data_5DH9 # _model_server_result.job_id 7SXuFoxT0b8buu3xga3uMQ _model_server_result.datetime_utc '2024-11-29 18:13:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1102}' # _entry.id 5DH9 # _exptl.entry_id 5DH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5DH9 _cell.length_a 106.118 _cell.length_b 106.118 _cell.length_c 304.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 45 A THR 24 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 A OG1 THR 63 A THR 42 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 E O2G GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc4 E O1B GNP . A GNP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc5 F MG MG . A MG 302 1_555 J O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 F MG MG . A MG 302 1_555 J O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 5DH9 _atom_sites.fract_transf_matrix[1][1] 0.009423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GNP A 1 301 301 GNP GNP . F 6 MG A 1 302 302 MG MG . G 7 GOL A 1 303 1 GOL GOL . H 7 GOL C 1 1101 2 GOL GOL . I 7 GOL C 1 1102 3 GOL GOL . J 8 HOH A 1 401 61 HOH HOH . J 8 HOH A 2 402 1 HOH HOH . J 8 HOH A 3 403 15 HOH HOH . J 8 HOH A 4 404 76 HOH HOH . J 8 HOH A 5 405 2 HOH HOH . J 8 HOH A 6 406 29 HOH HOH . J 8 HOH A 7 407 81 HOH HOH . J 8 HOH A 8 408 133 HOH HOH . J 8 HOH A 9 409 58 HOH HOH . J 8 HOH A 10 410 34 HOH HOH . J 8 HOH A 11 411 4 HOH HOH . J 8 HOH A 12 412 13 HOH HOH . J 8 HOH A 13 413 96 HOH HOH . J 8 HOH A 14 414 189 HOH HOH . J 8 HOH A 15 415 30 HOH HOH . J 8 HOH A 16 416 155 HOH HOH . J 8 HOH A 17 417 21 HOH HOH . J 8 HOH A 18 418 201 HOH HOH . J 8 HOH A 19 419 88 HOH HOH . J 8 HOH A 20 420 84 HOH HOH . J 8 HOH A 21 421 16 HOH HOH . J 8 HOH A 22 422 136 HOH HOH . J 8 HOH A 23 423 17 HOH HOH . J 8 HOH A 24 424 33 HOH HOH . J 8 HOH A 25 425 31 HOH HOH . J 8 HOH A 26 426 237 HOH HOH . J 8 HOH A 27 427 223 HOH HOH . J 8 HOH A 28 428 43 HOH HOH . J 8 HOH A 29 429 32 HOH HOH . J 8 HOH A 30 430 22 HOH HOH . J 8 HOH A 31 431 127 HOH HOH . J 8 HOH A 32 432 182 HOH HOH . J 8 HOH A 33 433 168 HOH HOH . J 8 HOH A 34 434 161 HOH HOH . J 8 HOH A 35 435 212 HOH HOH . J 8 HOH A 36 436 165 HOH HOH . J 8 HOH A 37 437 247 HOH HOH . J 8 HOH A 38 438 188 HOH HOH . J 8 HOH A 39 439 240 HOH HOH . J 8 HOH A 40 440 137 HOH HOH . J 8 HOH A 41 441 200 HOH HOH . J 8 HOH A 42 442 206 HOH HOH . J 8 HOH A 43 443 164 HOH HOH . J 8 HOH A 44 444 180 HOH HOH . J 8 HOH A 45 445 230 HOH HOH . J 8 HOH A 46 446 167 HOH HOH . J 8 HOH A 47 447 195 HOH HOH . J 8 HOH A 48 448 172 HOH HOH . J 8 HOH A 49 449 146 HOH HOH . J 8 HOH A 50 450 166 HOH HOH . K 8 HOH B 1 301 5 HOH HOH . K 8 HOH B 2 302 143 HOH HOH . K 8 HOH B 3 303 77 HOH HOH . K 8 HOH B 4 304 209 HOH HOH . K 8 HOH B 5 305 138 HOH HOH . L 8 HOH C 1 1201 251 HOH HOH . L 8 HOH C 2 1202 55 HOH HOH . L 8 HOH C 3 1203 142 HOH HOH . L 8 HOH C 4 1204 59 HOH HOH . L 8 HOH C 5 1205 207 HOH HOH . L 8 HOH C 6 1206 14 HOH HOH . L 8 HOH C 7 1207 19 HOH HOH . L 8 HOH C 8 1208 70 HOH HOH . L 8 HOH C 9 1209 86 HOH HOH . L 8 HOH C 10 1210 12 HOH HOH . L 8 HOH C 11 1211 177 HOH HOH . L 8 HOH C 12 1212 231 HOH HOH . L 8 HOH C 13 1213 20 HOH HOH . L 8 HOH C 14 1214 253 HOH HOH . L 8 HOH C 15 1215 79 HOH HOH . L 8 HOH C 16 1216 74 HOH HOH . L 8 HOH C 17 1217 183 HOH HOH . L 8 HOH C 18 1218 85 HOH HOH . L 8 HOH C 19 1219 89 HOH HOH . L 8 HOH C 20 1220 10 HOH HOH . L 8 HOH C 21 1221 3 HOH HOH . L 8 HOH C 22 1222 147 HOH HOH . L 8 HOH C 23 1223 124 HOH HOH . L 8 HOH C 24 1224 48 HOH HOH . L 8 HOH C 25 1225 90 HOH HOH . L 8 HOH C 26 1226 37 HOH HOH . L 8 HOH C 27 1227 205 HOH HOH . L 8 HOH C 28 1228 99 HOH HOH . L 8 HOH C 29 1229 45 HOH HOH . L 8 HOH C 30 1230 101 HOH HOH . L 8 HOH C 31 1231 184 HOH HOH . L 8 HOH C 32 1232 120 HOH HOH . L 8 HOH C 33 1233 8 HOH HOH . L 8 HOH C 34 1234 107 HOH HOH . L 8 HOH C 35 1235 78 HOH HOH . L 8 HOH C 36 1236 246 HOH HOH . L 8 HOH C 37 1237 145 HOH HOH . L 8 HOH C 38 1238 244 HOH HOH . L 8 HOH C 39 1239 118 HOH HOH . L 8 HOH C 40 1240 139 HOH HOH . L 8 HOH C 41 1241 92 HOH HOH . L 8 HOH C 42 1242 162 HOH HOH . L 8 HOH C 43 1243 191 HOH HOH . L 8 HOH C 44 1244 40 HOH HOH . L 8 HOH C 45 1245 220 HOH HOH . L 8 HOH C 46 1246 159 HOH HOH . L 8 HOH C 47 1247 102 HOH HOH . L 8 HOH C 48 1248 100 HOH HOH . L 8 HOH C 49 1249 171 HOH HOH . L 8 HOH C 50 1250 241 HOH HOH . L 8 HOH C 51 1251 54 HOH HOH . L 8 HOH C 52 1252 193 HOH HOH . L 8 HOH C 53 1253 44 HOH HOH . L 8 HOH C 54 1254 153 HOH HOH . L 8 HOH C 55 1255 68 HOH HOH . L 8 HOH C 56 1256 52 HOH HOH . L 8 HOH C 57 1257 42 HOH HOH . L 8 HOH C 58 1258 174 HOH HOH . L 8 HOH C 59 1259 67 HOH HOH . L 8 HOH C 60 1260 51 HOH HOH . L 8 HOH C 61 1261 69 HOH HOH . L 8 HOH C 62 1262 7 HOH HOH . L 8 HOH C 63 1263 64 HOH HOH . L 8 HOH C 64 1264 158 HOH HOH . L 8 HOH C 65 1265 135 HOH HOH . L 8 HOH C 66 1266 218 HOH HOH . L 8 HOH C 67 1267 95 HOH HOH . L 8 HOH C 68 1268 82 HOH HOH . L 8 HOH C 69 1269 83 HOH HOH . L 8 HOH C 70 1270 105 HOH HOH . L 8 HOH C 71 1271 134 HOH HOH . L 8 HOH C 72 1272 38 HOH HOH . L 8 HOH C 73 1273 73 HOH HOH . L 8 HOH C 74 1274 252 HOH HOH . L 8 HOH C 75 1275 202 HOH HOH . L 8 HOH C 76 1276 56 HOH HOH . L 8 HOH C 77 1277 9 HOH HOH . L 8 HOH C 78 1278 157 HOH HOH . L 8 HOH C 79 1279 72 HOH HOH . L 8 HOH C 80 1280 110 HOH HOH . L 8 HOH C 81 1281 113 HOH HOH . L 8 HOH C 82 1282 18 HOH HOH . L 8 HOH C 83 1283 49 HOH HOH . L 8 HOH C 84 1284 62 HOH HOH . L 8 HOH C 85 1285 215 HOH HOH . L 8 HOH C 86 1286 63 HOH HOH . L 8 HOH C 87 1287 175 HOH HOH . L 8 HOH C 88 1288 93 HOH HOH . L 8 HOH C 89 1289 149 HOH HOH . L 8 HOH C 90 1290 36 HOH HOH . L 8 HOH C 91 1291 214 HOH HOH . L 8 HOH C 92 1292 25 HOH HOH . L 8 HOH C 93 1293 213 HOH HOH . L 8 HOH C 94 1294 243 HOH HOH . L 8 HOH C 95 1295 130 HOH HOH . L 8 HOH C 96 1296 160 HOH HOH . L 8 HOH C 97 1297 197 HOH HOH . L 8 HOH C 98 1298 129 HOH HOH . L 8 HOH C 99 1299 24 HOH HOH . L 8 HOH C 100 1300 53 HOH HOH . L 8 HOH C 101 1301 66 HOH HOH . L 8 HOH C 102 1302 46 HOH HOH . L 8 HOH C 103 1303 181 HOH HOH . L 8 HOH C 104 1304 242 HOH HOH . L 8 HOH C 105 1305 106 HOH HOH . L 8 HOH C 106 1306 47 HOH HOH . L 8 HOH C 107 1307 97 HOH HOH . L 8 HOH C 108 1308 6 HOH HOH . L 8 HOH C 109 1309 226 HOH HOH . L 8 HOH C 110 1310 190 HOH HOH . L 8 HOH C 111 1311 87 HOH HOH . L 8 HOH C 112 1312 65 HOH HOH . L 8 HOH C 113 1313 41 HOH HOH . L 8 HOH C 114 1314 75 HOH HOH . L 8 HOH C 115 1315 170 HOH HOH . L 8 HOH C 116 1316 94 HOH HOH . L 8 HOH C 117 1317 185 HOH HOH . L 8 HOH C 118 1318 228 HOH HOH . L 8 HOH C 119 1319 119 HOH HOH . L 8 HOH C 120 1320 248 HOH HOH . L 8 HOH C 121 1321 204 HOH HOH . L 8 HOH C 122 1322 187 HOH HOH . L 8 HOH C 123 1323 250 HOH HOH . L 8 HOH C 124 1324 115 HOH HOH . L 8 HOH C 125 1325 28 HOH HOH . L 8 HOH C 126 1326 219 HOH HOH . L 8 HOH C 127 1327 104 HOH HOH . L 8 HOH C 128 1328 217 HOH HOH . L 8 HOH C 129 1329 238 HOH HOH . L 8 HOH C 130 1330 236 HOH HOH . L 8 HOH C 131 1331 91 HOH HOH . L 8 HOH C 132 1332 112 HOH HOH . L 8 HOH C 133 1333 224 HOH HOH . L 8 HOH C 134 1334 163 HOH HOH . L 8 HOH C 135 1335 151 HOH HOH . L 8 HOH C 136 1336 125 HOH HOH . L 8 HOH C 137 1337 210 HOH HOH . L 8 HOH C 138 1338 131 HOH HOH . L 8 HOH C 139 1339 122 HOH HOH . L 8 HOH C 140 1340 27 HOH HOH . L 8 HOH C 141 1341 26 HOH HOH . L 8 HOH C 142 1342 216 HOH HOH . L 8 HOH C 143 1343 57 HOH HOH . L 8 HOH C 144 1344 109 HOH HOH . L 8 HOH C 145 1345 232 HOH HOH . L 8 HOH C 146 1346 196 HOH HOH . L 8 HOH C 147 1347 141 HOH HOH . L 8 HOH C 148 1348 234 HOH HOH . L 8 HOH C 149 1349 103 HOH HOH . L 8 HOH C 150 1350 71 HOH HOH . L 8 HOH C 151 1351 80 HOH HOH . L 8 HOH C 152 1352 98 HOH HOH . L 8 HOH C 153 1353 148 HOH HOH . L 8 HOH C 154 1354 35 HOH HOH . L 8 HOH C 155 1355 128 HOH HOH . L 8 HOH C 156 1356 225 HOH HOH . L 8 HOH C 157 1357 173 HOH HOH . L 8 HOH C 158 1358 221 HOH HOH . L 8 HOH C 159 1359 176 HOH HOH . L 8 HOH C 160 1360 179 HOH HOH . L 8 HOH C 161 1361 39 HOH HOH . L 8 HOH C 162 1362 123 HOH HOH . L 8 HOH C 163 1363 11 HOH HOH . L 8 HOH C 164 1364 140 HOH HOH . L 8 HOH C 165 1365 227 HOH HOH . L 8 HOH C 166 1366 156 HOH HOH . L 8 HOH C 167 1367 229 HOH HOH . L 8 HOH C 168 1368 192 HOH HOH . L 8 HOH C 169 1369 199 HOH HOH . L 8 HOH C 170 1370 60 HOH HOH . L 8 HOH C 171 1371 169 HOH HOH . L 8 HOH C 172 1372 239 HOH HOH . L 8 HOH C 173 1373 23 HOH HOH . L 8 HOH C 174 1374 235 HOH HOH . L 8 HOH C 175 1375 222 HOH HOH . L 8 HOH C 176 1376 194 HOH HOH . L 8 HOH C 177 1377 186 HOH HOH . L 8 HOH C 178 1378 198 HOH HOH . L 8 HOH C 179 1379 233 HOH HOH . L 8 HOH C 180 1380 245 HOH HOH . L 8 HOH C 181 1381 144 HOH HOH . L 8 HOH C 182 1382 211 HOH HOH . L 8 HOH C 183 1383 154 HOH HOH . L 8 HOH C 184 1384 152 HOH HOH . L 8 HOH C 185 1385 108 HOH HOH . L 8 HOH C 186 1386 116 HOH HOH . L 8 HOH C 187 1387 178 HOH HOH . L 8 HOH C 188 1388 132 HOH HOH . L 8 HOH C 189 1389 150 HOH HOH . L 8 HOH C 190 1390 249 HOH HOH . L 8 HOH C 191 1391 50 HOH HOH . L 8 HOH C 192 1392 203 HOH HOH . L 8 HOH C 193 1393 126 HOH HOH . L 8 HOH C 194 1394 208 HOH HOH . L 8 HOH C 195 1395 117 HOH HOH . L 8 HOH C 196 1396 121 HOH HOH . L 8 HOH C 197 1397 111 HOH HOH . L 8 HOH C 198 1398 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 7 23.989 16.068 47.999 1 73.48 ? C1 GOL 1102 C 1 HETATM 2 O O1 GOL . . . I 7 23.949 15.295 46.818 1 72.17 ? O1 GOL 1102 C 1 HETATM 3 C C2 GOL . . . I 7 22.708 16.888 48.13 1 73.53 ? C2 GOL 1102 C 1 HETATM 4 O O2 GOL . . . I 7 22.869 18.153 47.523 1 74.39 ? O2 GOL 1102 C 1 HETATM 5 C C3 GOL . . . I 7 22.342 17.055 49.601 1 71.98 ? C3 GOL 1102 C 1 HETATM 6 O O3 GOL . . . I 7 21.39 18.085 49.747 1 71.93 ? O3 GOL 1102 C 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 34 _model_server_stats.element_count 6 #