOH B 2 902 133 HOH HOH . J 5 HOH B 3 903 161 HOH HOH . J 5 HOH B 4 904 3 HOH HOH . J 5 HOH B 5 905 91 HOH HOH . J 5 HOH B 6 906 28 HOH HOH . J 5 HOH B 7 907 88 HOH HOH . J 5 HOH B 8 908 38 HOH HOH . J 5 HOH B 9 909 11 HOH HOH . J 5 HOH B 10 910 17 HOH HOH . J 5 HOH B 11 911 132 HOH HOH . J 5 HOH B 12 912 77 HOH HOH . J 5 HOH B 13 913 123 HOH HOH . J 5 HOH B 14 914 147 HOH HOH . J 5 HOH B 15 915 165 HOH HOH . J 5 HOH B 16 916 89 HOH HOH . J 5 HOH B 17 917 130 HOH HOH . J 5 HOH B 18 918 134 HOH HOH . J 5 HOH B 19 919 35 HOH HOH . J 5 HOH B 20 920 127 HOH HOH . J 5 HOH B 21 921 106 HOH HOH . J 5 HOH B 22 922 110 HOH HOH . J 5 HOH B 23 923 122 HOH HOH . J 5 HOH B 24 924 23 HOH HOH . J 5 HOH B 25 925 76 HOH HOH . J 5 HOH B 26 926 14 HOH HOH . J 5 HOH B 27 927 101 HOH HOH . J 5 HOH B 28 928 2 HOH HOH . J 5 HOH B 29 929 24 HOH HOH . J 5 HOH B 30 930 154 HOH HOH . J 5 HOH B 31 931 99 HOH HOH . J 5 HOH B 32 932 151 HOH HOH . J 5 HOH B 33 933 69 HOH HOH . J 5 HOH B 34 934 4 HOH HOH . J 5 HOH B 35 935 31 HOH HOH . J 5 HOH B 36 936 98 HOH HOH . J 5 HOH B 37 937 137 HOH HOH . J 5 HOH B 38 938 159 HOH HOH . J 5 HOH B 39 939 86 HOH HOH . J 5 HOH B 40 940 167 HOH HOH . J 5 HOH B 41 941 120 HOH HOH . J 5 HOH B 42 942 67 HOH HOH . J 5 HOH B 43 943 45 HOH HOH . J 5 HOH B 44 944 62 HOH HOH . J 5 HOH B 45 945 136 HOH HOH . J 5 HOH B 46 946 144 HOH HOH . J 5 HOH B 47 947 22 HOH HOH . J 5 HOH B 48 948 150 HOH HOH . J 5 HOH B 49 949 139 HOH HOH . J 5 HOH B 50 950 102 HOH HOH . J 5 HOH B 51 951 30 HOH HOH . J 5 HOH B 52 952 142 HOH HOH . J 5 HOH B 53 953 124 HOH HOH . J 5 HOH B 54 954 43 HOH HOH . J 5 HOH B 55 955 81 HOH HOH . J 5 HOH B 56 956 87 HOH HOH . J 5 HOH B 57 957 19 HOH HOH . J 5 HOH B 58 958 160 HOH HOH . J 5 HOH B 59 959 121 HOH HOH . J 5 HOH B 60 960 52 HOH HOH . J 5 HOH B 61 961 114 HOH HOH . J 5 HOH B 62 962 140 HOH HOH . J 5 HOH B 63 963 55 HOH HOH . J 5 HOH B 64 964 158 HOH HOH . J 5 HOH B 65 965 164 HOH HOH . J 5 HOH B 66 966 34 HOH HOH . J 5 HOH B 67 967 64 HOH HOH . J 5 HOH B 68 968 66 HOH HOH . J 5 HOH B 69 969 15 HOH HOH . J 5 HOH B 70 970 20 HOH HOH . J 5 HOH B 71 971 59 HOH HOH . J 5 HOH B 72 972 116 HOH HOH . J 5 HOH B 73 973 74 HOH HOH . J 5 HOH B 74 974 27 HOH HOH . J 5 HOH B 75 975 103 HOH HOH . J 5 HOH B 76 976 63 HOH HOH . J 5 HOH B 77 977 112 HOH HOH . J 5 HOH B 78 978 138 HOH HOH . J 5 HOH B 79 979 104 HOH HOH . J 5 HOH B 80 980 72 HOH HOH . J 5 HOH B 81 981 163 HOH HOH . J 5 HOH B 82 982 155 HOH HOH . J 5 HOH B 83 983 131 HOH HOH . J 5 HOH B 84 984 37 HOH HOH . J 5 HOH B 85 985 108 HOH HOH . J 5 HOH B 86 986 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -14.077 _atom_site.Cartn_y 3.664 _atom_site.Cartn_z 15.907 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.14 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #