data_5DHG # _model_server_result.job_id OCeDNC-vwHxiibxxHCERLQ _model_server_result.datetime_utc '2024-11-26 04:52:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5dhg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1502}' # _entry.id 5DHG # _exptl.entry_id 5DHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.25 _cell.angle_gamma 90 _cell.entry_id 5DHG _cell.length_a 42.079 _cell.length_b 171.696 _cell.length_c 66.491 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5DHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 A,C,D,E,F 3 2 B,G,H,I,J 3 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 42.079 0 0 3 'crystal symmetry operation' 1_656 x+1,y,z+1 1 0 0 0 1 0 0 0 1 26.839237 0 64.72096 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 123 1_555 A SG CYS 274 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 197 B CYS 1187 1_555 B SG CYS 274 B CYS 1264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 356 n n C10 C9 OLC doub 357 n n C10 C11 OLC sing 358 n n C9 C8 OLC sing 359 n n C17 C16 OLC sing 360 z n C11 C12 OLC sing 361 n n C8 C7 OLC sing 362 n n C24 C22 OLC sing 363 n n C24 O25 OLC sing 364 n n C16 C15 OLC sing 365 n n C12 C13 OLC sing 366 n n C7 C6 OLC sing 367 n n C15 C14 OLC sing 368 n n C13 C14 OLC sing 369 n n C6 C5 OLC sing 370 n n C5 C4 OLC sing 371 n n C4 C3 OLC sing 372 n n C3 C2 OLC sing 373 n n C2 C1 OLC sing 374 n n C21 C22 OLC sing 375 n n C21 O20 OLC sing 376 n n C1 O19 OLC doub 377 n n C1 O20 OLC sing 378 n n C22 O23 OLC sing 379 n n C18 H18 OLC sing 380 n n C18 H18A OLC sing 381 n n C18 H18B OLC sing 382 n n C10 H10 OLC sing 383 n n C9 H9 OLC sing 384 n n C17 H17 OLC sing 385 n n C17 H17A OLC sing 386 n n C11 H11 OLC sing 387 n n C11 H11A OLC sing 388 n n C8 H8 OLC sing 389 n n C8 H8A OLC sing 390 n n C24 H24 OLC sing 391 n n C24 H24A OLC sing 392 n n C16 H16 OLC sing 393 n n C16 H16A OLC sing 394 n n C12 H12 OLC sing 395 n n C12 H12A OLC sing 396 n n C7 H7 OLC sing 397 n n C7 H7A OLC sing 398 n n C15 H15 OLC sing 399 n n C15 H15A OLC sing 400 n n C13 H13 OLC sing 401 n n C13 H13A OLC sing 402 n n C6 H6 OLC sing 403 n n C6 H6A OLC sing 404 n n C14 H14 OLC sing 405 n n C14 H14A OLC sing 406 n n C5 H5 OLC sing 407 n n C5 H5A OLC sing 408 n n C4 H4 OLC sing 409 n n C4 H4A OLC sing 410 n n C3 H3 OLC sing 411 n n C3 H3A OLC sing 412 n n C2 H2 OLC sing 413 n n C2 H2A OLC sing 414 n n C21 H21 OLC sing 415 n n C21 H21A OLC sing 416 n n C22 H22 OLC sing 417 n n O25 HO25 OLC sing 418 n n O23 HO23 OLC sing 419 n n # _atom_sites.entry_id 5DHG _atom_sites.fract_transf_matrix[1][1] 0.023765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005595 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DGV A 1 1201 1 DGV DGV . D 3 OLA A 1 1202 4 OLA OLA . E 3 OLA A 1 1203 5 OLA OLA . F 3 OLA A 1 1204 6 OLA OLA . G 2 DGV B 1 1501 2 DGV DGV . H 4 OLC B 1 1502 1 OLC OLC . I 3 OLA B 1 1503 2 OLA OLA . J 3 OLA B 1 1504 3 OLA OLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . H 4 -4.315 21.638 -51.196 1 91.8 ? C24 OLC 1502 B 1 HETATM 2 C C4 OLC . . . H 4 -5.342 27.7 -53.167 1 59.25 ? C4 OLC 1502 B 1 HETATM 3 C C3 OLC . . . H 4 -6.325 26.55 -53.369 1 75.85 ? C3 OLC 1502 B 1 HETATM 4 C C2 OLC . . . H 4 -5.602 25.208 -53.384 1 91.94 ? C2 OLC 1502 B 1 HETATM 5 C C21 OLC . . . H 4 -6.681 21.842 -51.868 1 83.88 ? C21 OLC 1502 B 1 HETATM 6 C C1 OLC . . . H 4 -6.409 24.196 -52.606 1 89.98 ? C1 OLC 1502 B 1 HETATM 7 C C22 OLC . . . H 4 -5.58 20.852 -51.53 1 80.02 ? C22 OLC 1502 B 1 HETATM 8 O O19 OLC . . . H 4 -7.269 24.548 -51.812 1 72.01 ? O19 OLC 1502 B 1 HETATM 9 O O25 OLC . . . H 4 -3.165 20.785 -51.261 1 84.01 ? O25 OLC 1502 B 1 HETATM 10 O O23 OLC . . . H 4 -5.996 20.089 -50.393 1 66.56 ? O23 OLC 1502 B 1 HETATM 11 O O20 OLC . . . H 4 -6.151 22.779 -52.796 1 82.27 ? O20 OLC 1502 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #