data_5DHD # _model_server_result.job_id uH9bCK43DNaTDDQEiIhb7Q _model_server_result.datetime_utc '2024-11-14 05:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5DHD # _exptl.entry_id 5DHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DHD _cell.length_a 60.245 _cell.length_b 60.245 _cell.length_c 68.845 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 337 n n S O2 SO4 doub 338 n n S O3 SO4 sing 339 n n S O4 SO4 sing 340 n n # _atom_sites.entry_id 5DHD _atom_sites.fract_transf_matrix[1][1] 0.016599 _atom_sites.fract_transf_matrix[1][2] 0.009583 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 801 1 SO4 SO4 . C 2 SO4 A 1 802 2 SO4 SO4 . D 3 PE3 A 1 803 11 PE3 PE3 . E 3 PE3 A 1 804 12 PE3 PE3 . F 3 PE3 A 1 805 13 PE3 PE3 . G 3 PE3 A 1 806 14 PE3 PE3 . H 3 PE3 A 1 807 15 PE3 PE3 . I 3 PE3 A 1 808 16 PE3 PE3 . J 4 HOH A 1 901 34 HOH HOH . J 4 HOH A 2 902 6 HOH HOH . J 4 HOH A 3 903 2 HOH HOH . J 4 HOH A 4 904 39 HOH HOH . J 4 HOH A 5 905 20 HOH HOH . J 4 HOH A 6 906 5 HOH HOH . J 4 HOH A 7 907 1 HOH HOH . J 4 HOH A 8 908 17 HOH HOH . J 4 HOH A 9 909 9 HOH HOH . J 4 HOH A 10 910 8 HOH HOH . J 4 HOH A 11 911 22 HOH HOH . J 4 HOH A 12 912 31 HOH HOH . J 4 HOH A 13 913 47 HOH HOH . J 4 HOH A 14 914 23 HOH HOH . J 4 HOH A 15 915 11 HOH HOH . J 4 HOH A 16 916 30 HOH HOH . J 4 HOH A 17 917 35 HOH HOH . J 4 HOH A 18 918 54 HOH HOH . J 4 HOH A 19 919 43 HOH HOH . J 4 HOH A 20 920 13 HOH HOH . J 4 HOH A 21 921 56 HOH HOH . J 4 HOH A 22 922 36 HOH HOH . J 4 HOH A 23 923 3 HOH HOH . J 4 HOH A 24 924 25 HOH HOH . J 4 HOH A 25 925 46 HOH HOH . J 4 HOH A 26 926 18 HOH HOH . J 4 HOH A 27 927 44 HOH HOH . J 4 HOH A 28 928 24 HOH HOH . J 4 HOH A 29 929 26 HOH HOH . J 4 HOH A 30 930 51 HOH HOH . J 4 HOH A 31 931 27 HOH HOH . J 4 HOH A 32 932 7 HOH HOH . J 4 HOH A 33 933 28 HOH HOH . J 4 HOH A 34 934 12 HOH HOH . J 4 HOH A 35 935 4 HOH HOH . J 4 HOH A 36 936 58 HOH HOH . J 4 HOH A 37 937 55 HOH HOH . J 4 HOH A 38 938 48 HOH HOH . J 4 HOH A 39 939 57 HOH HOH . J 4 HOH A 40 940 32 HOH HOH . J 4 HOH A 41 941 10 HOH HOH . J 4 HOH A 42 942 15 HOH HOH . J 4 HOH A 43 943 45 HOH HOH . J 4 HOH A 44 944 16 HOH HOH . J 4 HOH A 45 945 21 HOH HOH . J 4 HOH A 46 946 37 HOH HOH . J 4 HOH A 47 947 14 HOH HOH . J 4 HOH A 48 948 19 HOH HOH . J 4 HOH A 49 949 53 HOH HOH . J 4 HOH A 50 950 29 HOH HOH . J 4 HOH A 51 951 41 HOH HOH . J 4 HOH A 52 952 33 HOH HOH . J 4 HOH A 53 953 38 HOH HOH . J 4 HOH A 54 954 49 HOH HOH . J 4 HOH A 55 955 52 HOH HOH . J 4 HOH A 56 956 59 HOH HOH . J 4 HOH A 57 957 40 HOH HOH . J 4 HOH A 58 958 60 HOH HOH . J 4 HOH A 59 959 50 HOH HOH . J 4 HOH A 60 960 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 21.754 24.198 -2.684 0.78 24.88 ? S SO4 801 A 1 HETATM 2 O O1 SO4 . . . B 2 22.508 23.881 -3.905 0.78 28.2 ? O1 SO4 801 A 1 HETATM 3 O O2 SO4 . . . B 2 20.455 23.511 -2.711 0.78 22.26 ? O2 SO4 801 A 1 HETATM 4 O O3 SO4 . . . B 2 21.535 25.655 -2.609 0.78 29.54 ? O3 SO4 801 A 1 HETATM 5 O O4 SO4 . . . B 2 22.525 23.764 -1.512 0.78 24.02 ? O4 SO4 801 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 5 #