data_5DHE
#
_model_server_result.job_id            7VBotq0o0c-5xh5jTAVoXw 
_model_server_result.datetime_utc      '2024-11-28 18:08:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5dhe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    5DHE 
#
_exptl.entry_id    5DHE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.88 
_cell.angle_gamma         90 
_cell.entry_id            5DHE 
_cell.length_a            49.161 
_cell.length_b            44.669 
_cell.length_c            51.712 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5DHE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 90 n n 
C1 C2 GOL sing 91 n n 
C1 H11 GOL sing 92 n n 
C1 H12 GOL sing 93 n n 
O1 HO1 GOL sing 94 n n 
C2 O2 GOL sing 95 n n 
C2 C3 GOL sing 96 n n 
C2 H2 GOL sing 97 n n 
O2 HO2 GOL sing 98 n n 
C3 O3 GOL sing 99 n n 
C3 H31 GOL sing 100 n n 
C3 H32 GOL sing 101 n n 
O3 HO3 GOL sing 102 n n 
#
_atom_sites.entry_id                     5DHE 
_atom_sites.fract_transf_matrix[1][1]    0.020341 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009434 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022387 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 901 201 GOL GOL . 
D 2 GOL A 1 902 203 GOL GOL . 
E 2 GOL A 1 903 205 GOL GOL . 
F 2 GOL B 1 901 202 GOL GOL . 
G 2 GOL B 1 902 204 GOL GOL . 
H 3 HOH A 1 1001 62 HOH HOH . 
H 3 HOH A 2 1002 83 HOH HOH . 
H 3 HOH A 3 1003 155 HOH HOH . 
H 3 HOH A 4 1004 104 HOH HOH . 
H 3 HOH A 5 1005 40 HOH HOH . 
H 3 HOH A 6 1006 101 HOH HOH . 
H 3 HOH A 7 1007 187 HOH HOH . 
H 3 HOH A 8 1008 178 HOH HOH . 
H 3 HOH A 9 1009 180 HOH HOH . 
H 3 HOH A 10 1010 51 HOH HOH . 
H 3 HOH A 11 1011 3 HOH HOH . 
H 3 HOH A 12 1012 147 HOH HOH . 
H 3 HOH A 13 1013 6 HOH HOH . 
H 3 HOH A 14 1014 35 HOH HOH . 
H 3 HOH A 15 1015 141 HOH HOH . 
H 3 HOH A 16 1016 47 HOH HOH . 
H 3 HOH A 17 1017 18 HOH HOH . 
H 3 HOH A 18 1018 11 HOH HOH . 
H 3 HOH A 19 1019 16 HOH HOH . 
H 3 HOH A 20 1020 69 HOH HOH . 
H 3 HOH A 21 1021 37 HOH HOH . 
H 3 HOH A 22 1022 33 HOH HOH . 
H 3 HOH A 23 1023 7 HOH HOH . 
H 3 HOH A 24 1024 55 HOH HOH . 
H 3 HOH A 25 1025 1 HOH HOH . 
H 3 HOH A 26 1026 5 HOH HOH . 
H 3 HOH A 27 1027 136 HOH HOH . 
H 3 HOH A 28 1028 92 HOH HOH . 
H 3 HOH A 29 1029 8 HOH HOH . 
H 3 HOH A 30 1030 93 HOH HOH . 
H 3 HOH A 31 1031 57 HOH HOH . 
H 3 HOH A 32 1032 76 HOH HOH . 
H 3 HOH A 33 1033 166 HOH HOH . 
H 3 HOH A 34 1034 157 HOH HOH . 
H 3 HOH A 35 1035 156 HOH HOH . 
H 3 HOH A 36 1036 114 HOH HOH . 
H 3 HOH A 37 1037 26 HOH HOH . 
H 3 HOH A 38 1038 70 HOH HOH . 
H 3 HOH A 39 1039 56 HOH HOH . 
H 3 HOH A 40 1040 151 HOH HOH . 
H 3 HOH A 41 1041 19 HOH HOH . 
H 3 HOH A 42 1042 115 HOH HOH . 
H 3 HOH A 43 1043 54 HOH HOH . 
H 3 HOH A 44 1044 144 HOH HOH . 
H 3 HOH A 45 1045 68 HOH HOH . 
H 3 HOH A 46 1046 23 HOH HOH . 
H 3 HOH A 47 1047 86 HOH HOH . 
H 3 HOH A 48 1048 13 HOH HOH . 
H 3 HOH A 49 1049 38 HOH HOH . 
H 3 HOH A 50 1050 160 HOH HOH . 
H 3 HOH A 51 1051 106 HOH HOH . 
H 3 HOH A 52 1052 66 HOH HOH . 
H 3 HOH A 53 1053 61 HOH HOH . 
H 3 HOH A 54 1054 123 HOH HOH . 
H 3 HOH A 55 1055 102 HOH HOH . 
H 3 HOH A 56 1056 17 HOH HOH . 
H 3 HOH A 57 1057 71 HOH HOH . 
H 3 HOH A 58 1058 100 HOH HOH . 
H 3 HOH A 59 1059 43 HOH HOH . 
H 3 HOH A 60 1060 119 HOH HOH . 
H 3 HOH A 61 1061 89 HOH HOH . 
H 3 HOH A 62 1062 75 HOH HOH . 
H 3 HOH A 63 1063 167 HOH HOH . 
H 3 HOH A 64 1064 170 HOH HOH . 
H 3 HOH A 65 1065 80 HOH HOH . 
H 3 HOH A 66 1066 169 HOH HOH . 
H 3 HOH A 67 1067 58 HOH HOH . 
H 3 HOH A 68 1068 46 HOH HOH . 
H 3 HOH A 69 1069 82 HOH HOH . 
H 3 HOH A 70 1070 81 HOH HOH . 
H 3 HOH A 71 1071 134 HOH HOH . 
H 3 HOH A 72 1072 24 HOH HOH . 
H 3 HOH A 73 1073 121 HOH HOH . 
H 3 HOH A 74 1074 20 HOH HOH . 
H 3 HOH A 75 1075 78 HOH HOH . 
H 3 HOH A 76 1076 111 HOH HOH . 
H 3 HOH A 77 1077 42 HOH HOH . 
H 3 HOH A 78 1078 95 HOH HOH . 
H 3 HOH A 79 1079 153 HOH HOH . 
H 3 HOH A 80 1080 154 HOH HOH . 
H 3 HOH A 81 1081 112 HOH HOH . 
H 3 HOH A 82 1082 190 HOH HOH . 
H 3 HOH A 83 1083 171 HOH HOH . 
H 3 HOH A 84 1084 183 HOH HOH . 
H 3 HOH A 85 1085 164 HOH HOH . 
H 3 HOH A 86 1086 146 HOH HOH . 
H 3 HOH A 87 1087 109 HOH HOH . 
H 3 HOH A 88 1088 184 HOH HOH . 
H 3 HOH A 89 1089 177 HOH HOH . 
H 3 HOH A 90 1090 107 HOH HOH . 
H 3 HOH A 91 1091 116 HOH HOH . 
H 3 HOH A 92 1092 182 HOH HOH . 
H 3 HOH A 93 1093 129 HOH HOH . 
H 3 HOH A 94 1094 135 HOH HOH . 
H 3 HOH A 95 1095 168 HOH HOH . 
H 3 HOH A 96 1096 117 HOH HOH . 
H 3 HOH A 97 1097 186 HOH HOH . 
H 3 HOH A 98 1098 185 HOH HOH . 
H 3 HOH A 99 1099 191 HOH HOH . 
I 3 HOH B 1 1001 99 HOH HOH . 
I 3 HOH B 2 1002 49 HOH HOH . 
I 3 HOH B 3 1003 79 HOH HOH . 
I 3 HOH B 4 1004 149 HOH HOH . 
I 3 HOH B 5 1005 87 HOH HOH . 
I 3 HOH B 6 1006 96 HOH HOH . 
I 3 HOH B 7 1007 4 HOH HOH . 
I 3 HOH B 8 1008 41 HOH HOH . 
I 3 HOH B 9 1009 189 HOH HOH . 
I 3 HOH B 10 1010 91 HOH HOH . 
I 3 HOH B 11 1011 53 HOH HOH . 
I 3 HOH B 12 1012 126 HOH HOH . 
I 3 HOH B 13 1013 179 HOH HOH . 
I 3 HOH B 14 1014 137 HOH HOH . 
I 3 HOH B 15 1015 192 HOH HOH . 
I 3 HOH B 16 1016 77 HOH HOH . 
I 3 HOH B 17 1017 194 HOH HOH . 
I 3 HOH B 18 1018 63 HOH HOH . 
I 3 HOH B 19 1019 2 HOH HOH . 
I 3 HOH B 20 1020 50 HOH HOH . 
I 3 HOH B 21 1021 139 HOH HOH . 
I 3 HOH B 22 1022 28 HOH HOH . 
I 3 HOH B 23 1023 130 HOH HOH . 
I 3 HOH B 24 1024 84 HOH HOH . 
I 3 HOH B 25 1025 74 HOH HOH . 
I 3 HOH B 26 1026 65 HOH HOH . 
I 3 HOH B 27 1027 15 HOH HOH . 
I 3 HOH B 28 1028 131 HOH HOH . 
I 3 HOH B 29 1029 98 HOH HOH . 
I 3 HOH B 30 1030 39 HOH HOH . 
I 3 HOH B 31 1031 31 HOH HOH . 
I 3 HOH B 32 1032 67 HOH HOH . 
I 3 HOH B 33 1033 21 HOH HOH . 
I 3 HOH B 34 1034 12 HOH HOH . 
I 3 HOH B 35 1035 22 HOH HOH . 
I 3 HOH B 36 1036 138 HOH HOH . 
I 3 HOH B 37 1037 72 HOH HOH . 
I 3 HOH B 38 1038 133 HOH HOH . 
I 3 HOH B 39 1039 60 HOH HOH . 
I 3 HOH B 40 1040 44 HOH HOH . 
I 3 HOH B 41 1041 64 HOH HOH . 
I 3 HOH B 42 1042 105 HOH HOH . 
I 3 HOH B 43 1043 14 HOH HOH . 
I 3 HOH B 44 1044 88 HOH HOH . 
I 3 HOH B 45 1045 90 HOH HOH . 
I 3 HOH B 46 1046 9 HOH HOH . 
I 3 HOH B 47 1047 103 HOH HOH . 
I 3 HOH B 48 1048 59 HOH HOH . 
I 3 HOH B 49 1049 36 HOH HOH . 
I 3 HOH B 50 1050 48 HOH HOH . 
I 3 HOH B 51 1051 27 HOH HOH . 
I 3 HOH B 52 1052 34 HOH HOH . 
I 3 HOH B 53 1053 173 HOH HOH . 
I 3 HOH B 54 1054 165 HOH HOH . 
I 3 HOH B 55 1055 122 HOH HOH . 
I 3 HOH B 56 1056 188 HOH HOH . 
I 3 HOH B 57 1057 10 HOH HOH . 
I 3 HOH B 58 1058 113 HOH HOH . 
I 3 HOH B 59 1059 25 HOH HOH . 
I 3 HOH B 60 1060 120 HOH HOH . 
I 3 HOH B 61 1061 32 HOH HOH . 
I 3 HOH B 62 1062 94 HOH HOH . 
I 3 HOH B 63 1063 181 HOH HOH . 
I 3 HOH B 64 1064 45 HOH HOH . 
I 3 HOH B 65 1065 140 HOH HOH . 
I 3 HOH B 66 1066 193 HOH HOH . 
I 3 HOH B 67 1067 30 HOH HOH . 
I 3 HOH B 68 1068 142 HOH HOH . 
I 3 HOH B 69 1069 52 HOH HOH . 
I 3 HOH B 70 1070 97 HOH HOH . 
I 3 HOH B 71 1071 132 HOH HOH . 
I 3 HOH B 72 1072 73 HOH HOH . 
I 3 HOH B 73 1073 85 HOH HOH . 
I 3 HOH B 74 1074 127 HOH HOH . 
I 3 HOH B 75 1075 148 HOH HOH . 
I 3 HOH B 76 1076 29 HOH HOH . 
I 3 HOH B 77 1077 125 HOH HOH . 
I 3 HOH B 78 1078 143 HOH HOH . 
I 3 HOH B 79 1079 145 HOH HOH . 
I 3 HOH B 80 1080 159 HOH HOH . 
I 3 HOH B 81 1081 124 HOH HOH . 
I 3 HOH B 82 1082 163 HOH HOH . 
I 3 HOH B 83 1083 161 HOH HOH . 
I 3 HOH B 84 1084 158 HOH HOH . 
I 3 HOH B 85 1085 118 HOH HOH . 
I 3 HOH B 86 1086 150 HOH HOH . 
I 3 HOH B 87 1087 110 HOH HOH . 
I 3 HOH B 88 1088 162 HOH HOH . 
I 3 HOH B 89 1089 128 HOH HOH . 
I 3 HOH B 90 1090 152 HOH HOH . 
I 3 HOH B 91 1091 108 HOH HOH . 
I 3 HOH B 92 1092 172 HOH HOH . 
I 3 HOH B 93 1093 174 HOH HOH . 
I 3 HOH B 94 1094 176 HOH HOH . 
I 3 HOH B 95 1095 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 41.855 20.77 27.359 1 30.53 ? C1 GOL 901 A 1 
HETATM 2 O O1 GOL . . . C 2 41.865 20.445 28.75 1 32.8 ? O1 GOL 901 A 1 
HETATM 3 C C2 GOL . . . C 2 42.007 19.491 26.527 1 27.69 ? C2 GOL 901 A 1 
HETATM 4 O O2 GOL . . . C 2 40.927 18.584 26.812 1 24.91 ? O2 GOL 901 A 1 
HETATM 5 C C3 GOL . . . C 2 41.999 19.839 25.046 1 22.47 ? C3 GOL 901 A 1 
HETATM 6 O O3 GOL . . . C 2 42.135 18.64 24.281 1 24.49 ? O3 GOL 901 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#