data_5DHD # _model_server_result.job_id nwfINcSeOR2uMNHhXDySVA _model_server_result.datetime_utc '2024-11-28 19:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":807}' # _entry.id 5DHD # _exptl.entry_id 5DHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 634.751 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5DHD _cell.length_a 60.245 _cell.length_b 60.245 _cell.length_c 68.845 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C28 H58 O15' _chem_comp.formula_weight 634.751 _chem_comp.id PE3 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O43 C42 PE3 sing 184 n n O43 H43 PE3 sing 185 n n C42 C41 PE3 sing 186 n n C42 H421 PE3 sing 187 n n C42 H422 PE3 sing 188 n n C41 O40 PE3 sing 189 n n C41 H411 PE3 sing 190 n n C41 H412 PE3 sing 191 n n O40 C39 PE3 sing 192 n n C39 C38 PE3 sing 193 n n C39 H391 PE3 sing 194 n n C39 H392 PE3 sing 195 n n C38 O37 PE3 sing 196 n n C38 H381 PE3 sing 197 n n C38 H382 PE3 sing 198 n n O37 C36 PE3 sing 199 n n C36 C35 PE3 sing 200 n n C36 H361 PE3 sing 201 n n C36 H362 PE3 sing 202 n n C35 O34 PE3 sing 203 n n C35 H351 PE3 sing 204 n n C35 H352 PE3 sing 205 n n O34 C33 PE3 sing 206 n n C33 C32 PE3 sing 207 n n C33 H331 PE3 sing 208 n n C33 H332 PE3 sing 209 n n C32 O31 PE3 sing 210 n n C32 H321 PE3 sing 211 n n C32 H322 PE3 sing 212 n n O31 C30 PE3 sing 213 n n C30 C29 PE3 sing 214 n n C30 H301 PE3 sing 215 n n C30 H302 PE3 sing 216 n n C29 O28 PE3 sing 217 n n C29 H291 PE3 sing 218 n n C29 H292 PE3 sing 219 n n O28 C27 PE3 sing 220 n n C27 C26 PE3 sing 221 n n C27 H271 PE3 sing 222 n n C27 H272 PE3 sing 223 n n C26 O25 PE3 sing 224 n n C26 H261 PE3 sing 225 n n C26 H262 PE3 sing 226 n n O25 C24 PE3 sing 227 n n C24 C23 PE3 sing 228 n n C24 H241 PE3 sing 229 n n C24 H242 PE3 sing 230 n n C23 O22 PE3 sing 231 n n C23 H231 PE3 sing 232 n n C23 H232 PE3 sing 233 n n O22 C21 PE3 sing 234 n n C21 C20 PE3 sing 235 n n C21 H211 PE3 sing 236 n n C21 H212 PE3 sing 237 n n C20 O19 PE3 sing 238 n n C20 H201 PE3 sing 239 n n C20 H202 PE3 sing 240 n n O19 C18 PE3 sing 241 n n C18 C17 PE3 sing 242 n n C18 H181 PE3 sing 243 n n C18 H182 PE3 sing 244 n n C17 O16 PE3 sing 245 n n C17 H171 PE3 sing 246 n n C17 H172 PE3 sing 247 n n O16 C15 PE3 sing 248 n n C15 C14 PE3 sing 249 n n C15 H151 PE3 sing 250 n n C15 H152 PE3 sing 251 n n C14 O13 PE3 sing 252 n n C14 H141 PE3 sing 253 n n C14 H142 PE3 sing 254 n n O13 C12 PE3 sing 255 n n C12 C11 PE3 sing 256 n n C12 H121 PE3 sing 257 n n C12 H122 PE3 sing 258 n n C11 O10 PE3 sing 259 n n C11 H111 PE3 sing 260 n n C11 H112 PE3 sing 261 n n O10 C9 PE3 sing 262 n n C9 C8 PE3 sing 263 n n C9 H91 PE3 sing 264 n n C9 H92 PE3 sing 265 n n C8 O7 PE3 sing 266 n n C8 H81 PE3 sing 267 n n C8 H82 PE3 sing 268 n n O7 C6 PE3 sing 269 n n C6 C5 PE3 sing 270 n n C6 H61 PE3 sing 271 n n C6 H62 PE3 sing 272 n n C5 O4 PE3 sing 273 n n C5 H51 PE3 sing 274 n n C5 H52 PE3 sing 275 n n O4 C3 PE3 sing 276 n n C3 C2 PE3 sing 277 n n C3 H31 PE3 sing 278 n n C3 H32 PE3 sing 279 n n C2 O1 PE3 sing 280 n n C2 H21 PE3 sing 281 n n C2 H22 PE3 sing 282 n n O1 HO1 PE3 sing 283 n n # _atom_sites.entry_id 5DHD _atom_sites.fract_transf_matrix[1][1] 0.016599 _atom_sites.fract_transf_matrix[1][2] 0.009583 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 801 1 SO4 SO4 . C 2 SO4 A 1 802 2 SO4 SO4 . D 3 PE3 A 1 803 11 PE3 PE3 . E 3 PE3 A 1 804 12 PE3 PE3 . F 3 PE3 A 1 805 13 PE3 PE3 . G 3 PE3 A 1 806 14 PE3 PE3 . H 3 PE3 A 1 807 15 PE3 PE3 . I 3 PE3 A 1 808 16 PE3 PE3 . J 4 HOH A 1 901 34 HOH HOH . J 4 HOH A 2 902 6 HOH HOH . J 4 HOH A 3 903 2 HOH HOH . J 4 HOH A 4 904 39 HOH HOH . J 4 HOH A 5 905 20 HOH HOH . J 4 HOH A 6 906 5 HOH HOH . J 4 HOH A 7 907 1 HOH HOH . J 4 HOH A 8 908 17 HOH HOH . J 4 HOH A 9 909 9 HOH HOH . J 4 HOH A 10 910 8 HOH HOH . J 4 HOH A 11 911 22 HOH HOH . J 4 HOH A 12 912 31 HOH HOH . J 4 HOH A 13 913 47 HOH HOH . J 4 HOH A 14 914 23 HOH HOH . J 4 HOH A 15 915 11 HOH HOH . J 4 HOH A 16 916 30 HOH HOH . J 4 HOH A 17 917 35 HOH HOH . J 4 HOH A 18 918 54 HOH HOH . J 4 HOH A 19 919 43 HOH HOH . J 4 HOH A 20 920 13 HOH HOH . J 4 HOH A 21 921 56 HOH HOH . J 4 HOH A 22 922 36 HOH HOH . J 4 HOH A 23 923 3 HOH HOH . J 4 HOH A 24 924 25 HOH HOH . J 4 HOH A 25 925 46 HOH HOH . J 4 HOH A 26 926 18 HOH HOH . J 4 HOH A 27 927 44 HOH HOH . J 4 HOH A 28 928 24 HOH HOH . J 4 HOH A 29 929 26 HOH HOH . J 4 HOH A 30 930 51 HOH HOH . J 4 HOH A 31 931 27 HOH HOH . J 4 HOH A 32 932 7 HOH HOH . J 4 HOH A 33 933 28 HOH HOH . J 4 HOH A 34 934 12 HOH HOH . J 4 HOH A 35 935 4 HOH HOH . J 4 HOH A 36 936 58 HOH HOH . J 4 HOH A 37 937 55 HOH HOH . J 4 HOH A 38 938 48 HOH HOH . J 4 HOH A 39 939 57 HOH HOH . J 4 HOH A 40 940 32 HOH HOH . J 4 HOH A 41 941 10 HOH HOH . J 4 HOH A 42 942 15 HOH HOH . J 4 HOH A 43 943 45 HOH HOH . J 4 HOH A 44 944 16 HOH HOH . J 4 HOH A 45 945 21 HOH HOH . J 4 HOH A 46 946 37 HOH HOH . J 4 HOH A 47 947 14 HOH HOH . J 4 HOH A 48 948 19 HOH HOH . J 4 HOH A 49 949 53 HOH HOH . J 4 HOH A 50 950 29 HOH HOH . J 4 HOH A 51 951 41 HOH HOH . J 4 HOH A 52 952 33 HOH HOH . J 4 HOH A 53 953 38 HOH HOH . J 4 HOH A 54 954 49 HOH HOH . J 4 HOH A 55 955 52 HOH HOH . J 4 HOH A 56 956 59 HOH HOH . J 4 HOH A 57 957 40 HOH HOH . J 4 HOH A 58 958 60 HOH HOH . J 4 HOH A 59 959 50 HOH HOH . J 4 HOH A 60 960 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 PE3 . . . H 3 10.549 32.772 14.369 1 59.47 ? O13 PE3 807 A 1 HETATM 2 C C12 PE3 . . . H 3 12.005 32.957 14.369 1 70 ? C12 PE3 807 A 1 HETATM 3 C C11 PE3 . . . H 3 12.584 32.829 12.993 1 70 ? C11 PE3 807 A 1 HETATM 4 O O10 PE3 . . . H 3 12.498 34.08 12.249 1 70 ? O10 PE3 807 A 1 HETATM 5 C C9 PE3 . . . H 3 12.962 33.872 10.872 1 60.73 ? C9 PE3 807 A 1 HETATM 6 C C8 PE3 . . . H 3 12.832 35.152 9.987 1 47.28 ? C8 PE3 807 A 1 HETATM 7 O O7 PE3 . . . H 3 11.424 35.659 10.004 1 47.96 ? O7 PE3 807 A 1 HETATM 8 C C6 PE3 . . . H 3 11.334 36.858 9.166 1 41.01 ? C6 PE3 807 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #