data_5DHG # _model_server_result.job_id SYgoIahgY_fq5W-FXUb62Q _model_server_result.datetime_utc '2024-11-26 04:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1501}' # _entry.id 5DHG # _exptl.entry_id 5DHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.466 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-benzyl-N-{3-[4-(2,6-dichlorophenyl)piperidin-1-yl]propyl}-D-prolinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.25 _cell.angle_gamma 90 _cell.entry_id 5DHG _cell.length_a 42.079 _cell.length_b 171.696 _cell.length_c 66.491 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 A,C,D,E,F 3 2 B,G,H,I,J 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 42.079 0 0 3 'crystal symmetry operation' 1_656 x+1,y,z+1 1 0 0 0 1 0 0 0 1 26.839237 0 64.72096 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 123 1_555 A SG CYS 274 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 197 B CYS 1187 1_555 B SG CYS 274 B CYS 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C26 H33 Cl2 N3 O' _chem_comp.formula_weight 474.466 _chem_comp.id DGV _chem_comp.mon_nstd_flag . _chem_comp.name 1-benzyl-N-{3-[4-(2,6-dichlorophenyl)piperidin-1-yl]propyl}-D-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CG CB DGV sing 83 n n CG CD DGV sing 84 n n CB CA DGV sing 85 n n CD N DGV sing 86 n n CA N DGV sing 87 n n CA C DGV sing 88 n n N CAG DGV sing 89 n n CAG CAF DGV sing 90 n n C NAO DGV sing 91 n n C O DGV doub 92 n n NAO CAP DGV sing 93 n n CAF CAC DGV doub 94 n y CAF CAE DGV sing 95 n y CAP CAQ DGV sing 96 n n CAC CAB DGV sing 97 n y CAE CAD DGV doub 98 n y CAQ CAR DGV sing 99 n n CAB CAA DGV doub 100 n y CAD CAA DGV sing 101 n y CAR NAS DGV sing 102 n n NAS CAV DGV sing 103 n n NAS CAT DGV sing 104 n n CAV CAW DGV sing 105 n n CAT CAU DGV sing 106 n n CAW CAX DGV sing 107 n n CAU CAX DGV sing 108 n n CAX CAZ DGV sing 109 n n CLBC CBD DGV sing 110 n n CAZ CBD DGV doub 111 n y CAZ CBA DGV sing 112 n y CBD CBE DGV sing 113 n y CLAY CBA DGV sing 114 n n CBA CBB DGV doub 115 n y CBE CBF DGV doub 116 n y CBB CBF DGV sing 117 n y CBB H1 DGV sing 118 n n CBF H2 DGV sing 119 n n CBE H3 DGV sing 120 n n CAX H4 DGV sing 121 n n CAU H5 DGV sing 122 n n CAU H6 DGV sing 123 n n CAT H7 DGV sing 124 n n CAT H8 DGV sing 125 n n CAW H9 DGV sing 126 n n CAW H10 DGV sing 127 n n CAV H11 DGV sing 128 n n CAV H12 DGV sing 129 n n CAR H14 DGV sing 130 n n CAR H15 DGV sing 131 n n CAQ H16 DGV sing 132 n n CAQ H17 DGV sing 133 n n CAP H18 DGV sing 134 n n CAP H19 DGV sing 135 n n NAO H20 DGV sing 136 n n CD H21 DGV sing 137 n n CD H22 DGV sing 138 n n CG H23 DGV sing 139 n n CG H24 DGV sing 140 n n CB H25 DGV sing 141 n n CB H26 DGV sing 142 n n CA H27 DGV sing 143 n n CAG H29 DGV sing 144 n n CAG H30 DGV sing 145 n n CAE H31 DGV sing 146 n n CAD H32 DGV sing 147 n n CAA H33 DGV sing 148 n n CAB H34 DGV sing 149 n n CAC H35 DGV sing 150 n n # _atom_sites.entry_id 5DHG _atom_sites.fract_transf_matrix[1][1] 0.023765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005595 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DGV A 1 1201 1 DGV DGV . D 3 OLA A 1 1202 4 OLA OLA . E 3 OLA A 1 1203 5 OLA OLA . F 3 OLA A 1 1204 6 OLA OLA . G 2 DGV B 1 1501 2 DGV DGV . H 4 OLC B 1 1502 1 OLC OLC . I 3 OLA B 1 1503 2 OLA OLA . J 3 OLA B 1 1504 3 OLA OLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLAY DGV . . . G 2 -17.431 44.581 -43.658 1 117.88 ? CLAY DGV 1501 B 1 HETATM 2 C CBA DGV . . . G 2 -15.676 44.359 -43.451 1 111.32 ? CBA DGV 1501 B 1 HETATM 3 C CBB DGV . . . G 2 -14.902 43.901 -44.517 1 100.52 ? CBB DGV 1501 B 1 HETATM 4 C CBF DGV . . . G 2 -13.569 43.727 -44.372 1 103.91 ? CBF DGV 1501 B 1 HETATM 5 C CBE DGV . . . G 2 -12.969 43.992 -43.191 1 115.82 ? CBE DGV 1501 B 1 HETATM 6 C CBD DGV . . . G 2 -13.692 44.455 -42.094 1 129.46 ? CBD DGV 1501 B 1 HETATM 7 CL CLBC DGV . . . G 2 -12.773 44.762 -40.597 1 170.92 ? CLBC DGV 1501 B 1 HETATM 8 C CAZ DGV . . . G 2 -15.086 44.663 -42.199 1 110.03 ? CAZ DGV 1501 B 1 HETATM 9 C CAX DGV . . . G 2 -16.029 45.167 -41.033 1 95.76 ? CAX DGV 1501 B 1 HETATM 10 C CAU DGV . . . G 2 -15.583 46.412 -40.358 1 84.79 ? CAU DGV 1501 B 1 HETATM 11 C CAT DGV . . . G 2 -16.165 46.589 -38.991 1 84.71 ? CAT DGV 1501 B 1 HETATM 12 C CAW DGV . . . G 2 -16.159 44.01 -40.045 1 89.43 ? CAW DGV 1501 B 1 HETATM 13 C CAV DGV . . . G 2 -16.844 44.54 -38.734 1 85.69 ? CAV DGV 1501 B 1 HETATM 14 N NAS DGV . . . G 2 -16.138 45.553 -38.212 1 90.19 ? NAS DGV 1501 B 1 HETATM 15 C CAR DGV . . . G 2 -16.814 45.83 -37.15 1 92.09 ? CAR DGV 1501 B 1 HETATM 16 C CAQ DGV . . . G 2 -15.812 46.298 -36.081 1 79.48 ? CAQ DGV 1501 B 1 HETATM 17 C CAP DGV . . . G 2 -16.277 47.724 -35.701 1 84.2 ? CAP DGV 1501 B 1 HETATM 18 N NAO DGV . . . G 2 -15.745 48.031 -34.34 1 82.29 ? NAO DGV 1501 B 1 HETATM 19 C C DGV . . . G 2 -15.773 49.438 -33.84 1 80.21 ? C DGV 1501 B 1 HETATM 20 O O DGV . . . G 2 -16.245 50.214 -34.586 1 91.11 ? O DGV 1501 B 1 HETATM 21 C CD DGV . . . G 2 -13.52 50.029 -30.913 1 94.25 ? CD DGV 1501 B 1 HETATM 22 C CG DGV . . . G 2 -14.723 49.28 -30.233 1 93.93 ? CG DGV 1501 B 1 HETATM 23 C CB DGV . . . G 2 -15.823 49.22 -31.324 1 101.05 ? CB DGV 1501 B 1 HETATM 24 C CA DGV . . . G 2 -15.289 50.056 -32.462 1 89.49 ? CA DGV 1501 B 1 HETATM 25 N N DGV . . . G 2 -13.845 50.03 -32.316 1 102.11 ? N DGV 1501 B 1 HETATM 26 C CAG DGV . . . G 2 -13.227 48.921 -33.009 1 96.74 ? CAG DGV 1501 B 1 HETATM 27 C CAF DGV . . . G 2 -12.879 49.009 -34.505 1 79.92 ? CAF DGV 1501 B 1 HETATM 28 C CAE DGV . . . G 2 -12.746 50.169 -35.091 1 80.47 ? CAE DGV 1501 B 1 HETATM 29 C CAD DGV . . . G 2 -12.408 50.218 -36.588 1 74.05 ? CAD DGV 1501 B 1 HETATM 30 C CAA DGV . . . G 2 -12.257 49.112 -37.267 1 75.72 ? CAA DGV 1501 B 1 HETATM 31 C CAB DGV . . . G 2 -12.416 47.757 -36.578 1 74.95 ? CAB DGV 1501 B 1 HETATM 32 C CAC DGV . . . G 2 -12.705 47.709 -35.292 1 74.49 ? CAC DGV 1501 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #